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Berger T, Alenfelder J, Steinmüller S, Heimann D, Gohain N, Petras D, Wang M, Berger R, Kostenis E, Reher R. A MassQL-Integrated Molecular Networking Approach for the Discovery and Substructure Annotation of Bioactive Cyclic Peptides. JOURNAL OF NATURAL PRODUCTS 2024; 87:692-704. [PMID: 38385767 DOI: 10.1021/acs.jnatprod.3c00750] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/23/2024]
Abstract
The marine sponge-derived fungus Stachylidium bicolor 293 K04 is a prolific producer of specialized metabolites, including certain cyclic tetrapeptides called endolides, which are characterized by the presence of the unusual amino acid N-methyl-3-(3-furyl)-alanine. This rare feature can be used as bait to detect new endolide-like analogs through customized fragment pattern searches of tandem mass spectrometry data using the Mass Spec Query Language (MassQL). Here, we integrate endolide-specific MassQL queries with molecular networking to obtain substructural information guiding the targeted isolation and structure elucidation of the new proline-containing endolides E (1) and F (2). We showed that endolide F (but not E) is a moderate antagonist of the arginine vasopressin V1A receptor, a member of the G protein-coupled receptor superfamily.
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Affiliation(s)
- Tim Berger
- Institute for Pharmaceutical Biology and Biotechnology, Department of Pharmacy, Philipps-University Marburg, Robert-Koch-Straße 4, 35037 Marburg, Germany
| | - Judith Alenfelder
- Section of Molecular, Cellular and Pharmacobiology, Institute of Pharmaceutical Biology, Nussallee 6, 53115 Bonn, Germany
| | - Sophie Steinmüller
- Section of Molecular, Cellular and Pharmacobiology, Institute of Pharmaceutical Biology, Nussallee 6, 53115 Bonn, Germany
| | - Dominik Heimann
- Department of Chemical Biology, Helmholtz Centre for Infection Research (HZI), Inhoffenstraße 7, 38124 Braunschweig, Germany
| | - Namrata Gohain
- Department of Chemistry, Philipps-University Marburg, Hans-Meerwein-Straße 4, 35032 Marburg, Germany
| | - Daniel Petras
- Interfaculty of Microbiology and Infection Medicine, University of Tübingen, 72076 Tübingen, Germany
| | - Mingxun Wang
- Department of Computer Science, University of California Riverside, Riverside, California 92507, United States
| | - Robert Berger
- Department of Chemistry, Philipps-University Marburg, Hans-Meerwein-Straße 4, 35032 Marburg, Germany
| | - Evi Kostenis
- Section of Molecular, Cellular and Pharmacobiology, Institute of Pharmaceutical Biology, Nussallee 6, 53115 Bonn, Germany
| | - Raphael Reher
- Institute for Pharmaceutical Biology and Biotechnology, Department of Pharmacy, Philipps-University Marburg, Robert-Koch-Straße 4, 35037 Marburg, Germany
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Liu Q, Liu L, Ratnayake R, Luesch H, Guo Y, Ye T. Nine‐Step
Total Synthesis and Biological Evaluation of Rhizonin A. CHINESE J CHEM 2020. [DOI: 10.1002/cjoc.202000222] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Qingchao Liu
- Department of Pharmaceutical Engineering, Northwest University 229 Taibai North Road Xi'an Shaanxi 710069 China
| | - Langlang Liu
- Department of Pharmaceutical Engineering, Northwest University 229 Taibai North Road Xi'an Shaanxi 710069 China
- Key Laboratory of Chemical Genomics, Peking University Shenzhen Graduate School Xili, Shenzhen Guangdong 518055 China
| | - Ranjala Ratnayake
- Department of Medicinal Chemistry and Center for Natural Products, Drug Discovery and Development (CNPD3), University of Florida Gainesville, Florida 32610 United States
| | - Hendrik Luesch
- Department of Medicinal Chemistry and Center for Natural Products, Drug Discovery and Development (CNPD3), University of Florida Gainesville, Florida 32610 United States
| | - Yian Guo
- Key Laboratory of Chemical Genomics, Peking University Shenzhen Graduate School Xili, Shenzhen Guangdong 518055 China
| | - Tao Ye
- Key Laboratory of Chemical Genomics, Peking University Shenzhen Graduate School Xili, Shenzhen Guangdong 518055 China
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