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Senosain MF, Zou Y, Novitskaya T, Vasiukov G, Balar AB, Rowe DJ, Doxie DB, Lehman JM, Eisenberg R, Maldonado F, Zijlstra A, Novitskiy SV, Irish JM, Massion PP. HLA-DR cancer cells expression correlates with T cell infiltration and is enriched in lung adenocarcinoma with indolent behavior. Sci Rep 2021; 11:14424. [PMID: 34257356 PMCID: PMC8277797 DOI: 10.1038/s41598-021-93807-3] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Accepted: 06/25/2021] [Indexed: 11/16/2022] Open
Abstract
Lung adenocarcinoma (ADC) is a heterogeneous group of tumors associated with different survival rates, even when detected at an early stage. Here, we aim to investigate whether CyTOF identifies cellular and molecular predictors of tumor behavior. We developed and validated a CyTOF panel of 34 antibodies in four ADC cell lines and PBMC. We tested our panel in a set of 10 ADCs, classified into long- (LPS) (n = 4) and short-predicted survival (SPS) (n = 6) based on radiomics features. We identified cellular subpopulations of epithelial cancer cells (ECC) and their microenvironment and validated our results by multiplex immunofluorescence (mIF) applied to a tissue microarray (TMA) of LPS and SPS ADCs. The antibody panel captured the phenotypical differences in ADC cell lines and PBMC. LPS ADCs had a higher proportion of immune cells. ECC clusters (ECCc) were identified and uncovered two ADC groups. ECCc with high HLA-DR expression were correlated with CD4+ and CD8+ T cells, with LPS samples being enriched for those clusters. We confirmed a positive correlation between HLA-DR expression on ECC and T cell number by mIF staining on TMA slides. Spatial analysis demonstrated shorter distances from T cells to the nearest ECC in LPS. Our results demonstrate a distinctive cellular profile of ECC and their microenvironment in ADC. We showed that HLA-DR expression in ECC is correlated with T cell infiltration, and that a set of ADCs with high abundance of HLA-DR+ ECCc and T cells is enriched in LPS samples. This suggests new insights into the role of antigen presenting tumor cells in tumorigenesis.
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Affiliation(s)
- Maria-Fernanda Senosain
- Cancer Biology Graduate Program, Vanderbilt University, Nashville, TN, USA.
- Division of Allergy, Pulmonary, and Critical Care Medicine, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
- Cancer Early Detection and Prevention Initiative, Vanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, TN, USA.
| | - Yong Zou
- Division of Allergy, Pulmonary, and Critical Care Medicine, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA
- Cancer Early Detection and Prevention Initiative, Vanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, TN, USA
| | - Tatiana Novitskaya
- Department of Pathology, Microbiology and Immunology, Vanderbilt University Medical Center, Nashville, TN, USA
| | - Georgii Vasiukov
- Division of Allergy, Pulmonary, and Critical Care Medicine, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA
- Department of Pathology, Microbiology and Immunology, Vanderbilt University Medical Center, Nashville, TN, USA
| | - Aneri B Balar
- Division of Allergy, Pulmonary, and Critical Care Medicine, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA
- Cancer Early Detection and Prevention Initiative, Vanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, TN, USA
| | - Dianna J Rowe
- Division of Allergy, Pulmonary, and Critical Care Medicine, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA
- Cancer Early Detection and Prevention Initiative, Vanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, TN, USA
| | - Deon B Doxie
- Vanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, TN, USA
- Department of Cell and Developmental Biology, Vanderbilt University, Nashville, TN, USA
| | - Jonathan M Lehman
- Division of Hematology/Oncology, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA
| | - Rosana Eisenberg
- Department of Pathology, Microbiology and Immunology, Vanderbilt University Medical Center, Nashville, TN, USA
| | - Fabien Maldonado
- Division of Allergy, Pulmonary, and Critical Care Medicine, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA
| | - Andries Zijlstra
- Department of Pathology, Microbiology and Immunology, Vanderbilt University Medical Center, Nashville, TN, USA
| | - Sergey V Novitskiy
- Department of Pathology, Microbiology and Immunology, Vanderbilt University Medical Center, Nashville, TN, USA
| | - Jonathan M Irish
- Vanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, TN, USA
