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Sysoeva AA, Safinskaya YV, Il'in MV, Novikov AS, Bolotin DS. Halonium and chalconium salt-catalyzed Schiff condensation: kinetics and DFT insights into organocatalyst activity parameters. Org Biomol Chem 2025; 23:1970-1980. [PMID: 39834308 DOI: 10.1039/d4ob01798f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2025]
Abstract
The Schiff condensation between 4-methylbenzaldehyde and 2-aminopyridine, catalyzed by chloronium, bromonium, and iodonium triflates, as well as sulfonium, selenonium, and telluronium triflates, was investigated. 1H NMR monitoring revealed that the catalytic activity increased significantly with heavier σ-hole-bearing heteroatoms. DFT calculations showed that the maximum electrostatic potential at the σ-hole was a more reliable predictor of the catalytic activity of these organoelement species. In contrast, the equilibrium concentrations of the activated form of the electrophile and the electrophile-to-onium cation charge transfer values did not accurately reflect the catalytic activity of the onium salts.
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Affiliation(s)
- Alexandra A Sysoeva
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg, 199034, Russian Federation.
| | - Yana V Safinskaya
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg, 199034, Russian Federation.
| | - Mikhail V Il'in
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg, 199034, Russian Federation.
| | - Alexander S Novikov
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg, 199034, Russian Federation.
- Peoples' Friendship University of Russia (RUDN University), Miklukho-Maklaya Street, 6, Moscow, 117198, Russian Federation
| | - Dmitrii S Bolotin
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg, 199034, Russian Federation.
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2
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Zhu H, Manchado A, Omar Farah A, McKay AP, Cordes DB, Cheong PHY, Kasten K, Smith AD. Isothiourea-Catalysed Acylative Dynamic Kinetic Resolution of Tetra-substituted Morpholinone and Benzoxazinone Lactols. Angew Chem Int Ed Engl 2024; 63:e202402908. [PMID: 38713293 DOI: 10.1002/anie.202402908] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2024] [Revised: 05/03/2024] [Accepted: 05/06/2024] [Indexed: 05/08/2024]
Abstract
The development of methods to allow the selective acylative dynamic kinetic resolution (DKR) of tetra-substituted lactols is a recognised synthetic challenge. In this manuscript, a highly enantioselective isothiourea-catalysed acylative DKR of tetra-substituted morpholinone and benzoxazinone-derived lactols is reported. The scope and limitations of this methodology have been developed, with high enantioselectivity and good to excellent yields (up to 89 %, 99 : 1 er) observed across a broad range of substrate derivatives incorporating substitution at N(4) and C(2), di- and spirocyclic substitution at C(5) and C(6), as well as benzannulation (>35 examples in total). The DKR process is amenable to scale-up on a 1 g laboratory scale. The factors leading to high selectivity in this DKR process have been probed through computation, with an N-C=O⋅⋅⋅isothiouronium interaction identified as key to producing ester products in highly enantioenriched form.
