1
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Lin P, Ji Y, He L, Ren X. Efficient Hybrid-Functional-Based Force and Stress Calculations for Periodic Systems with Thousands of Atoms. J Chem Theory Comput 2025; 21:3394-3409. [PMID: 40112335 DOI: 10.1021/acs.jctc.4c01635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/22/2025]
Abstract
We present an efficient linear-scaling algorithm for evaluating the analytical force and stress contributions derived from the exact-exchange energy, a key component in hybrid functional calculations. The algorithm, working equally well for molecular and periodic systems, is formulated within the framework of numerical atomic orbital (NAO) basis sets and takes advantage of the localized resolution-of-identity (LRI) technique for treating the two-electron Coulomb repulsion integrals. The linear-scaling behavior is realized by fully exploiting the sparsity of the expansion coefficients resulting from the strict locality of the NAOs and the LRI ansatz. Our implementation is massively parallel, and enables efficient structural relaxation based on hybrid density functionals for bulk materials containing thousands of atoms. In this work, we will present a detailed description of our algorithm and benchmark the performance of our implementation using illustrating examples. By optimizing the structures of the pristine and doped halide perovskite material CsSnI3 with different functionals, we find that in the presence of lattice strain, hybrid functionals provide a more accurate description of the stereochemical expression of the lone pair.
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Affiliation(s)
- Peize Lin
- Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China
- Songshan Lake Materials Laboratory, Dongguan, Guangdong 523808, China
- Institute of Artificial Intelligence, Hefei Comprehensive National Science Center, Hefei, Anhui 230026, China
| | - Yuyang Ji
- CAS Key Laboratory of Quantum Information, University of Science and Technology of China, Hefei 230026 Anhui, China
| | - Lixin He
- Institute of Artificial Intelligence, Hefei Comprehensive National Science Center, Hefei, Anhui 230026, China
- CAS Key Laboratory of Quantum Information, University of Science and Technology of China, Hefei 230026 Anhui, China
| | - Xinguo Ren
- Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China
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2
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Sharma M, Sierka M. Optical Gaps of Ionic Materials from GW/BSE-in-DFT and CC2-in-DFT. J Chem Theory Comput 2024; 20:9592-9605. [PMID: 39417709 PMCID: PMC11562370 DOI: 10.1021/acs.jctc.4c00819] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2024] [Revised: 10/07/2024] [Accepted: 10/07/2024] [Indexed: 10/19/2024]
Abstract
This work presents a density functional theory (DFT)-based embedding technique for the calculation of optical gaps in ionic solids. The approach partitions the supercell of the ionic solid and embeds a small molecule-like cluster in a periodic environment using a cluster-in-periodic embedding method. The environment is treated with DFT, and its influence on the cluster is captured by a DFT-based embedding potential. The optical gap is estimated as the lowest singlet excitation energy of the embedded cluster, obtained using a wave function theory method: second-order approximate coupled-cluster singles and doubles (CC2), and a many-body perturbation theory method: GW approximation combined with the Bethe-Salpeter equation (GW/BSE). The calculated excitation energies are benchmarked against the periodic GW/BSE values, equation-of-motion coupled-cluster singles and doubles (EOM-CCSD) results, and experiments. Both CC2-in-DFT and GW/BSE-in-DFT deliver excitation energies that are in good agreement with experimental values for several ionic solids (MgO, CaO, LiF, NaF, KF, and LiCl) while incurring negligible computational costs. Notably, GW/BSE-in-DFT exhibits remarkable accuracy with a mean absolute error (MAE) of just 0.38 eV with respect to experiments, demonstrating the effectiveness of the embedding strategy. In addition, the versatility of the method is highlighted by investigating the optical gap of a 2D MgCl2 system and the excitation energy of an oxygen vacancy in MgO, with results in good agreement with reported values.