- Department of Cell and Developmental Biology, Vanderbilt University, Nashville, TN, USA
- Department of Pathology, Microbiology and Immunology, Vanderbilt University Medical Center, Nashville, TN, USA
| | - Pierre P Massion
- Division of Allergy, Pulmonary, and Critical Care Medicine, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA
- Cancer Early Detection and Prevention Initiative, Vanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, TN, USA
- US Department of Veterans Affairs, Tennessee Valley Healthcare System, Nashville, TN, USA
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6
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Huang P, Park S, Yan R, Lee J, Chu LC, Lin CT, Hussien A, Rathmell J, Thomas B, Chen C, Hales R, Ettinger DS, Brock M, Hu P, Fishman EK, Gabrielson E, Lam S. Added Value of Computer-aided CT Image Features for Early Lung Cancer Diagnosis with Small Pulmonary Nodules: A Matched Case-Control Study. Radiology 2018; 286:286-295. [PMID: 28872442 PMCID: PMC5779085 DOI: 10.1148/radiol.2017162725] [Citation(s) in RCA: 99] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Purpose To test whether computer-aided diagnosis (CAD) approaches can increase the positive predictive value (PPV) and reduce the false-positive rate in lung cancer screening for small nodules compared with human reading by thoracic radiologists. Materials and Methods A matched case-control sample of low-dose computed tomography (CT) studies in 186 participants with 4-20-mm noncalcified lung nodules who underwent biopsy in the National Lung Screening Trial (NLST) was selected. Variables used for matching were age, sex, smoking status, chronic obstructive pulmonary disease status, body mass index, study year of the positive screening test, and screening results. Studies before lung biopsy were randomly split into a training set (70 cancers plus 70 benign controls) and a validation set (20 cancers plus 26 benign controls). Image features from within and outside dominant nodules were extracted. A CAD algorithm developed from the training set and a random forest classifier were applied to the validation set to predict biopsy outcomes. Receiver operating characteristic analysis was used to compare the prediction accuracy of CAD with the NLST investigator's diagnosis and readings from three experienced and board-certified thoracic radiologists who used contemporary clinical practice guidelines. Results In the validation cohort, the area under the receiver operating characteristic curve for CAD was 0.9154. By default, the sensitivity, specificity, and PPV of the NLST investigators were 1.00, 0.00, and 0.43, respectively. The sensitivity, specificity, PPV, and negative predictive value of CAD and the three radiologists' combined reading were 0.95, 0.88, 0.86, and 0.96 and 0.70, 0.69, 0.64, and 0.75, respectively. Conclusion CAD could increase PPV and reduce the false-positive rate in the early diagnosis of lung cancer. © RSNA, 2017 Online supplemental material is available for this article.
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Affiliation(s)
- Peng Huang
- From the Departments of Oncology (P. Huang, D.S.E.), Radiology (E.K.F.,
L.C.C., C.T.L., A.H.), Radiation Oncology and Molecular Radiation Sciences (S.P.,
J.L., R.H.), Surgery (M.B.), Pathology (E.G.), and Biostatistics (J.S.), Johns
Hopkins University School of Medicine, 550 N Broadway, Suite 1103, Baltimore, MD
21205; Department of Medicine, the University of British Columbia, Vancouver, BC,
Canada (S.L.); Information Management Services, Rockville, Md (J.R., B.T.); Biometry
Research Group, National Cancer Institute, Bethesda, Md (P. Hu); Department of
Radiology, Nongken General Hospital of Hainan Medical University, Haikou, Hainan,
China (R.Y.); and Department of Thoracic Surgery, the Second Xiangya Hospital,
Central South University, Changsha, Hunan, China (C.C.)
| | - Seyoun Park
- From the Departments of Oncology (P. Huang, D.S.E.), Radiology (E.K.F.,
L.C.C., C.T.L., A.H.), Radiation Oncology and Molecular Radiation Sciences (S.P.,
J.L., R.H.), Surgery (M.B.), Pathology (E.G.), and Biostatistics (J.S.), Johns
Hopkins University School of Medicine, 550 N Broadway, Suite 1103, Baltimore, MD
21205; Department of Medicine, the University of British Columbia, Vancouver, BC,
Canada (S.L.); Information Management Services, Rockville, Md (J.R., B.T.); Biometry
Research Group, National Cancer Institute, Bethesda, Md (P. Hu); Department of
Radiology, Nongken General Hospital of Hainan Medical University, Haikou, Hainan,
China (R.Y.); and Department of Thoracic Surgery, the Second Xiangya Hospital,
Central South University, Changsha, Hunan, China (C.C.)