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Affiliation(s)
- Haoxiang Zhu
- EaStCHEM, School of Chemistry, University of St Andrews, St Andrews, Fife, KY16 9ST, UK
| | - Alejandro Manchado
- EaStCHEM, School of Chemistry, University of St Andrews, St Andrews, Fife, KY16 9ST, UK
- Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad de Salamanca, Plaza de los Caídos 1-5, 37008, Salamanca, Spain
| | - Abdikani Omar Farah
- Department of Chemistry, Oregon State University, 153 Gilbert Hall, Corvallis, OR 97331, USA
| | - Aidan P McKay
- EaStCHEM, School of Chemistry, University of St Andrews, St Andrews, Fife, KY16 9ST, UK
| | - David B Cordes
- EaStCHEM, School of Chemistry, University of St Andrews, St Andrews, Fife, KY16 9ST, UK
| | - Paul Ha-Yeon Cheong
- Department of Chemistry, Oregon State University, 153 Gilbert Hall, Corvallis, OR 97331, USA
| | - Kevin Kasten
- EaStCHEM, School of Chemistry, University of St Andrews, St Andrews, Fife, KY16 9ST, UK
| | - Andrew D Smith
- EaStCHEM, School of Chemistry, University of St Andrews, St Andrews, Fife, KY16 9ST, UK
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3
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Agrawal SK, Majhi PK, Goodfellow AS, Tak RK, Cordes DB, McKay AP, Kasten K, Bühl M, Smith AD. Synthesis of Tetra-Substituted 3-Hydroxyphthalide Esters by Isothiourea-Catalysed Acylative Dynamic Kinetic Resolution. Angew Chem Int Ed Engl 2024; 63:e202402909. [PMID: 38713305 DOI: 10.1002/anie.202402909] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2024] [Revised: 05/03/2024] [Accepted: 05/06/2024] [Indexed: 05/08/2024]
Abstract
A general and highly enantioselective method for the preparation of tetra-substituted 3-hydroxyphthalide esters via isothiourea-catalysed acylative dynamic kinetic resolution (DKR) is reported. Using (2S,3R)-HyperBTM (5 mol %) as the catalyst, the scope and limitations of this methodology have been extensively probed, with high enantioselectivity and good to excellent yields observed (>40 examples, up to 99 %, 99 : 1 er). Substitution of the aromatic core within the 3-hydroxyphthalide skeleton, as well as aliphatic and aromatic substitution at C(3), is readily tolerated. A diverse range of anhydrides, including those from bioactive and pharmaceutically relevant acids, can also be used. The high enantioselectivity observed in this DKR process has been probed computationally, with a key substrate heteroatom donor O⋅⋅⋅acyl-isothiouronium interaction identified through DFT analysis as necessary for enantiodiscrimination.
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Affiliation(s)
- Shubham K Agrawal
- EaStCHEM, School of Chemistry, University of St Andrews, St Andrews, Fife, KY16 9ST, UK
| | - Pankaj K Majhi
- EaStCHEM, School of Chemistry, University of St Andrews, St Andrews, Fife, KY16 9ST, UK
| | - Alister S Goodfellow
- EaStCHEM, School of Chemistry, University of St Andrews, St Andrews, Fife, KY16 9ST, UK
| | - Raj K Tak
- EaStCHEM, School of Chemistry, University of St Andrews, St Andrews, Fife, KY16 9ST, UK
| | - David B Cordes
- EaStCHEM, School of Chemistry, University of St Andrews, St Andrews, Fife, KY16 9ST, UK
| | - Aidan P McKay
- EaStCHEM, School of Chemistry, University of St Andrews, St Andrews, Fife, KY16 9ST, UK
| | - Kevin Kasten
- EaStCHEM, School of Chemistry, University of St Andrews, St Andrews, Fife, KY16 9ST, UK
| | - Michael Bühl
- EaStCHEM, School of Chemistry, University of St Andrews, St Andrews, Fife, KY16 9ST, UK
| | - Andrew D Smith
- EaStCHEM, School of Chemistry, University of St Andrews, St Andrews, Fife, KY16 9ST, UK
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Stoikov II, Antipin IS, Burilov VA, Kurbangalieva AR, Rostovskii NV, Pankova AS, Balova IA, Remizov YO, Pevzner LM, Petrov ML, Vasilyev AV, Averin AD, Beletskaya IP, Nenajdenko VG, Beloglazkina EK, Gromov SP, Karlov SS, Magdesieva TV, Prishchenko AA, Popkov SV, Terent’ev AO, Tsaplin GV, Kustova TP, Kochetova LB, Magdalinova NA, Krasnokutskaya EA, Nyuchev AV, Kuznetsova YL, Fedorov AY, Egorova AY, Grinev VS, Sorokin VV, Ovchinnikov KL, Kofanov ER, Kolobov AV, Rusinov VL, Zyryanov GV, Nosov EV, Bakulev VA, Belskaya NP, Berezkina TV, Obydennov DL, Sosnovskikh VY, Bakhtin SG, Baranova OV, Doroshkevich VS, Raskildina GZ, Sultanova RM, Zlotskii SS, Dyachenko VD, Dyachenko IV, Fisyuk AS, Konshin VV, Dotsenko VV, Ivleva EA, Reznikov AN, Klimochkin YN, Aksenov DA, Aksenov NA, Aksenov AV, Burmistrov VV, Butov GM, Novakov IA, Shikhaliev KS, Stolpovskaya NV, Medvedev SM, Kandalintseva NV, Prosenko OI, Menshchikova EB, Golovanov AA, Khashirova SY. Organic Chemistry in Russian Universities. Achievements of Recent Years. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2024; 60:1361-1584. [DOI: 10.1134/s1070428024080013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2024] [Revised: 03/28/2024] [Accepted: 03/31/2024] [Indexed: 01/06/2025]
