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Rai S, Kaur V, Kaur C, Sharma M, Sen T. DNA origami-templated individual gold nanoclusters: probing their photophysical dynamics using single-molecule fluorescence spectroscopy. NANOSCALE 2025; 17:7180-7192. [PMID: 39976530 DOI: 10.1039/d4nr04887c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/25/2025]
Abstract
Single-molecule fluorescence microscopy demands ultrahigh stability of single fluorophores with less photobleaching and essentially no intensity fluctuations on experimentally relevant time scales. In this respect, there is a need to design fluorescent probes with excellent photostability and long-lived dark transient states. Herein, we report the site-specific synthesis of gold nanoclusters (Au NCs) on DNA origami. Rectangular DNA origami bearing a poly-cytosine sequence in the centre was used as a template to guide the in situ synthesis of Au NCs. The photophysical properties of DNA-templated AuNCs were extensively studied using single-molecule confocal fluorescence microscopy, which revealed the average on-time and off-time of 0.08 seconds and 0.05 seconds, respectively. Photon antibunching measurements confirmed the existence of single Au NCs in the confocal volume and fluorescence transient studies revealed their excellent brightness and remarkable photostability with long survival times and less blinking. Such DNA-templated Au NCs with ultrahigh photostability, intense brightness, and low toxicity have tremendous potential to be used as probes in single-molecule dynamics measurements on biologically relevant timescales. The precise addressability of DNA origami nanostructures provides the controlled attachment of various biomolecules specifically at a predesigned location on the origami template, allowing such platforms to be used for single nanocatalysis as well as performing imaging and sensing studies at the single-molecule level.
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Affiliation(s)
- Shikha Rai
- Institute of Nano Science and Technology, Sector-81, Mohali, Punjab-140306, India.
| | - Vishaldeep Kaur
- Institute of Nano Science and Technology, Sector-81, Mohali, Punjab-140306, India.
| | - Charanleen Kaur
- Institute of Nano Science and Technology, Sector-81, Mohali, Punjab-140306, India.
| | - Mridu Sharma
- Institute of Nano Science and Technology, Sector-81, Mohali, Punjab-140306, India.
| | - Tapasi Sen
- Institute of Nano Science and Technology, Sector-81, Mohali, Punjab-140306, India.
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2
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Maity S, Kolay S, Chakraborty S, Devi A, Rashi, Patra A. A comprehensive review of atomically precise metal nanoclusters with emergent photophysical properties towards diverse applications. Chem Soc Rev 2025; 54:1785-1844. [PMID: 39670813 DOI: 10.1039/d4cs00962b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2024]
Abstract
Atomically precise metal nanoclusters (MNCs) composed of a few to hundreds of metal atoms represent an emerging class of nanomaterials with a precise composition. With the size approaching the Fermi wavelength of electrons, their energy levels are well-separated, leading to molecule-like properties, like discrete single electronic transitions, tunable photoluminescence (PL), inherent structural anisotropy, and distinct redox behavior. Extensive synthetic efforts and electronic structure revelation have expanded applicability of MNCs in catalysis, optoelectronics, and biology. This review highlights the intriguing photophysical and electrochemical behaviors of MNCs and their regulatory parameters and applications. Initially, we present a brief discussion on the evolution of MNCs from gas-phase naked metal clusters to monolayer ligand-protected MNCs along with representative studies on their electronic structure. Due to their quantized molecular orbitals, they often exhibit PL, which can be regulated based on their capping ligands, number of atoms, crystal packing, presence of heterometal, and surrounding environment. Apart from PL, the relaxation pathways of MNCs on an ultrafast time scale have been extensively studied, which significantly differ from that of plasmonic metal nanoparticles. Moreover, their interaction with high-intensity light results in unique non-linear optical properties. The synergy between MNCs in a hierarchical self-assembled structure has been exploited to enhance their PL by precisely tuning their non-covalent interactions. Moreover, several NC-based hybrids have been designed to exhibit efficient electron or energy transfer in the photoexcited state. In the next section, we briefly focus on the redox behavior of NCs and facile electron transfer to suitable substrates, which result in enzyme-like catalytic activity. Utilizing these photophysical and electrochemical behaviors, NCs are widely employed in catalysis, optical sensing, and light-harvesting applications, which are also discussed in this review. In the final section, conclusions and open questions for the NC research community are included. This review will provide a comprehensive view of the emerging physicochemical properties of MNCs, thereby enabling an understanding for their precise modulation in future.
