Convolutional neural network-based colloidal self-assembly state classification

Siamese neural network improves the performance of a convolutional neural network in colloidal self-assembly state classification

Identifying the state of the colloidal self-assembly process is critical to monitoring and controlling the system into desired configurations. Recent application of convolutional neural networks with unsupervised clustering has shown a comparable performance to conventional approaches, in representing and classifying the states of a simulated 2D colloidal batch assembly system. Despite the early success, capturing the subtle differences among similar configurations still presents a challenge. To address this issue, we leverage a Siamese neural network to improve the accuracy of the state classification. Results from a Brownian dynamics-simulated electric field-mediated colloidal self-assembly system and a magnetic field-mediated colloidal self-assembly system demonstrate significant improvement from the original convolutional neural network-based approach. We anticipate the proposed improvement to further pave the way for automated monitoring and control of colloidal self-assembly processes in real time and real space.

Convolutional neural networks applied to differential dynamic microscopy reduces noise when quantifying heterogeneous dynamics

Differential dynamic microscopy (DDM) typically relies on movies containing hundreds or thousands of frames to accurately quantify motion in soft matter systems. Using movies much shorter in duration produces noisier and less accurate results. This limits the applicability of DDM to situations where the dynamics are stationary over extended times. Here, we investigate a method to denoise the DDM process, particularly suited to when a limited number of imaging frames are available or when dynamics are quickly evolving in time. We use a convolutional neural network encoder-decoder (CNN-ED) model to reduce the noise in the intermediate scattering function that is computed via DDM. We demonstrate this approach of combining machine learning and DDM on samples containing diffusing micron-sized colloidal particles. We quantify how the particles' diffusivities change over time as the fluid they are suspended in gels. We also quantify how the diffusivity of particles varies with position in a sample containing a viscosity gradient. These test cases demonstrate how studies of non-equilibrium dynamics and high-throughput screens could benefit from a method to denoise the outputs of DDM.

Classification of complex local environments in systems of particle shapes through shape symmetry-encoded data augmentation

Detecting and analyzing the local environment is crucial for investigating the dynamical processes of crystal nucleation and shape colloidal particle self-assembly. Recent developments in machine learning provide a promising avenue for better order parameters in complex systems that are challenging to study using traditional approaches. However, the application of machine learning to self-assembly on systems of particle shapes is still underexplored. To address this gap, we propose a simple, physics-agnostic, yet powerful approach that involves training a multilayer perceptron (MLP) as a local environment classifier for systems of particle shapes, using input features such as particle distances and orientations. Our MLP classifier is trained in a supervised manner with a shape symmetry-encoded data augmentation technique without the need for any conventional roto-translations invariant symmetry functions. We evaluate the performance of our classifiers on four different scenarios involving self-assembly of cubic structures, two-dimensional and three-dimensional patchy particle shape systems, hexagonal bipyramids with varying aspect ratios, and truncated shapes with different degrees of truncation. The proposed training process and data augmentation technique are both straightforward and flexible, enabling easy application of the classifier to other processes involving particle orientations. Our work thus presents a valuable tool for investigating self-assembly processes on systems of particle shapes, with potential applications in structure identification of any particle-based or molecular system where orientations can be defined.