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Costa EP, Façanha AR, Cruz CS, Silva JN, Machado JA, Carvalho GM, Fernandes MR, Martins R, Campos E, Romeiro NC, Githaka NW, Konnai S, Ohashi K, Vaz IS, Logullo C. A novel mechanism of functional cooperativity regulation by thiol redox status in a dimeric inorganic pyrophosphatase. Biochim Biophys Acta Gen Subj 2016; 1861:2922-2933. [PMID: 27664315 DOI: 10.1016/j.bbagen.2016.09.017] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2016] [Revised: 08/30/2016] [Accepted: 09/18/2016] [Indexed: 12/22/2022]
Abstract
BACKGROUND Inorganic PPases are essential metal-dependent enzymes that convert pyrophosphate into orthophosphate. This reaction is quite exergonic and provides a thermodynamic advantage for many ATP-driven biosynthetic reactions. We have previously demonstrated that cytosolic PPase from R. microplus embryos is an atypical Family I PPase. Here, we explored the functional role of the cysteine residues located at the homodimer interface, its redox sensitivity, as well as structural and kinetic parameters related to thiol redox status. METHODS In this work, we used prokaryotic expression system for recombinant protein overexpression, biochemical approaches to assess kinetic parameters, ticks embryos and computational approaches to analyze and predict critical amino acids as well as physicochemical properties at the homodimer interface. RESULTS Cysteine 339, located at the homodimer interface, was found to play an important role in stabilizing a functional cooperativity between the two catalytic sites, as indicated by kinetics and Hill coefficient analyses of the WT-rBmPPase. WT-rBmPPase activity was up-regulated by physiological antioxidant molecules such as reduced glutathione and ascorbic acid. On the other hand, hydrogen peroxide at physiological concentrations decreased the affinity of WT-rBmPPase for its substrate (PPi), probably by inducing disulfide bridge formation. CONCLUSIONS Our results provide a new angle in understanding redox control by disulfide bonds formation in enzymes from hematophagous arthropods. The reversibility of the down-regulation is dependent on hydrophobic interactions at the dimer interface. GENERAL SIGNIFICANCE This study is the first report on a soluble PPase where dimeric cooperativity is regulated by a redox mechanism, according to cysteine redox status.
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Affiliation(s)
- Evenilton P Costa
- Laboratório de Química e Função de Proteínas e Peptídeos, Laboratório de Biologia Tecidual e Celular and Unidade de Experimentação Animal, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Brazil
| | - Arnoldo R Façanha
- Laboratório de Química e Função de Proteínas e Peptídeos, Laboratório de Biologia Tecidual e Celular and Unidade de Experimentação Animal, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Brazil
| | - Criscila S Cruz
- Laboratório de Química e Função de Proteínas e Peptídeos, Laboratório de Biologia Tecidual e Celular and Unidade de Experimentação Animal, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Brazil; Laboratório Integrado de Bioquímica Hatisaburo Masuda, Laboratório Integrado de Computação Científica, Núcleo de Pesquisas em Ecologia e Desenvolvimento Sócio-Ambiental de Macaé (NUPEM), Universidade Federal do Rio de Janeiro, Macaé, Brazil
| | - Jhenifer N Silva
- Laboratório de Química e Função de Proteínas e Peptídeos, Laboratório de Biologia Tecidual e Celular and Unidade de Experimentação Animal, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Brazil
| | - Josias A Machado
- Laboratório de Química e Função de Proteínas e Peptídeos, Laboratório de Biologia Tecidual e Celular and Unidade de Experimentação Animal, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Brazil
| | - Gabriel M Carvalho
- Laboratório de Química e Função de Proteínas e Peptídeos, Laboratório de Biologia Tecidual e Celular and Unidade de Experimentação Animal, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Brazil
| | - Mariana R Fernandes
- Laboratório de Química e Função de Proteínas e Peptídeos, Laboratório de Biologia Tecidual e Celular and Unidade de Experimentação Animal, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Brazil
