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Tian H, Fan Z, Wang Z, Fan Q, Ye Z, Gou F, Wei J. Prediction of vibrational spectrum and thermodynamic properties for phosphorus mononitride. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 304:123381. [PMID: 37734246 DOI: 10.1016/j.saa.2023.123381] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Revised: 08/29/2023] [Accepted: 09/07/2023] [Indexed: 09/23/2023]
Abstract
In this work, an accurate potential energy curve (PEC) for the ground electronic state of phosphorus mononitride (PN) molecule has been determined from a variationally improved Hulburt-Hirschfelder (VIHH) oscillator model in conjunction with the experimental spectral constants (De,ωe,ωexe,Be,αe,re). We have numerically solved the Schrödinger equation for the VIHH potential using the LEVEL program, obtaining the pure vibrational spectrum that converges to the dissociation limit. In addition, the partition functions of PN molecule are calculated using the full rovibrational energies. Ultimately, thermodynamic properties like molar heat capacity, entropy, enthalpy, and Gibbs free energy were calculated for the PN molecule and show good agreement with those data from the NIST (National Institute of Standards and Technology) database.
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Affiliation(s)
- Hongrui Tian
- School of Science, Key Laboratory of High Performance Scientific Computation, Xihua University, Chengdu 610039, China; Key Laboratory of Radiation Physics and Technology of Ministry of Education, Institute of Nuclear Science and Technology, Sichuan University, Chengdu 610064, China
| | - Zhixiang Fan
- School of Science, Key Laboratory of High Performance Scientific Computation, Xihua University, Chengdu 610039, China
| | - Zhengrong Wang
- School of Science, Key Laboratory of High Performance Scientific Computation, Xihua University, Chengdu 610039, China
| | - Qunchao Fan
- School of Science, Key Laboratory of High Performance Scientific Computation, Xihua University, Chengdu 610039, China.
| | - Zongbiao Ye
- Key Laboratory of Radiation Physics and Technology of Ministry of Education, Institute of Nuclear Science and Technology, Sichuan University, Chengdu 610064, China
| | - Fujun Gou
- Key Laboratory of Radiation Physics and Technology of Ministry of Education, Institute of Nuclear Science and Technology, Sichuan University, Chengdu 610064, China.
| | - Jianjun Wei
- Institute of Atomic and Molecular Physics, Sichuan University, Chengdu 610064, China
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2
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Manzhos S, Ihara M. A controlled study of the effect of deviations from symmetry of the potential energy surface (PES) on the accuracy of the vibrational spectrum computed with collocation. J Chem Phys 2023; 159:211103. [PMID: 38038200 DOI: 10.1063/5.0182373] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2023] [Accepted: 11/12/2023] [Indexed: 12/02/2023] Open
Abstract
Symmetry, in particular permutational symmetry, of a potential energy surface (PES) is a useful property in quantum chemical calculations. It facilitates, in particular, state labelling and identification of degenerate states. In many practically important applications, however, these issues are unimportant. The imposition of exact symmetry and the perception that it is necessary create additional methodological requirements narrowing or complicating algorithmic choices that are thereby biased against methods and codes that by default do not incorporate symmetry, including most off-the-shelf machine learning methods that cannot be directly used if exact symmetry is demanded. By introducing symmetric and unsymmetric errors into the PES of H2CO in a controlled way and computing the vibrational spectrum with collocation using symmetric and nonsymmetric collocation point sets, we show that when the deviations from an ideal PES are random, imposition of exact symmetry does not bring any practical advantages. Moreover, a calculation ignoring symmetry may be more accurate. We also compare machine-learned PESs with and without symmetrization and demonstrate that there is no advantage of imposing exact symmetry for the accuracy of the vibrational spectrum.