| | - Rongkai Yan
- From the Departments of Oncology (P. Huang, D.S.E.), Radiology (E.K.F.,
L.C.C., C.T.L., A.H.), Radiation Oncology and Molecular Radiation Sciences (S.P.,
J.L., R.H.), Surgery (M.B.), Pathology (E.G.), and Biostatistics (J.S.), Johns
Hopkins University School of Medicine, 550 N Broadway, Suite 1103, Baltimore, MD
21205; Department of Medicine, the University of British Columbia, Vancouver, BC,
Canada (S.L.); Information Management Services, Rockville, Md (J.R., B.T.); Biometry
Research Group, National Cancer Institute, Bethesda, Md (P. Hu); Department of
Radiology, Nongken General Hospital of Hainan Medical University, Haikou, Hainan,
China (R.Y.); and Department of Thoracic Surgery, the Second Xiangya Hospital,
Central South University, Changsha, Hunan, China (C.C.)
| | - Junghoon Lee
- From the Departments of Oncology (P. Huang, D.S.E.), Radiology (E.K.F.,
L.C.C., C.T.L., A.H.), Radiation Oncology and Molecular Radiation Sciences (S.P.,
J.L., R.H.), Surgery (M.B.), Pathology (E.G.), and Biostatistics (J.S.), Johns
Hopkins University School of Medicine, 550 N Broadway, Suite 1103, Baltimore, MD
21205; Department of Medicine, the University of British Columbia, Vancouver, BC,
Canada (S.L.); Information Management Services, Rockville, Md (J.R., B.T.); Biometry
Research Group, National Cancer Institute, Bethesda, Md (P. Hu); Department of
Radiology, Nongken General Hospital of Hainan Medical University, Haikou, Hainan,
China (R.Y.); and Department of Thoracic Surgery, the Second Xiangya Hospital,
Central South University, Changsha, Hunan, China (C.C.)
| | - Linda C. Chu
- From the Departments of Oncology (P. Huang, D.S.E.), Radiology (E.K.F.,
L.C.C., C.T.L., A.H.), Radiation Oncology and Molecular Radiation Sciences (S.P.,
J.L., R.H.), Surgery (M.B.), Pathology (E.G.), and Biostatistics (J.S.), Johns
Hopkins University School of Medicine, 550 N Broadway, Suite 1103, Baltimore, MD
21205; Department of Medicine, the University of British Columbia, Vancouver, BC,
Canada (S.L.); Information Management Services, Rockville, Md (J.R., B.T.); Biometry
Research Group, National Cancer Institute, Bethesda, Md (P. Hu); Department of
Radiology, Nongken General Hospital of Hainan Medical University, Haikou, Hainan,
China (R.Y.); and Department of Thoracic Surgery, the Second Xiangya Hospital,
Central South University, Changsha, Hunan, China (C.C.)
| | - Cheng T. Lin
- From the Departments of Oncology (P. Huang, D.S.E.), Radiology (E.K.F.,
L.C.C., C.T.L., A.H.), Radiation Oncology and Molecular Radiation Sciences (S.P.,
J.L., R.H.), Surgery (M.B.), Pathology (E.G.), and Biostatistics (J.S.), Johns
Hopkins University School of Medicine, 550 N Broadway, Suite 1103, Baltimore, MD
21205; Department of Medicine, the University of British Columbia, Vancouver, BC,
Canada (S.L.); Information Management Services, Rockville, Md (J.R., B.T.); Biometry
Research Group, National Cancer Institute, Bethesda, Md (P. Hu); Department of
Radiology, Nongken General Hospital of Hainan Medical University, Haikou, Hainan,
China (R.Y.); and Department of Thoracic Surgery, the Second Xiangya Hospital,
Central South University, Changsha, Hunan, China (C.C.)
| | - Amira Hussien
- From the Departments of Oncology (P. Huang, D.S.E.), Radiology (E.K.F.,
L.C.C., C.T.L., A.H.), Radiation Oncology and Molecular Radiation Sciences (S.P.,
J.L., R.H.), Surgery (M.B.), Pathology (E.G.), and Biostatistics (J.S.), Johns
Hopkins University School of Medicine, 550 N Broadway, Suite 1103, Baltimore, MD
21205; Department of Medicine, the University of British Columbia, Vancouver, BC,
Canada (S.L.); Information Management Services, Rockville, Md (J.R., B.T.); Biometry
Research Group, National Cancer Institute, Bethesda, Md (P. Hu); Department of
Radiology, Nongken General Hospital of Hainan Medical University, Haikou, Hainan,
China (R.Y.); and Department of Thoracic Surgery, the Second Xiangya Hospital,
Central South University, Changsha, Hunan, China (C.C.)