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Affiliation(s)
- Subarna Maity
- Department of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Sarita Kolay
- School of Materials Sciences, Indian Association for the Cultivation of Science, Kolkata 700032, India.
| | - Sikta Chakraborty
- School of Materials Sciences, Indian Association for the Cultivation of Science, Kolkata 700032, India.
| | - Aarti Devi
- Institute of Nano Science and Technology, Knowledge City, Sector 81, Mohali 140306, India
| | - Rashi
- Institute of Nano Science and Technology, Knowledge City, Sector 81, Mohali 140306, India
| | - Amitava Patra
- School of Materials Sciences, Indian Association for the Cultivation of Science, Kolkata 700032, India.
- Institute of Nano Science and Technology, Knowledge City, Sector 81, Mohali 140306, India
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3
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Kamiyama M, Shingyouchi Y, Sarma R, Ghosh M, Kawawaki T, Biswas S, Negishi Y. Exploring the structural evolution of Cu-thiolate nanoclusters and their property correlations. Chem Commun (Camb) 2025; 61:1048-1062. [PMID: 39660545 DOI: 10.1039/d4cc06139j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2024]
Abstract
Research on copper nanoclusters (Cu NCs) is expanding rapidly due to their remarkable structural versatility and related tunable properties they exhibit. This fast-paced development creates a need for a comprehensive overview of the structural evolution of Cu NCs, especially regarding how different geometric configurations emerge from variations in the ligand choice. In light of this, this feature article focuses on the role of thiolate ligands in shaping the structural and electronic properties of Cu NCs, with a particular emphasis on how modifications of ligands influence the geometry of NCs. While thiolates play a central role in stabilizing Cu NCs, this feature article also underscores the significance of co-ligands-such as hydrides, phosphines, and halides-because relying solely on thiolates is often insufficient to fully protect the surface of Cu NCs, unlike in the case of gold or silver NCs. A detailed analysis of how various thiolates and co-ligands affect core geometry reveals a direct correlation with the electronic properties of Cu NCs, which in turn influences their optical behavior. By examining these ligand-driven structural and electronic changes, this feature article aims to provide a deeper understanding of the relationship between ligand design and the resulting NC properties. The ultimate goal is to offer a strategy for the rational design of Cu NCs with tailored functionalities, thereby advancing NC chemistry and opening up new possibilities for applications in optoelectronics, catalysis, and sensing.
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Affiliation(s)
- Maho Kamiyama
- Department of Applied Chemistry, Faculty of Science, Tokyo University of Science, Kagurazaka, Shinjuku-ku, Tokyo 162-8601, Japan
| | - Yamato Shingyouchi
- Department of Applied Chemistry, Faculty of Science, Tokyo University of Science, Kagurazaka, Shinjuku-ku, Tokyo 162-8601, Japan
| | - Rupa Sarma
- Research Institute for Science & Technology, Tokyo University of Science, Tokyo 162-8601, Japan
| | - Mandira Ghosh
- Research Institute for Science & Technology, Tokyo University of Science, Tokyo 162-8601, Japan
| | - Tokuhisa Kawawaki
- Department of Applied Chemistry, Faculty of Science, Tokyo University of Science, Kagurazaka, Shinjuku-ku, Tokyo 162-8601, Japan
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Katahira 2-1-1, Aoba-ku, Sendai 980-8577, Japan.
| | - Sourav Biswas
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Katahira 2-1-1, Aoba-ku, Sendai 980-8577, Japan.
| | - Yuichi Negishi
- Research Institute for Science & Technology, Tokyo University of Science, Tokyo 162-8601, Japan
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Katahira 2-1-1, Aoba-ku, Sendai 980-8577, Japan.