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Affiliation(s)
| | - Marek Sierka
- Otto Schott Institute of
Materials Research, Friedrich Schiller Unversity
Jena, Löbdergraben 32, 07743 Jena, Germany
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3
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Li W, Wang Y, Ni Z, Li S. Cluster-in-Molecule Local Correlation Method for Dispersion Interactions in Large Systems and Periodic Systems. Acc Chem Res 2023; 56:3462-3474. [PMID: 37991873 DOI: 10.1021/acs.accounts.3c00538] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2023]
Abstract
ConspectusThe noncovalent interactions, including dispersion interactions, control the structures and stabilities of complex chemical systems, including host-guest complexes and the adsorption process of molecules on the solid surfaces. The density functional theory (DFT) with empirical dispersion correction is now the working horse in many areas of applications. Post-Hartree-Fock (post-HF) methods have been well recognized to provide more accurate descriptions in a systematic way. However, traditional post-HF methods are mainly limited to small- or medium-sized systems, and their applications to periodic condensed phase systems are still very limited due to their expensive computational costs.To extend post-HF calculations to large molecules, the cluster-in-molecule (CIM) local correlation approach has been established, allowing highly accurate electron correlation calculations that are routinely available for very large systems. In the CIM approach, the electron correlation energy of a large molecule could be obtained from electron correlation calculations on a series of clusters, each of which contains a subset of occupied and virtual localized molecular orbitals. The CIM method could be massively and efficiently parallelized on general computer clusters. The CIM method has been implemented at various electron correlation levels, including second-order Mo̷ller-Plesset perturbation theory (MP2), coupled cluster singles and doubles (CCSD), CCSD with perturbative triples correction [CCSD(T)], etc. The CIM-MP2 energy gradient algorithm was developed and applied to the geometry optimizations of large systems. The CIM method has also been extended to condensed-phase systems under periodic boundary conditions (PBC-CIM). For periodic systems, the correlation energy per unit cell could be evaluated with correlation energy contributions from a series of clusters that are built with localized Wannier functions.CIM-based electron correlation calculations have been employed to investigate a number of chemical problems in which the dispersion interaction is important. CIM-based post-HF methods including CIM domain-based local pair natural orbital (DLPNO) CCSD(T) are applied to compute the relative or binding energies of biological systems or supramolecular complexes, the reaction barrier in a relatively complex chemical reaction. The CIM-MP2 method is used to obtain the optimized geometry of large systems. CIM-based post-HF calculations have also been used to compute the cohesive energies of molecular crystals and adsorption energies of molecules on the solid surfaces. The CIM and its PBC variant are expected to become a powerful theoretical tool for accurate calculations of the energies and structures for a broad range of large systems and condensed-phase systems with significant dispersion interactions.
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Affiliation(s)
- Wei Li
- Key Laboratory of Mesoscopic Chemistry of Ministry of Education, New Cornerstone Science Laboratory, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, People's Republic of China
| | - Yuqi Wang
- Key Laboratory of Mesoscopic Chemistry of Ministry of Education, New Cornerstone Science Laboratory, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, People's Republic of China
| | - Zhigang Ni
- College of Material, Chemistry and Chemical Engineering, Hangzhou Normal University, Hangzhou 311121, People's Republic of China
| | - Shuhua Li
- Key Laboratory of Mesoscopic Chemistry of Ministry of Education, New Cornerstone Science Laboratory, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, People's Republic of China
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4
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Wang Y, Guo Y, Neese F, Valeev EF, Li W, Li S. Cluster-in-Molecule Approach with Explicitly Correlated Methods for Large Molecules. J Chem Theory Comput 2023; 19:8076-8089. [PMID: 37920973 DOI: 10.1021/acs.jctc.3c00627] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2023]
Abstract
In this article, we present a series of explicitly correlated local correlation methods developed under the cluster-in-molecule (CIM) framework, including explicitly correlated second-order Møller-Plesset perturbation (MP2), coupled-cluster singles and doubles (CCSD), domain-based local pair natural orbital CCSD (DLPNO-CCSD), and DLPNO-CCSD with perturbative triples (DLPNO-CCSD(T)). In these methods, F12 correction is decomposed into contributions from each occupied local molecular orbital and then evaluated independently in a given cluster, which consists of a subset of localized orbitals. These newly developed methods allow F12 calculations of large molecules (up to 145 atoms for quasi-one-dimensional systems) on a single node. We use these methods to investigate the relative stability between extended and folded alkane C30H62, the relative stability of four secondary structures of a polyglycine Ace(Gly)10NH2, and the binding energies of two host-guest complexes. The results demonstrate that the combination of CIM with F12 methods is a promising way to investigate large molecules with small basis set errors.
