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Bader F, Tremblay JC, Paulus B. Theoretical modeling of molecules in weakly interacting environments: trifluoride anions in argon. Phys Chem Chem Phys 2022; 24:3555-3567. [PMID: 35080559 DOI: 10.1039/d1cp02338a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The properties of molecules can be affected by the presence of a host environment. Even in inert rare gas matrices such effects are observable, as for instance in matrix isolation spectroscopy. In this work we study the trifluoride anion in cryogenic argon environments. To investigate the structure and vibrational properties of the guest-host systems, a potential energy surface of compound F-3-argon structures is determined from ab initio calculations with the CCSD(T)-F12b approach. Argon environments are probed with minima hopping optimizations of extended trifluoride-argon clusters. The vibrations of F-3 within the optimized environments are examined with anharmonic vibrational analyses. Among the three identified structural surroundings for the trifluoride, two are characterized by relatively favorable guest-host and host-host interactions as well as vibrational zero-point energies. A striking dependence of the trifluoride properties on the particular argon environment reveals the delicate influence of the host atoms on the guest molecule. Very good agreement with measured data suggests that in experiment F-3 occupies a double-vacancy site.
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Affiliation(s)
- Frederik Bader
- Institut für Chemie und Biochemie, Freie Universität Berlin, D-14195, Berlin, Germany.
| | - Jean Christophe Tremblay
- Laboratoire de Physique et Chimie Théoriques, CNRS-Université de Lorraine, UMR 7019, ICPM, 1Bd Arago, 57070 Metz, France
| | - Beate Paulus
- Institut für Chemie und Biochemie, Freie Universität Berlin, D-14195, Berlin, Germany.
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Bader F, Tremblay JC, Paulus B. A pair potential modeling study of F3− in neon matrices. Phys Chem Chem Phys 2021; 23:886-899. [DOI: 10.1039/d0cp05031h] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
First-principles investigations of the trifluoride anion in a neon environment reveal a small blue-shift of the fundamental vibrational excitations.
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Affiliation(s)
- Frederik Bader
- Institut für Chemie und Biochemie
- Freie Universität Berlin
- D-14195, Berlin
- Germany
| | | | - Beate Paulus
- Institut für Chemie und Biochemie
- Freie Universität Berlin
- D-14195, Berlin
- Germany
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KARLSSON HANSO. LANCZOS ALGORITHMS AND CROSS CORRELATION FUNCTIONS Cif(E). JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY 2011. [DOI: 10.1142/s0219633603000719] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Cross correlation (CC) functions Cif(E) play an important role in chemical physics. They appear in the description of reactive scattering, photo-dissociation, photo-electron spectroscopy and electron transfer to mention a few. In this paper, we discuss two methods based on the Lanczos algorithm to compute the CC function for several initial and final states at the same time, without diagonalization. The property of the coupled two-term recursions variant of the Lanczos algorithm that yields a decomposition [Formula: see text] of the tridiagonal Lanczos matrix is crucial. The first method, the quasi minimal-recursive residue generation method (QM-RRGM) is based on solving a set of linear equations whereas the second method is based on a band-Lanczos method. The computational cost is of the same order of magnitude for both methods and is given by the number of matrix-vector multiplications in the underlying Lanczos method. Only a small set of scalars needs to be updated each recursion. The methods are compared for a model problem, the continuum resonance Raman cross section for a collinear model of CH2IBr . Both methods shows similar convergence properties. By adding a pre-conditioner, the rate of convergence can be increased dramatically.
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Affiliation(s)
- HANS O. KARLSSON
- Department of Quantum Chemistry, Uppsala University, Box 518, S-751 20 Uppsala, Sweden
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Chiang YW, Freed JH. A new Lanczos-based algorithm for simulating high-frequency two-dimensional electron spin resonance spectra. J Chem Phys 2011; 134:034112. [PMID: 21261335 DOI: 10.1063/1.3523576] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The Lanczos algorithm (LA) is a useful iterative method for the reduction of a large matrix to tridiagonal form. It is a storage efficient procedure requiring only the preceding two Lanczos vectors to compute the next. The quasi-minimal residual (QMR) method is a powerful method for the solution of linear equation systems, Ax = b. In this report we provide another application of the QMR method: we incorporate QMR into the LA to monitor the convergence of the Lanczos projections in the reduction of large sparse matrices. We demonstrate that the combined approach of the LA and QMR can be utilized efficiently for the orthogonal transformation of large, but sparse, complex, symmetric matrices, such as are encountered in the simulation of slow-motional 1D- and 2D-electron spin resonance (ESR) spectra. Especially in the 2D-ESR simulations, it is essential that we store all of the Lanczos vectors obtained in the course of the LA recursions and maintain their orthogonality. In the LA-QMR application, the QMR weight matrix mitigates the problem that the Lanczos vectors lose orthogonality after many LA projections. This enables substantially more Lanczos projections, as required to achieve convergence for the more challenging ESR simulations. It, therefore, provides better accuracy for the eigenvectors and the eigenvalues of the large sparse matrices originating in 2D-ESR simulations than does the previously employed method, which is a combined approach of the LA and the conjugate-gradient (CG) methods, as evidenced by the quality and convergence of the 2D-ESR simulations. Our results show that very slow-motional 2D-ESR spectra at W-band (95 GHz) can be reliably simulated using the LA-QMR method, whereas the LA-CG consistently fails. The improvements due to the LA-QMR are of critical importance in enabling the simulation of high-frequency 2D-ESR spectra, which are characterized by their very high resolution to molecular orientation.