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Bose P, Srikrishnarka P, Paatelainen M, Nonappa, Kini AR, Som A, Pradeep T. Nanocluster reaction-driven in situ transformation of colloidal nanoparticles to mesostructures. NANOSCALE 2025; 17:803-812. [PMID: 39377419 DOI: 10.1039/d4nr02820a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/09/2024]
Abstract
Atomically precise noble metal nanoclusters (NCs) are molecular materials known for their precise composition, electronic structure, and unique optical properties, exhibiting chemical reactivity. Herein, we demonstrated a simple one-pot method for fabricating self-assembled Ag-Au bimetallic mesostructures using a reaction between 2-phenylethanethiol (PET)-protected atomically precise gold NCs and colloidal silver nanoparticles (Ag NPs) in a tunable reaction microenvironment. The reaction carried out in toluene at 45 °C with constant stirring at 250 revolutions per minute (RPM) yielded a thermally stable, micron-sized cuboidal mesocrystals of self-assembled AgAu@PET nanocrystals. However, the reaction in dichloromethane at room temperature with constant stirring at 250 RPM resulted in a self-assembled mesostructure of randomly close-packed AgAu@PET NPs. Using a host of experimental techniques, including optical and electron microscopy, optical absorption spectroscopy, and light scattering, we studied the nucleation and growth processes. Our findings highlight a strategy to utilize precision and plasmonic NP chemistry in tailored microenvironments, leading to customizable bimetallic hybrid three-dimensional nanomaterials with potential applications.
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Affiliation(s)
- Paulami Bose
- DST Unit of Nanoscience (DST UNS) and Thematic Unit of Excellence (TUE), Department of Chemistry, Indian Institute of Technology Madras, Chennai 600 036, India.
| | - Pillalamarri Srikrishnarka
- DST Unit of Nanoscience (DST UNS) and Thematic Unit of Excellence (TUE), Department of Chemistry, Indian Institute of Technology Madras, Chennai 600 036, India.
| | - Matias Paatelainen
- Faculty of Engineering and Natural Sciences, Tampere University, Korkeakoulunkatu 3, FI-33720, Tampere, Finland
| | - Nonappa
- Faculty of Engineering and Natural Sciences, Tampere University, Korkeakoulunkatu 3, FI-33720, Tampere, Finland
| | - Amoghavarsha Ramachandra Kini
- DST Unit of Nanoscience (DST UNS) and Thematic Unit of Excellence (TUE), Department of Chemistry, Indian Institute of Technology Madras, Chennai 600 036, India.
| | - Anirban Som
- DST Unit of Nanoscience (DST UNS) and Thematic Unit of Excellence (TUE), Department of Chemistry, Indian Institute of Technology Madras, Chennai 600 036, India.
| | - Thalappil Pradeep
- DST Unit of Nanoscience (DST UNS) and Thematic Unit of Excellence (TUE), Department of Chemistry, Indian Institute of Technology Madras, Chennai 600 036, India.