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Wang C, Krupp A, Strohmann C, Grabe B, Loh CCJ. Harnessing Multistep Chalcogen Bonding Activation in the α-Stereoselective Synthesis of Iminoglycosides. J Am Chem Soc 2024; 146:10608-10620. [PMID: 38564319 PMCID: PMC11027159 DOI: 10.1021/jacs.4c00262] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2024] [Revised: 03/14/2024] [Accepted: 03/15/2024] [Indexed: 04/04/2024]
Abstract
The use of noncovalent interactions (NCIs) has received significant attention as a pivotal synthetic handle. Recently, the exploitation of unconventional NCIs has gained considerable traction in challenging reaction manifolds such as glycosylation due to their capacity to facilitate entry into difficult-to-access sugars and glycomimetics. While investigations involving oxacyclic pyrano- or furanoside scaffolds are relatively common, methods that allow the selective synthesis of biologically important iminosugars are comparatively rare. Here, we report the capacity of a phosphonochalcogenide (PCH) to catalyze the stereoselective α-iminoglycosylation of iminoglycals with a wide array of glycosyl acceptors with remarkable protecting group tolerance. Mechanistic studies have illuminated the counterintuitive role of the catalyst in serially activating both the glycosyl donor and acceptor in the up/downstream stages of the reaction through chalcogen bonding (ChB). The dynamic interaction of chalcogens with substrates opens up new mechanistic opportunities based on iterative ChB catalyst engagement and disengagement in multiple elementary steps.
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Affiliation(s)
- Caiming Wang
- Abteilung
Chemische Biologie, Max Planck Institut
für Molekulare Physiologie, Otto-Hahn-Straße 11, 44227 Dortmund, Germany
- Fakultät
für Chemie und Chemische Biologie, Technische Universität Dortmund, Otto-Hahn-Straße 4a, 44227 Dortmund, Germany
| | - Anna Krupp
- Anorganische
Chemie, Technische Universität Dortmund, Otto-Hahn-Straße 6, 44227 Dortmund, Germany
| | - Carsten Strohmann
- Anorganische
Chemie, Technische Universität Dortmund, Otto-Hahn-Straße 6, 44227 Dortmund, Germany
| | - Bastian Grabe
- Fakultät
für Chemie und Chemische Biologie, Technische Universität Dortmund, Otto-Hahn-Straße 4a, 44227 Dortmund, Germany
| | - Charles C. J. Loh
- Abteilung
Chemische Biologie, Max Planck Institut
für Molekulare Physiologie, Otto-Hahn-Straße 11, 44227 Dortmund, Germany
- Fakultät
für Chemie und Chemische Biologie, Technische Universität Dortmund, Otto-Hahn-Straße 4a, 44227 Dortmund, Germany
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Pale P, Mamane V. Chalcogen Bonding Catalysis: Tellurium, the Last Frontier? Chemistry 2023:e202302755. [PMID: 37743816 DOI: 10.1002/chem.202302755] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Revised: 09/22/2023] [Accepted: 09/25/2023] [Indexed: 09/26/2023]
Abstract
Chalcogen bonding (ChB) is the non-covalent interaction occurring between chalcogen atoms as Lewis acid sites and atoms or groups of atoms able to behave as Lewis bases through their lone pair or π electrons. Analogously to its sister halogen bonding, the high directionality of this interaction was implemented for precise structural organizations in the solid state and in solution. Regarding catalysis, ChB is now accepted as a new mode of activation as demonstrated by the increased number of examples in the last five years. In the family of ChB catalysts, those based on tellurium rapidly appeared to overcome their lighter sulfur and selenium counterparts. In this review, we highlight the Lewis acid properties of tellurium-based derivatives in solution and summarize the start-of-the-art of their applications in catalysis.