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Affiliation(s)
- Yun-Wei Chiang
- Department of Chemistry, National Tsing Hua University, Hsinchu 30013, Taiwan.
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Füchsel G, Klamroth T, Tremblay JC, Saalfrank P. Stochastic approach to laser-induced ultrafast dynamics: the desorption of H(2)/D(2) from Ru(0001). Phys Chem Chem Phys 2010; 12:14082-94. [PMID: 20856974 DOI: 10.1039/c0cp00895h] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
The desorption of molecular hydrogen and deuterium induced by femtosecond-laser pulses is studied theoretically for the so-called DIMET (Desorption Induced by Multiple Electronic Transitions) process. These investigations are based on nonadiabatic classical Monte Carlo trajectory (CMCT) simulations on a ground and an excited state potential energy surface, including up to all six adsorbate degrees of freedom. The focus is on the hot-electron mediated energy transfer from the surface to the molecule and back, and the energy partitioning between the different degrees of freedom of the desorbing molecules. We first validate for a two-mode model comprising the desorption mode and the internal vibrational coordinate, the classical Monte Carlo trajectory method by comparing with Monte Carlo wavepacket (MCWP) calculations arising from a fully quantum mechanical open-system density matrix treatment. We then proceed by extending the CMCT calculations to include all six nuclear degrees of freedom of the desorbing molecule. This allows for a detailed comparison between theory and experiment concerning isotope effects, energy partitioning (translational, vibrational, and rotational energies and their distributions), and the dependence of these properties on the laser fluence. The most important findings are as follows. (i) CMCT agrees qualitative with the MCWP scheme. (ii) The basic experimental features such as the large isotope effect, the non-linear increase of yield with laser fluence, translationally hot products (in the order of several 1000 K) and non-equipartitioning of translational and internal energies (E(trans) > E(vib) > E(rot)) are well reproduced. (iii) Predictions concerning a strong angular dependence of translational energies at large observation angles are also made.
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Affiliation(s)
- Gernot Füchsel
- Institut für Chemie, Universität Potsdam, Karl-Liebknecht-Straße 24-25, D-14476 Potsdam-Golm, Germany
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Marquardt R, Cuvelier F, Olsen RA, Baerends EJ, Tremblay JC, Saalfrank P. A new analytical potential energy surface for the adsorption system CO/Cu(100). J Chem Phys 2010; 132:074108. [DOI: 10.1063/1.3308481] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Tremblay JC, Beyvers S, Saalfrank P. Selective excitation of coupled CO vibrations on a dissipative Cu(100) surface by shaped infrared laser pulses. J Chem Phys 2008; 128:194709. [DOI: 10.1063/1.2916710] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Karlsson HO. Reduced-Order Modeling, Error Estimation, and the Role of the Start-Vector: The Recursive Residue Generation Method Revisited. J Phys Chem A 2007; 111:10263-8. [PMID: 17663534 DOI: 10.1021/jp072647c] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The recursive residue generation method (RRGM) [Wyatt, R. E. Adv. Chem. Phys. 1989, 73, 231] is re-derived using the formalism of reduced-order modeling [Bai, Z. Appl. Numerical Math. 2002, 43, 9]. A stopping criteria for the RRGM recursions is proposed, on the basis of an expression for an upper bound to the absolute error [Bai, Z.; Ye, Q. Electron. Trans. Numerical Anal. 1998, 7, 1]. It is further pointed out that, in general, the start-vector has a negligible effect on the convergence of the RRGM.