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Affiliation(s)
- Yuqi Wang
- School of Chemistry and Chemical Engineering, Key Laboratory of Mesoscopic Chemistry of MOE, New Cornerstone Science Laboratory, Institute of Theoretical and Computational Chemistry, Nanjing University, Nanjing 210023, P. R. China
| | - Yang Guo
- Qingdao Institute for Theoretical and Computational Sciences, Shandong University, Qingdao, Shandong 266237, P. R. China
| | - Frank Neese
- Max Planck Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, D-45470 Mülheim an der Ruhr, Germany
| | - Edward F Valeev
- Department of Chemistry, Virginia Tech, Blacksburg, Virginia 24061, United States
| | - Wei Li
- School of Chemistry and Chemical Engineering, Key Laboratory of Mesoscopic Chemistry of MOE, New Cornerstone Science Laboratory, Institute of Theoretical and Computational Chemistry, Nanjing University, Nanjing 210023, P. R. China
| | - Shuhua Li
- School of Chemistry and Chemical Engineering, Key Laboratory of Mesoscopic Chemistry of MOE, New Cornerstone Science Laboratory, Institute of Theoretical and Computational Chemistry, Nanjing University, Nanjing 210023, P. R. China
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5
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Wang Y, Ni Z, Neese F, Li W, Guo Y, Li S. Cluster-in-Molecule Method Combined with the Domain-Based Local Pair Natural Orbital Approach for Electron Correlation Calculations of Periodic Systems. J Chem Theory Comput 2022; 18:6510-6521. [PMID: 36240189 DOI: 10.1021/acs.jctc.2c00412] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The cluster-in-molecule (CIM) method was extended to systems with periodic boundary conditions (PBCs) in a previous work (PBC-CIM) [J. Chem. Theory Comput.2019, 15, 2933], which is able to compute the electronic structures of periodic systems at second-order Møller-Plesset perturbation theory (MP2) and coupled cluster singles and doubles (CCSD) levels. However, the high computational costs of CCSD with respect to the size of clusters limit the usage of PBC-CIM to crystals with small or medium unit cells. In this work, we further develop the PBC-CIM method by employing the domain-based local pair natural orbital (DLPNO) methods for the electron correlation calculations of clusters to reduce the computational costs. The combined approach allows CCSD with perturbative triples, denoted as CCSD(T), to be computationally available for accurate descriptions of periodic systems. The distant-pair correction is also implemented to improve the accuracy of PBC-CIM. As in the molecular cases, the distant pair correction significantly improves the accuracy of various PBC-CIM methods with few additional costs. The PBC-CIM-DLPNO-CCSD(T) approach has been applied to investigate the optimized lattice parameter of the cubic LiCl crystal and two adsorption problems (CO on the NaCl(100) surface and H2O on the h-BN surface). The results show that the CIM-DLPNO-CCSD(T) method offers accurate and efficient descriptions for the studied systems. Another application to the cohesive energy of the acetic acid crystal reveals that large basis sets are necessary for reliable calculations on the cohesive energies of molecular crystals.