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Affiliation(s)
- Patrick Pale
- Institute of Chemistry of Strasbourg, UMR 7177-LASYROC, CNRS and Strasbourg University, 4 rue Blaise Pascal, 67000, Strasbourg, France
| | - Victor Mamane
- Institute of Chemistry of Strasbourg, UMR 7177-LASYROC, CNRS and Strasbourg University, 4 rue Blaise Pascal, 67000, Strasbourg, France
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Ángel AYB, Campos PRO, Alberto EE. Selenonium Salt as a Catalyst for Nucleophilic Substitution Reactions in Water: Synthesis of Thiocyanites and Selenocyanates. Molecules 2023; 28:molecules28073056. [PMID: 37049818 PMCID: PMC10095699 DOI: 10.3390/molecules28073056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2023] [Revised: 03/24/2023] [Accepted: 03/26/2023] [Indexed: 04/03/2023] Open
Abstract
Organothiocyanates and selenocyanates are valuable compounds, both in terms of functional group interconversion and due to their biological activities. In this contribution, we report the synthesis of a series of these important substances in a mixture of water and dimethyl carbonate (20/1 proportion) using potassium thio- or selenocyanates salts and organic bromides. The key to the effectiveness of the reaction is a chalcogen bond interaction between a selenonium salt catalyst and the organic substrate.
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Non-Covalent Catalysts. Catalysts 2023. [DOI: 10.3390/catal13020339] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Abstract
The elementary stages of chemical reactions (including catalytic ones) are caused by such weak inter- and intramolecular contacts as hydrogen, halogen, chalcogen, and tetrel bonds as well as stacking (and other π-system-involved) interactions [...]
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Bastidas Ángel AY, Campos PRO, Alberto EE. Synthetic application of chalcogenonium salts: beyond sulfonium. Org Biomol Chem 2023; 21:223-236. [PMID: 36503911 DOI: 10.1039/d2ob01822e] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
The application of chalcogenonium salts in organic synthesis has grown enormously in the past decades since the discovery of the methyltransferase enzyme cofactor S-adenosyl-L-methionine (SAM), featuring a sulfonium center as the reactive functional group. Chalcogenonium salts can be employed as alkylating agents, sources of ylides and carbon-centered radicals, partners for metal-catalyzed cross-coupling reactions and organocatalysts. Herein, we will focus the discussion on heavier chalcogenonium salts (selenonium and telluronium), presenting their utility in synthetic organic transformations and, whenever possible, drawing comparisons in terms of reactivity and selectivity with the respective sulfonium analogues.
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Affiliation(s)
- Alix Y Bastidas Ángel
- Grupo de Síntese e Catálise Orgânica - GSCO, Departamento de Química, Universidade Federal de Minas Gerais - UFMG, 31.270-901, Belo Horizonte, MG, Brazil.
| | - Philipe Raphael O Campos
- Grupo de Síntese e Catálise Orgânica - GSCO, Departamento de Química, Universidade Federal de Minas Gerais - UFMG, 31.270-901, Belo Horizonte, MG, Brazil.
| | - Eduardo E Alberto
- Grupo de Síntese e Catálise Orgânica - GSCO, Departamento de Química, Universidade Federal de Minas Gerais - UFMG, 31.270-901, Belo Horizonte, MG, Brazil.
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