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Affiliation(s)
- Hans O Karlsson
- Quantum Chemistry, Department of Physical and Analytical Chemistry, Uppsala University Box 518, SE-751 20 Uppsala, Sweden
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Recursive Solutions to Large Eigenproblems in Molecular Spectroscopy and Reaction Dynamics. REVIEWS IN COMPUTATIONAL CHEMISTRY 2007. [DOI: 10.1002/9780470189078.ch7] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/21/2023]
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Grozdanov TP, McCarroll R. Multichannel scattering calculations using absorbing potentials and mapped grids. J Chem Phys 2007; 126:034310. [PMID: 17249874 DOI: 10.1063/1.2430523] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The authors investigate the use of absorbing potentials and discrete variable representation grid methods in multichannel time-independent scattering calculations. An exactly solvable, coupled-two-channel problem involving square-well potentials is used to assess the quality of numerical results. Special emphasis is given to the description of scattering resonances and near-threshold regions. Numerical treatment of close vicinities of thresholds requires the introduction of nonequidistant grids through a mapping procedure of the scattering coordinate.
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Affiliation(s)
- T P Grozdanov
- Institute of Physics, P.O. Box 57, 11001 Belgrade, Serbia
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Tremblay JC, Carrington T. Calculating vibrational energies and wave functions of vinylidene using a contracted basis with a locally reorthogonalized coupled two-term Lanczos eigensolver. J Chem Phys 2006; 125:094311. [PMID: 16965084 DOI: 10.1063/1.2234480] [Citation(s) in RCA: 83] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We use a contracted basis+Lanczos eigensolver approach to compute vinylidene-like vibrational states of the acetylene-vinylidene system. To overcome problems caused by loss of orthogonality of the Lanczos vectors we reorthogonalize Lanczos vector and use a coupled two-term approach. The calculations are done in CC-HH diatom-diatom Jacobi coordinates which make it easy to compute states one irreducible representation at a time. The most costly parts of the calculation are parallelized and scale well. We estimate that the vinylidene energies we compute are converged to approximately 1 cm(-1).
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Affiliation(s)
- Jean Christophe Tremblay
- Département de chimie, Université de Montréal, C.P. 6128, succursale Centre-ville, Montréal (Québec) H3C 3J7, Canada.
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Tremblay JC, Carrington T. Computing resonance energies, widths, and wave functions using a Lanczos method in real arithmetic. J Chem Phys 2005; 122:244107. [PMID: 16035746 DOI: 10.1063/1.1942494] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023] Open
Abstract
We introduce new ideas for calculating resonance energies and widths. It is shown that a non-Hermitian-Lanczos approach can be used to compute eigenvalues of H+W, where H is the Hamiltonian and W is a complex absorbing potential (CAP), without evaluating complex matrix-vector products. This is done by exploiting the link between a CAP-modified Hamiltonian matrix and a real but nonsymmetric matrix U suggested by Mandelshtam and Neumaier [J. Theor. Comput. Chem. 1, 1 (2002)] and using a coupled-two-term Lanczos procedure. We use approximate resonance eigenvectors obtained from the non-Hermitian-Lanczos algorithm and a very good CAP to obtain very accurate energies and widths without solving eigenvalue problems for many values of the CAP strength parameter and searching for cusps. The method is applied to the resonances of HCO. We compare properties of the method with those of established approaches.
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Bouakline F, Grozdanov TP, Andric L, McCarroll R. Calculations of near-threshold cross sections for photodissociation of CH+ using the Lanczos algorithm. J Chem Phys 2005; 122:44108. [PMID: 15740236 DOI: 10.1063/1.1836760] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We combine the Lanczos algorithm with the absorbing-potential method, implemented in a discrete variable representation to calculate the near-threshold photodissociation cross sections of CH+. The method is iterative, based on a continued fraction representation of the Green function and avoids any explicit matrix diagonalization. A very good agreement is found with experiment and close-coupling calculations.
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Affiliation(s)
- F Bouakline
- Laboratoire de Chimie Physique-Matière et Rayonnement (UMR 7614 du CNRS), Université Pierre et Marie Curie, 75231-Paris Cedex 05, France
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Vijay A, Kouri DJ, Hoffman DK. Scattering and Bound States: A Lorentzian Function-Based Spectral Filter Approach. J Phys Chem A 2004. [DOI: 10.1021/jp040356n] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Amrendra Vijay
- Department of Chemistry, University of Houston, Houston, Texas 77204-5003
| | - Donald J. Kouri
- Departments of Chemistry, Mathematics, and Physics, University of Houston, Houston, Texas 77204-5003
| | - David K. Hoffman
- Department of Chemistry and Ames Laboratory, Iowa State University, Ames, Iowa 50011
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