| | - Joshua Rathmell
- From the Departments of Oncology (P. Huang, D.S.E.), Radiology (E.K.F.,
L.C.C., C.T.L., A.H.), Radiation Oncology and Molecular Radiation Sciences (S.P.,
J.L., R.H.), Surgery (M.B.), Pathology (E.G.), and Biostatistics (J.S.), Johns
Hopkins University School of Medicine, 550 N Broadway, Suite 1103, Baltimore, MD
21205; Department of Medicine, the University of British Columbia, Vancouver, BC,
Canada (S.L.); Information Management Services, Rockville, Md (J.R., B.T.); Biometry
Research Group, National Cancer Institute, Bethesda, Md (P. Hu); Department of
Radiology, Nongken General Hospital of Hainan Medical University, Haikou, Hainan,
China (R.Y.); and Department of Thoracic Surgery, the Second Xiangya Hospital,
Central South University, Changsha, Hunan, China (C.C.)
| | - Brett Thomas
- From the Departments of Oncology (P. Huang, D.S.E.), Radiology (E.K.F.,
L.C.C., C.T.L., A.H.), Radiation Oncology and Molecular Radiation Sciences (S.P.,
J.L., R.H.), Surgery (M.B.), Pathology (E.G.), and Biostatistics (J.S.), Johns
Hopkins University School of Medicine, 550 N Broadway, Suite 1103, Baltimore, MD
21205; Department of Medicine, the University of British Columbia, Vancouver, BC,
Canada (S.L.); Information Management Services, Rockville, Md (J.R., B.T.); Biometry
Research Group, National Cancer Institute, Bethesda, Md (P. Hu); Department of
Radiology, Nongken General Hospital of Hainan Medical University, Haikou, Hainan,
China (R.Y.); and Department of Thoracic Surgery, the Second Xiangya Hospital,
Central South University, Changsha, Hunan, China (C.C.)
| | - Chen Chen
- From the Departments of Oncology (P. Huang, D.S.E.), Radiology (E.K.F.,
L.C.C., C.T.L., A.H.), Radiation Oncology and Molecular Radiation Sciences (S.P.,
J.L., R.H.), Surgery (M.B.), Pathology (E.G.), and Biostatistics (J.S.), Johns
Hopkins University School of Medicine, 550 N Broadway, Suite 1103, Baltimore, MD
21205; Department of Medicine, the University of British Columbia, Vancouver, BC,
Canada (S.L.); Information Management Services, Rockville, Md (J.R., B.T.); Biometry
Research Group, National Cancer Institute, Bethesda, Md (P. Hu); Department of
Radiology, Nongken General Hospital of Hainan Medical University, Haikou, Hainan,
China (R.Y.); and Department of Thoracic Surgery, the Second Xiangya Hospital,
Central South University, Changsha, Hunan, China (C.C.)
| | - Russell Hales
- From the Departments of Oncology (P. Huang, D.S.E.), Radiology (E.K.F.,
L.C.C., C.T.L., A.H.), Radiation Oncology and Molecular Radiation Sciences (S.P.,
J.L., R.H.), Surgery (M.B.), Pathology (E.G.), and Biostatistics (J.S.), Johns
Hopkins University School of Medicine, 550 N Broadway, Suite 1103, Baltimore, MD
21205; Department of Medicine, the University of British Columbia, Vancouver, BC,
Canada (S.L.); Information Management Services, Rockville, Md (J.R., B.T.); Biometry
Research Group, National Cancer Institute, Bethesda, Md (P. Hu); Department of
Radiology, Nongken General Hospital of Hainan Medical University, Haikou, Hainan,
China (R.Y.); and Department of Thoracic Surgery, the Second Xiangya Hospital,
Central South University, Changsha, Hunan, China (C.C.)
| | - David S. Ettinger
- From the Departments of Oncology (P. Huang, D.S.E.), Radiology (E.K.F.,
L.C.C., C.T.L., A.H.), Radiation Oncology and Molecular Radiation Sciences (S.P.,
J.L., R.H.), Surgery (M.B.), Pathology (E.G.), and Biostatistics (J.S.), Johns
Hopkins University School of Medicine, 550 N Broadway, Suite 1103, Baltimore, MD
21205; Department of Medicine, the University of British Columbia, Vancouver, BC,
Canada (S.L.); Information Management Services, Rockville, Md (J.R., B.T.); Biometry
Research Group, National Cancer Institute, Bethesda, Md (P. Hu); Department of
Radiology, Nongken General Hospital of Hainan Medical University, Haikou, Hainan,
China (R.Y.); and Department of Thoracic Surgery, the Second Xiangya Hospital,
Central South University, Changsha, Hunan, China (C.C.)