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Ahmed AAA, Havenridge S, Sahoo K, Thapa L, Baksi A, Clever GH, Noei H, Kohantorabi M, Stierle A, Raj CR, Parak WJ, Aikens CM, Chakraborty I. Effect of Ni-Doping on the Optical, Structural, and Electrochemical Properties of Ag 29 Nanoclusters. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2025; 21:e2408096. [PMID: 39580690 PMCID: PMC11735891 DOI: 10.1002/smll.202408096] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2024] [Revised: 10/22/2024] [Indexed: 11/26/2024]
Abstract
Atomically precise metal nanoclusters (NCs) can be compositionally controlled at the single-atom level, but understanding structure-property correlations is required for tailoring specific optical properties. Here, the impact of Ni atom doping on the optical, structural, and electrochemical properties of atomically precise 1,3-benzene dithiol (BDT) protected Ag29 NCs is studied. The Ni-doped Ag29 (NiAg28(BDT)12) NCs, are synthesized using a co-reduction method and characterized using electrospray ionization mass spectrometry (ESI MS), ion mobility spectrometry (IMS), and X-ray photoelectron spectroscopy (XPS). Only a single Ni atom doping can be achieved despite changing the precursor concentration. Ni doping in Ag29 NCs exhibits enhanced thermal stability, and electrocatalytic oxygen evolution reaction (OER) compared to the parent NCs. Density functional theory (DFT) calculations predict the geometry and optical properties of the parent and NiAg28(BDT)12 NCs. DFT is also used to study the systematic single-atom doping effect of metals such as Au, Cu, and Pt into Ag29 NCs and suggests that with Ni and Pt, the d atomic orbitals contribute to creating superatomic orbitals, which is not seen with other dopants or the parent cluster. The emission mechanism is dominated by a charge transfer from the ligands into the Ag core cluster regardless of the dopant.
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Affiliation(s)
- Abdullah A. A. Ahmed
- Center for Hybrid Nanostructures (CHyN) and Fachbereich PhysikUniversität Hamburg22607HamburgGermany
- Department of PhysicsFaculty of Applied ScienceThamar UniversityDhamar87246Yemen
| | - Shana Havenridge
- Department of ChemistryKansas State UniversityManhattanKS66506USA
| | - Koustav Sahoo
- School of Nano Science and TechnologyIndian Institute of Technology KharagpurKharagpur721302India
| | - Loknath Thapa
- Functional Materials and Electrochemistry LabDepartment of ChemistryIndian Institute of Technology KharagpurKharagpur721302India
| | - Ananya Baksi
- Department of Chemistry and Chemical BiologyTU Dortmund University44227DortmundGermany
| | - Guido H. Clever
- Department of Chemistry and Chemical BiologyTU Dortmund University44227DortmundGermany
| | - Heshmat Noei
- DESY NanoLabDeutsches Elektronen Synchrotron (DESY)22607HamburgGermany
- Fachbereich PhysikUniversity of Hamburg20148HamburgGermany
| | - Mona Kohantorabi
- DESY NanoLabDeutsches Elektronen Synchrotron (DESY)22607HamburgGermany
- Fachbereich PhysikUniversity of Hamburg20148HamburgGermany
| | - Andreas Stierle
- DESY NanoLabDeutsches Elektronen Synchrotron (DESY)22607HamburgGermany
- Fachbereich PhysikUniversity of Hamburg20148HamburgGermany
| | - C. Retna Raj
- Functional Materials and Electrochemistry LabDepartment of ChemistryIndian Institute of Technology KharagpurKharagpur721302India
| | - Wolfgang J. Parak
- Center for Hybrid Nanostructures (CHyN) and Fachbereich PhysikUniversität Hamburg22607HamburgGermany
| | | | - Indranath Chakraborty
- Center for Hybrid Nanostructures (CHyN) and Fachbereich PhysikUniversität Hamburg22607HamburgGermany
- School of Nano Science and TechnologyIndian Institute of Technology KharagpurKharagpur721302India
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6
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Debnath S, Giri S, Mani G. Selective synthesis of the missing tiara-like Ni 10, Ni 5 and Ni 6 thiolates by the C-S bond cleavage of bis(thioether) molecules with a DFT study. Dalton Trans 2024; 53:14875-14886. [PMID: 39189101 DOI: 10.1039/d4dt02047b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/28/2024]
Abstract
A series of new bis(phenylthioether) and bis(benzylthioether) compounds (L1-L5) having hexahydropyrimidine, imidazolidine and dihydroperimidine backbones were synthesized. Instead of giving NHC complexes, these compounds undergo facile C-S bond cleavages upon treatment with Ni(II) salts to selectively give new toroidal Ni(II) thiolates: [Ni10(SPh)20] (1) and [Ni5(SCH2Ph)10] (5), and the known [Ni6(SCH2Ph)12] (8), as confirmed by single crystal X-ray diffraction studies. By-products such as RSSR (R = Ph and CH2Ph) and partially C-S bond cleaved starting compounds were isolated or detected as well from these reactions. The C-S bond cleavage does not take place with L5 having the dihydroperimidine backbone and a plausible mechanism is proposed based on by-products isolated or detected. DFT calculations give insights into the electronic structures of these ring systems and the nature of bonding with which a dichloromethane is present inside the cavity of 1. Experimentally observed absorption spectra of 1, 5 and 8 match with the calculated spectra.