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Affiliation(s)
- Sergei Manzhos
- School of Materials and Chemical Technology, Tokyo Institute of Technology, Ookayama 2-12-1, Meguro-ku, Tokyo 152-8552, Japan
| | - Manabu Ihara
- School of Materials and Chemical Technology, Tokyo Institute of Technology, Ookayama 2-12-1, Meguro-ku, Tokyo 152-8552, Japan
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3
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Li P, Jiao Y, Huang J, Chen S. Electric Double Layer Effects in Electrocatalysis: Insights from Ab Initio Simulation and Hierarchical Continuum Modeling. JACS AU 2023; 3:2640-2659. [PMID: 37885580 PMCID: PMC10598835 DOI: 10.1021/jacsau.3c00410] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Revised: 09/02/2023] [Accepted: 09/06/2023] [Indexed: 10/28/2023]
Abstract
Structures of the electric double layer (EDL) at electrocatalytic interfaces, which are modulated by the material properties, the electrolyte characteristics (e.g., the pH, the types and concentrations of ions), and the electrode potential, play crucial roles in the reaction kinetics. Understanding the EDL effects in electrocatalysis has attracted substantial research interest in recent years. However, the intrinsic relationships between the specific EDL structures and electrocatalytic kinetics remain poorly understood, especially on the atomic scale. In this Perspective, we briefly review the recent advances in deciphering the EDL effects mainly in hydrogen and oxygen electrocatalysis through a multiscale approach, spanning from the atomistic scale simulated by ab initio methods to the macroscale by a hierarchical approach. We highlight the importance of resolving the local reaction environment, especially the local hydrogen bond network, in understanding EDL effects. Finally, some of the remaining challenges are outlined, and an outlook for future developments in these exciting frontiers is provided.
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Affiliation(s)
- Peng Li
- Hubei
Key Laboratory of Electrochemical Power Sources, College of Chemistry
and Molecular Sciences, Wuhan University, Wuhan 430072, China
| | - Yuzhou Jiao
- Hubei
Key Laboratory of Electrochemical Power Sources, College of Chemistry
and Molecular Sciences, Wuhan University, Wuhan 430072, China
| | - Jun Huang
- Institute
of Energy and Climate Research, IEK-13: Theory and Computation of
Energy Materials, Forschungszentrum Jülich
GmbH, 52425 Jülich, Germany
- Theory
of Electrocatalytic Interfaces, Faculty of Georesources and Materials
Engineering, RWTH Aachen University, 52062 Aachen, Germany
| | - Shengli Chen
- Hubei
Key Laboratory of Electrochemical Power Sources, College of Chemistry
and Molecular Sciences, Wuhan University, Wuhan 430072, China
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4
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Manzhos S, Ihara M, Carrington T. Using Collocation to Solve the Schrödinger Equation. J Chem Theory Comput 2023; 19:1641-1656. [PMID: 36974479 DOI: 10.1021/acs.jctc.2c01232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/10/2023]
Abstract
We review the collocation approach to the solution of the Schrödinger equation and its uses in applications. Interrelations between collocation and other methods are highlighted. We also stress advantages and disadvantages of the rectangular collocation formulation. Using collocation makes it possible to use any, e.g. optimized, coordinates and basis functions, including nonintegrable basis functions, and provides a straightforward way of dealing with singularities in the potential. In addition, we stress that using collocation facilitates tuning the shape of basis functions and the placement of points, both of which can be done with machine-learning methods. Applications to electronic and vibrational problems are reviewed focusing on calculations for molecules on surfaces for which there are few variational calculations. Collocation has advantages when potential energy surfaces are unavailable, in particular, for molecule-surface systems, and for systems for which standard direct product quadrature grids, often used with variational methods, are costly.
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Affiliation(s)
- Sergei Manzhos
- School of Materials and Chemical Technology, Tokyo Institute of Technology, Ookayama 2-12-1, Meguro-ku, Tokyo 152-8552, Japan
| | - Manabu Ihara
- School of Materials and Chemical Technology, Tokyo Institute of Technology, Ookayama 2-12-1, Meguro-ku, Tokyo 152-8552, Japan
| | - Tucker Carrington
- Department of Chemistry, Queen’s University, 90 Bader Lane, Kingston, Ontario K7L 3N6, Canada
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5
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Fayaz A, Banik S, Kanchan Roy T. The importance of electron correlations on vibrational anharmonicities and potential energy surfaces. COMPUT THEOR CHEM 2023. [DOI: 10.1016/j.comptc.2023.114059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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6
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Manzhos S, Tsuda S, Ihara M. Machine learning in computational chemistry: interplay between (non)linearity, basis sets, and dimensionality. Phys Chem Chem Phys 2023; 25:1546-1555. [PMID: 36562317 DOI: 10.1039/d2cp04155c] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Machine learning (ML) based methods and tools have now firmly established themselves in physical chemistry and in particular in theoretical and computational chemistry and in materials chemistry. The generality of popular ML techniques such as neural networks or kernel methods (Gaussian process and kernel ridge regression and their flavors) permitted their application to diverse problems from prediction of properties of functional materials (catalysts, solid state ionic conductors, etc.) from descriptors to the building of interatomic potentials (where ML is currently routinely used in applications) and electron density functionals. These ML techniques are assumed to have superior expressive power of nonlinear methods, and are often used "as is", with concepts such as "non-parametric" or "deep learning" used without a clear justification for their need or advantage over simpler and more robust alternatives. In this Perspective, we highlight some interrelations between popular ML techniques and traditional linear regressions and basis expansions and demonstrate that in certain regimes (such as a very high dimensionality) these approximations might collapse. We also discuss ways to recover the expressive power of a nonlinear approach and to help select hyperparameters with the help of high-dimensional model representation and to obtain elements of insight while preserving the generality of the method.