| | - Renato Martins
- Laboratório de Química e Função de Proteínas e Peptídeos, Laboratório de Biologia Tecidual e Celular and Unidade de Experimentação Animal, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Brazil
| | - Eldo Campos
- Laboratório Integrado de Bioquímica Hatisaburo Masuda, Laboratório Integrado de Computação Científica, Núcleo de Pesquisas em Ecologia e Desenvolvimento Sócio-Ambiental de Macaé (NUPEM), Universidade Federal do Rio de Janeiro, Macaé, Brazil
| | - Nelilma C Romeiro
- Laboratório Integrado de Bioquímica Hatisaburo Masuda, Laboratório Integrado de Computação Científica, Núcleo de Pesquisas em Ecologia e Desenvolvimento Sócio-Ambiental de Macaé (NUPEM), Universidade Federal do Rio de Janeiro, Macaé, Brazil
| | - Naftaly W Githaka
- Tick Unit, International Livestock Research Institute, P.O. Box 30709, Nairobi, Kenya
| | - Satoru Konnai
- Laboratory of Infectious Diseases, Department of Disease Control, Graduate School of Veterinary Medicine, Hokkaido University, Japan
| | - Kazuhiko Ohashi
- Laboratory of Infectious Diseases, Department of Disease Control, Graduate School of Veterinary Medicine, Hokkaido University, Japan
| | - Itabajara S Vaz
- Faculdade de Veterinária e Centro de Biotecnologia do Estado do Rio Grande do Sul, Universidade Federal do Rio Grande do Sul, Brazil
| | - Carlos Logullo
- Laboratório de Química e Função de Proteínas e Peptídeos, Laboratório de Biologia Tecidual e Celular and Unidade de Experimentação Animal, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Brazil.
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Ezure T, Suzuki T, Shikata M, Ito M, Ando E, Nishimura O, Tsunasawa S. Expression of proteins containing disulfide bonds in an insect cell-free system and confirmation of their arrangements by MALDI-TOF MS. Proteomics 2007; 7:4424-34. [DOI: 10.1002/pmic.200700774] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Yamada T, Uyeda A, Kidera A, Kikuchi M. Functional analysis and modeling of a conformationally constrained Arg-Gly-Asp sequence inserted into human lysozyme. Biochemistry 1994; 33:11678-83. [PMID: 7522552 DOI: 10.1021/bi00205a002] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
To examine the effect of a conformational constraint introduced into the Arg-Gly-Asp (RGD) sequence on cell adhesion activity, we have constructed mutant proteins by inserting RGD-containing sequences flanked by two Cys residues between Val74 and Asn75 of human lysozyme. CRGDC-, CRGDSC-, and CGRGDSC-inserted mutant lysozymes were expressed in yeast, purified, and designated as Cys-RGD3, Cys-RGD4, and Cys-RGD5, respectively. In baby hamster kidney cells, these mutants were shown to possess high cell adhesion activity by interaction with vitronectin receptor (integrin alpha v beta 3), and this activity is 2-3-fold higher than that of the RGDS-inserted mutant lysozyme, RGD4. The mutant proteins also inhibited the binding of human fibrinogen to its receptor (integrin alpha IIb beta 3) at a lower concentration than the RGD4 protein. Peptide mapping and mass spectrometric analyses showed that the two inserted Cys residues in these mutants are linked to each other without any effects on the mode of the four disulfide bonds present in native human lysozyme. These results suggest that the introduction of a conformational constraint into the RGD region significantly increases the cell adhesion activity. The conformation of the RGD region in Cys-RGD4 was modeled by a Monte Carlo simulation. Most of the sampled conformations were grouped into three classes; the first is characterized by an extended Gly conformation, the second assumes a type II' beta turn, and the third has a salt bridge between Arg and Asp.(ABSTRACT TRUNCATED AT 250 WORDS)
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Affiliation(s)
- T Yamada
- Protein Engineering Research Institute, Osaka, Japan
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10th International Conference on Methods in Protein Structure Analysis. September 8-13, 1994, Snowbird, Utah. Short communications and abstracts. JOURNAL OF PROTEIN CHEMISTRY 1994; 13:431-543. [PMID: 7945799] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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