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Affiliation(s)
- Yuqi Wang
- School of Chemistry and Chemical Engineering, Key Laboratory of Mesoscopic Chemistry of MOE, Institute of Theoretical and Computational Chemistry, Nanjing University, Nanjing210023, P. R. China
| | - Zhigang Ni
- College of Material, Chemistry and Chemical Engineering, Key Laboratory of Organosilicon Chemistry and Material Technology of Ministry of Education, Hangzhou Normal University, Hangzhou311121, P. R. China
| | - Frank Neese
- Max Planck Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, Mülheim an der RuhrD-45470, Germany
| | - Wei Li
- School of Chemistry and Chemical Engineering, Key Laboratory of Mesoscopic Chemistry of MOE, Institute of Theoretical and Computational Chemistry, Nanjing University, Nanjing210023, P. R. China
| | - Yang Guo
- Qingdao Institute for Theoretical and Computational Sciences, Shandong University, Qingdao, Shandong266237, P. R. China
| | - Shuhua Li
- School of Chemistry and Chemical Engineering, Key Laboratory of Mesoscopic Chemistry of MOE, Institute of Theoretical and Computational Chemistry, Nanjing University, Nanjing210023, P. R. China
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6
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Bintrim SJ, Berkelbach TC, Ye HZ. Integral-Direct Hartree-Fock and Møller-Plesset Perturbation Theory for Periodic Systems with Density Fitting: Application to the Benzene Crystal. J Chem Theory Comput 2022; 18:5374-5381. [PMID: 35969856 DOI: 10.1021/acs.jctc.2c00640] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We present an algorithm and implementation of integral-direct, density-fitted Hartree-Fock (HF) and second-order Møller-Plesset perturbation theory (MP2) for periodic systems. The new code eliminates the formerly prohibitive storage requirements and allows us to study systems 1 order of magnitude larger than before at the periodic MP2 level. We demonstrate the significance of the development by studying the benzene crystal in both the thermodynamic limit and the complete basis set limit, for which we predict an MP2 cohesive energy of -72.8 kJ/mol, which is about 10-15 kJ/mol larger in magnitude than all previously reported MP2 calculations. Compared to the best theoretical estimate from literature, several modified MP2 models approach chemical accuracy in the predicted cohesive energy of the benzene crystal and hence may be promising cost-effective choices for future applications on molecular crystals.
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Affiliation(s)
- Sylvia J Bintrim
- Department of Chemistry, Columbia University, New York, New York 10027, United States
| | - Timothy C Berkelbach
- Department of Chemistry, Columbia University, New York, New York 10027, United States.,Center for Computational Quantum Physics, Flatiron Institute, New York, New York 10010, United States
| | - Hong-Zhou Ye
- Department of Chemistry, Columbia University, New York, New York 10027, United States
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7
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Li W, Ma H, Li S, Ma J. Computational and data driven molecular material design assisted by low scaling quantum mechanics calculations and machine learning. Chem Sci 2021; 12:14987-15006. [PMID: 34909141 PMCID: PMC8612375 DOI: 10.1039/d1sc02574k] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2021] [Accepted: 10/12/2021] [Indexed: 12/11/2022] Open
Abstract
Electronic structure methods based on quantum mechanics (QM) are widely employed in the computational predictions of the molecular properties and optoelectronic properties of molecular materials. The computational costs of these QM methods, ranging from density functional theory (DFT) or time-dependent DFT (TDDFT) to wave-function theory (WFT), usually increase sharply with the system size, causing the curse of dimensionality and hindering the QM calculations for large sized systems such as long polymer oligomers and complex molecular aggregates. In such cases, in recent years low scaling QM methods and machine learning (ML) techniques have been adopted to reduce the computational costs and thus assist computational and data driven molecular material design. In this review, we illustrated low scaling ground-state and excited-state QM approaches and their applications to long oligomers, self-assembled supramolecular complexes, stimuli-responsive materials, mechanically interlocked molecules, and excited state processes in molecular aggregates. Variable electrostatic parameters were also introduced in the modified force fields with the polarization model. On the basis of QM computational or experimental datasets, several ML algorithms, including explainable models, deep learning, and on-line learning methods, have been employed to predict the molecular energies, forces, electronic structure properties, and optical or electrical properties of materials. It can be conceived that low scaling algorithms with periodic boundary conditions are expected to be further applicable to functional materials, perhaps in combination with machine learning to fast predict the lattice energy, crystal structures, and spectroscopic properties of periodic functional materials.