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Affiliation(s)
- Sergei Manzhos
- School of Materials and Chemical Technology, Tokyo Institute of Technology, Ookayama 2-12-1, Meguro-ku, Tokyo 152-8552, Japan.
| | - Shunsaku Tsuda
- School of Materials and Chemical Technology, Tokyo Institute of Technology, Ookayama 2-12-1, Meguro-ku, Tokyo 152-8552, Japan.
| | - Manabu Ihara
- School of Materials and Chemical Technology, Tokyo Institute of Technology, Ookayama 2-12-1, Meguro-ku, Tokyo 152-8552, Japan.
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Mino L, Cazzaniga M, Moriggi F, Ceotto M. Elucidating NO x Surface Chemistry at the Anatase (101) Surface in TiO 2 Nanoparticles. THE JOURNAL OF PHYSICAL CHEMISTRY. C, NANOMATERIALS AND INTERFACES 2023; 127:437-449. [PMID: 36660096 PMCID: PMC9841571 DOI: 10.1021/acs.jpcc.2c07489] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Revised: 12/12/2022] [Indexed: 06/17/2023]
Abstract
Understanding NO x chemistry at titania nanoparticle surfaces is important for photocatalytic environmental remediation processes. We focus on this problem and put forward an experimental-computational approach based on vibrational spectroscopy grounds. Temperature-dependent IR experiments of NO x adsorption on shape-engineered nanoparticle (101) anatase surfaces are paired with power spectra obtained from Born-Oppenheimer trajectories. Then, the harmonic versus anharmonic vibrational frequencies of several adsorption scenarios are directly compared with the IR experiments. We conclude that molecules are adsorbed mainly by the N-end side and both the intermolecular interactions between adsorbed molecules and (NO)2 dimer formation are responsible for the main NO adsorption spectroscopic features. We also investigate the spectroscopy and the mechanism of formation on defective anatase surfaces of the long-lived greenhouse gas N2O.
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Affiliation(s)
- Lorenzo Mino
- Department
of Chemistry and NIS Centre, University
of Torino, Via Giuria
7, I-10125 Torino, Italy
| | - Marco Cazzaniga
- Dipartimento
di Chimica, Università Degli Studi
di Milano, Via Golgi 19, I-20133 Milano, Italy
| | - Francesco Moriggi
- Dipartimento
di Chimica, Università Degli Studi
di Milano, Via Golgi 19, I-20133 Milano, Italy
| | - Michele Ceotto
- Dipartimento
di Chimica, Università Degli Studi
di Milano, Via Golgi 19, I-20133 Milano, Italy
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8
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Moura RT, Quintano M, Antonio JJ, Freindorf M, Kraka E. Automatic Generation of Local Vibrational Mode Parameters: From Small to Large Molecules and QM/MM Systems. J Phys Chem A 2022; 126:9313-9331. [DOI: 10.1021/acs.jpca.2c07871] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Renaldo T. Moura
- Computational and Theoretical Chemistry Group (CATCO), Department of Chemistry, Southern Methodist University, 3215 Daniel Avenue, Dallas, Texas75275-0314, United States
- Department of Chemistry and Physics Center of Agrarian Sciences, Federal University of Paraiba, Areia, PB58397-000, Brazil
| | - Mateus Quintano
- Computational and Theoretical Chemistry Group (CATCO), Department of Chemistry, Southern Methodist University, 3215 Daniel Avenue, Dallas, Texas75275-0314, United States
| | - Juliana J. Antonio
- Computational and Theoretical Chemistry Group (CATCO), Department of Chemistry, Southern Methodist University, 3215 Daniel Avenue, Dallas, Texas75275-0314, United States
| | - Marek Freindorf
- Computational and Theoretical Chemistry Group (CATCO), Department of Chemistry, Southern Methodist University, 3215 Daniel Avenue, Dallas, Texas75275-0314, United States
| | - Elfi Kraka
- Computational and Theoretical Chemistry Group (CATCO), Department of Chemistry, Southern Methodist University, 3215 Daniel Avenue, Dallas, Texas75275-0314, United States
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9