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Affiliation(s)
- Suparno Debnath
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur, 721302 India.
| | - Sandip Giri
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur, 721302 India.
| | - Ganesan Mani
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur, 721302 India.
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Pan X, Yao Y, Zhang M, Yuan X, Yao Q, Hu W. Enzyme-mimic catalytic activities and biomedical applications of noble metal nanoclusters. NANOSCALE 2024; 16:8196-8215. [PMID: 38572762 DOI: 10.1039/d4nr00282b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/05/2024]
Abstract
Noble metal (e.g., Au and Ag) nanoclusters (NCs), which exhibit structural complexity and hierarchy comparable to those of natural proteins, have been increasingly pursued in artificial enzyme research. The protein-like structure of metal NCs not only ensures enzyme-mimic catalytic activity, including peroxidase-, catalase-, and superoxide dismutase-mimic activities, but also affords an unprecedented opportunity to correlate the catalytic performance with the cluster structure at the molecular or atomic levels. In this review, we aim to summarize the recent progress in programming and demystify the enzyme-mimic catalytic activity of metal NCs, presenting the state-of-the-art understandings of the structure-property relationship of metal NC-based artificial enzymes. By leveraging on a concise anatomy of the hierarchical structure of noble metal NCs, we manage to unravel the structural origin of the catalytic performance of metal NCs. Noteworthily, it has been proven that the surface ligands and metal-ligand interface of metal NCs are instrumental in influencing enzyme-mimic catalytic activities. In addition to the structure-property correlation, we also discuss the synthetic methodologies feasible to tailoring the cluster structure at the atomic level. Prior to the closure of this review with our perspectives in noble metal NC-based artificial enzymes, we also exemplify the biomedical applications based on the enzyme-mimic catalysis of metal NCs with the theranostics of kidney injury, brain inflammation, and tumors. The fundamental and methodological advancements delineated in this review would be conducive to further development of metal NCs as an alternative family of artificial enzymes.
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Affiliation(s)
- Xinxin Pan
- Key Laboratory of Organic Integrated Circuits, Ministry of Education & Tianjin Key Laboratory of Molecular Optoelectronic Sciences, Department of Chemistry, School of Science, Tianjin University, Tianjin 300072, China
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin 300072, China
| | - Yidan Yao
- Key Laboratory of Organic Integrated Circuits, Ministry of Education & Tianjin Key Laboratory of Molecular Optoelectronic Sciences, Department of Chemistry, School of Science, Tianjin University, Tianjin 300072, China
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin 300072, China
| | - Manxi Zhang
- Joint School of National University of Singapore and Tianjin University International Campus of Tianjin University Binhai New City, Fuzhou 350207, P. R. China
| | - Xun Yuan
- School of Materials Science and Engineering, Qingdao University of Science and Technology, Qingdao, 266042, China
| | - Qiaofeng Yao
- Key Laboratory of Organic Integrated Circuits, Ministry of Education & Tianjin Key Laboratory of Molecular Optoelectronic Sciences, Department of Chemistry, School of Science, Tianjin University, Tianjin 300072, China
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin 300072, China
| | - Wenping Hu
- Key Laboratory of Organic Integrated Circuits, Ministry of Education & Tianjin Key Laboratory of Molecular Optoelectronic Sciences, Department of Chemistry, School of Science, Tianjin University, Tianjin 300072, China
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin 300072, China
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