| | - Malcolm Brock
- From the Departments of Oncology (P. Huang, D.S.E.), Radiology (E.K.F.,
L.C.C., C.T.L., A.H.), Radiation Oncology and Molecular Radiation Sciences (S.P.,
J.L., R.H.), Surgery (M.B.), Pathology (E.G.), and Biostatistics (J.S.), Johns
Hopkins University School of Medicine, 550 N Broadway, Suite 1103, Baltimore, MD
21205; Department of Medicine, the University of British Columbia, Vancouver, BC,
Canada (S.L.); Information Management Services, Rockville, Md (J.R., B.T.); Biometry
Research Group, National Cancer Institute, Bethesda, Md (P. Hu); Department of
Radiology, Nongken General Hospital of Hainan Medical University, Haikou, Hainan,
China (R.Y.); and Department of Thoracic Surgery, the Second Xiangya Hospital,
Central South University, Changsha, Hunan, China (C.C.)
| | - Ping Hu
- From the Departments of Oncology (P. Huang, D.S.E.), Radiology (E.K.F.,
L.C.C., C.T.L., A.H.), Radiation Oncology and Molecular Radiation Sciences (S.P.,
J.L., R.H.), Surgery (M.B.), Pathology (E.G.), and Biostatistics (J.S.), Johns
Hopkins University School of Medicine, 550 N Broadway, Suite 1103, Baltimore, MD
21205; Department of Medicine, the University of British Columbia, Vancouver, BC,
Canada (S.L.); Information Management Services, Rockville, Md (J.R., B.T.); Biometry
Research Group, National Cancer Institute, Bethesda, Md (P. Hu); Department of
Radiology, Nongken General Hospital of Hainan Medical University, Haikou, Hainan,
China (R.Y.); and Department of Thoracic Surgery, the Second Xiangya Hospital,
Central South University, Changsha, Hunan, China (C.C.)
| | - Elliot K. Fishman
- From the Departments of Oncology (P. Huang, D.S.E.), Radiology (E.K.F.,
L.C.C., C.T.L., A.H.), Radiation Oncology and Molecular Radiation Sciences (S.P.,
J.L., R.H.), Surgery (M.B.), Pathology (E.G.), and Biostatistics (J.S.), Johns
Hopkins University School of Medicine, 550 N Broadway, Suite 1103, Baltimore, MD
21205; Department of Medicine, the University of British Columbia, Vancouver, BC,
Canada (S.L.); Information Management Services, Rockville, Md (J.R., B.T.); Biometry
Research Group, National Cancer Institute, Bethesda, Md (P. Hu); Department of
Radiology, Nongken General Hospital of Hainan Medical University, Haikou, Hainan,
China (R.Y.); and Department of Thoracic Surgery, the Second Xiangya Hospital,
Central South University, Changsha, Hunan, China (C.C.)
| | - Edward Gabrielson
- From the Departments of Oncology (P. Huang, D.S.E.), Radiology (E.K.F.,
L.C.C., C.T.L., A.H.), Radiation Oncology and Molecular Radiation Sciences (S.P.,
J.L., R.H.), Surgery (M.B.), Pathology (E.G.), and Biostatistics (J.S.), Johns
Hopkins University School of Medicine, 550 N Broadway, Suite 1103, Baltimore, MD
21205; Department of Medicine, the University of British Columbia, Vancouver, BC,
Canada (S.L.); Information Management Services, Rockville, Md (J.R., B.T.); Biometry
Research Group, National Cancer Institute, Bethesda, Md (P. Hu); Department of
Radiology, Nongken General Hospital of Hainan Medical University, Haikou, Hainan,
China (R.Y.); and Department of Thoracic Surgery, the Second Xiangya Hospital,
Central South University, Changsha, Hunan, China (C.C.)
| | - Stephen Lam
- From the Departments of Oncology (P. Huang, D.S.E.), Radiology (E.K.F.,
L.C.C., C.T.L., A.H.), Radiation Oncology and Molecular Radiation Sciences (S.P.,
J.L., R.H.), Surgery (M.B.), Pathology (E.G.), and Biostatistics (J.S.), Johns
Hopkins University School of Medicine, 550 N Broadway, Suite 1103, Baltimore, MD
21205; Department of Medicine, the University of British Columbia, Vancouver, BC,
Canada (S.L.); Information Management Services, Rockville, Md (J.R., B.T.); Biometry
Research Group, National Cancer Institute, Bethesda, Md (P. Hu); Department of
Radiology, Nongken General Hospital of Hainan Medical University, Haikou, Hainan,
China (R.Y.); and Department of Thoracic Surgery, the Second Xiangya Hospital,
Central South University, Changsha, Hunan, China (C.C.)
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