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Kraka E, Quintano M, La Force HW, Antonio JJ, Freindorf M. The Local Vibrational Mode Theory and Its Place in the Vibrational Spectroscopy Arena. J Phys Chem A 2022; 126:8781-8798. [DOI: 10.1021/acs.jpca.2c05962] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Elfi Kraka
- Computational and Theoretical Chemistry Group (CATCO), Department of Chemistry, Southern Methodist University, 3215 Daniel Ave, Dallas, Texas75275-0314, United States
| | - Mateus Quintano
- Computational and Theoretical Chemistry Group (CATCO), Department of Chemistry, Southern Methodist University, 3215 Daniel Ave, Dallas, Texas75275-0314, United States
| | - Hunter W. La Force
- Computational and Theoretical Chemistry Group (CATCO), Department of Chemistry, Southern Methodist University, 3215 Daniel Ave, Dallas, Texas75275-0314, United States
| | - Juliana J. Antonio
- Computational and Theoretical Chemistry Group (CATCO), Department of Chemistry, Southern Methodist University, 3215 Daniel Ave, Dallas, Texas75275-0314, United States
| | - Marek Freindorf
- Computational and Theoretical Chemistry Group (CATCO), Department of Chemistry, Southern Methodist University, 3215 Daniel Ave, Dallas, Texas75275-0314, United States
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10
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Cazzaniga M, Micciarelli M, Gabas F, Finocchi F, Ceotto M. Quantum Anharmonic Calculations of Vibrational Spectra for Water Adsorbed on Titania Anatase(101) Surface: Dissociative versus Molecular Adsorption. THE JOURNAL OF PHYSICAL CHEMISTRY. C, NANOMATERIALS AND INTERFACES 2022; 126:12060-12073. [PMID: 35928238 PMCID: PMC9340806 DOI: 10.1021/acs.jpcc.2c02137] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/29/2022] [Revised: 06/10/2022] [Indexed: 06/15/2023]
Abstract
The interaction of water molecules and hydroxyl groups with titanium dioxide (TiO2) surfaces is ubiquitous and very important in anatase nanoparticle photocatalytic processes. Infrared spectroscopy, assisted by ab initio calculations of vibrational frequencies, can be a powerful tool to elucidate the mechanisms behind water adsorption. However, a straightforward comparison between measurements and calculations remains a challenging task because of the complexity of the physical phenomena occurring on nanoparticle surfaces. Consequently, severe computational approximations, such as harmonic vibrational ones, are usually employed. In the present work we partially address this complexity issue by overcoming some of the standard approximations used in theoretical simulations and employ the Divide and Conquer Semiclassical Initial Value Representation (DC-SCIVR) molecular dynamics. This method allows to perform simulations of vibrational spectra of large dimensional systems accounting not only for anharmonicities, but also for nuclear quantum effects. We apply this computational method to water and deuterated water adsorbed on the ideal TiO2 anatase(101) surface, contemplating both the molecular and the dissociated adsorption processes. The results highlight not only the presence of an anharmonic shift of the frequencies in agreement with the experiments, but also complex quantum mechanical spectral signatures induced by the coupling of molecular vibrational modes with the surface ones, which are different in the hydrogenated case from the deuterated one. These couplings are further analyzed by exploiting the mode subdivision performed during the divide and conquer procedure.
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Affiliation(s)
- Marco Cazzaniga
- Dipartimento
di Chimica, Universitá degli Studi
di Milano, via Golgi 19, 20133 Milano, Italy
| | - Marco Micciarelli
- Dipartimento
di Chimica, Universitá degli Studi
di Milano, via Golgi 19, 20133 Milano, Italy
| | - Fabio Gabas
- Dipartimento
di Chimica, Universitá degli Studi
di Milano, via Golgi 19, 20133 Milano, Italy
| | - Fabio Finocchi
- Sorbonne
Université, CNRS, Institut des NanoSciences
de Paris (INSP), 4 Place
Jussieu, Paris F- 75005, France
| | - Michele Ceotto
- Dipartimento
di Chimica, Universitá degli Studi
di Milano, via Golgi 19, 20133 Milano, Italy
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