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Affiliation(s)
- Wei Li
- Key Laboratory of Mesoscopic Chemistry of Ministry of Education, Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Nanjing University Nanjing 210023 China
| | - Haibo Ma
- Key Laboratory of Mesoscopic Chemistry of Ministry of Education, Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Nanjing University Nanjing 210023 China
- Jiangsu Key Laboratory of Advanced Organic Materials, Jiangsu Key Laboratory of Vehicle Emissions Control, Nanjing University Nanjing 210023 China
| | - Shuhua Li
- Key Laboratory of Mesoscopic Chemistry of Ministry of Education, Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Nanjing University Nanjing 210023 China
| | - Jing Ma
- Key Laboratory of Mesoscopic Chemistry of Ministry of Education, Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Nanjing University Nanjing 210023 China
- Jiangsu Key Laboratory of Advanced Organic Materials, Jiangsu Key Laboratory of Vehicle Emissions Control, Nanjing University Nanjing 210023 China
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8
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Zhou Y, Gull E, Zgid D. Material-Specific Optimization of Gaussian Basis Sets against Plane Wave Data. J Chem Theory Comput 2021; 17:5611-5622. [PMID: 34448587 DOI: 10.1021/acs.jctc.1c00491] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Since in periodic systems, a given element may be present in different spatial arrangements displaying vastly different physical and chemical properties, an elemental basis set that is independent of physical properties of materials may lead to significant simulation inaccuracies. To avoid such a lack of material specificity within a given basis set, we present a material-specific Gaussian basis optimization scheme for solids, which simultaneously minimizes the total energy of the system and optimizes the band energies when compared to the reference plane wave calculation while taking care of the overlap matrix condition number. To assess this basis set optimization scheme, we compare the quality of the Gaussian basis sets generated for diamond, graphite, and silicon via our method against the existing basis sets. The optimization scheme of this work has also been tested on the existing Gaussian basis sets for periodic systems such as MoS2 and NiO, yielding improved results.
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Affiliation(s)
- Yanbing Zhou
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, United States
| | - Emanuel Gull
- Department of Physics, University of Michigan, Ann Arbor, Michigan 48109, United States
| | - Dominika Zgid
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, United States
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9
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Luo Z, Khaliullin RZ. Variable-Metric Localization of Occupied and Virtual Orbitals. J Chem Theory Comput 2021; 17:5568-5581. [PMID: 34370474 DOI: 10.1021/acs.jctc.1c00379] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The key idea of the variable-metric approach to orbital localization is to allow nonorthogonality between orbitals while, at the same time, preventing them from becoming linearly dependent. The variable-metric localization has been shown to improve the locality of occupied nonorthogonal orbitals relative to their orthogonal counterparts. In this work, numerous localization algorithms are designed and tested to exploit the conceptual simplicity of the variable-metric approach with the goal of creating a straightforward and reliable localization procedure for virtual orbitals. The implemented algorithms include the steepest descent, conjugate gradient (CG), limited-memory Broyden-Fletcher-Goldfarb-Shanno (L-BFGS), and hybrid procedures as well as trust-region (TR) methods based on the CG and Cauchy-point subproblem solvers. Comparative analysis shows that the CG-based TR algorithm is the best overall method to obtain nonorthogonal localized molecular orbitals (NLMOs), occupied or virtual. The L-BFGS and CG algorithms can also be used to obtain NLMOs reliably but often at higher computational cost. Extensive tests demonstrate that the implemented methods allow us to obtain well-localized Boys-Foster (i.e., maximally localized Wannier functions) and Pipek-Mezey, orthogonal and nonorthogonal, and occupied and virtual orbitals for a variety of gas-phase molecules and periodic materials. The tests also show that virtual NLMOs, which have not been described before, are, on average, 13% (Boys-Foster) and 18% (Pipek-Mezey) more localized than their orthogonal counterparts.
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Affiliation(s)
- Ziling Luo
- Department of Chemistry, McGill University, 801 Sherbrooke St. West, Montreal QC H3A 0B8, Canada
| | - Rustam Z Khaliullin
- Department of Chemistry, McGill University, 801 Sherbrooke St. West, Montreal QC H3A 0B8, Canada
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10
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Hansen AS, Aurbakken E, Pedersen TB. Smooth potential-energy surfaces in fragmentation-based local correlation methods for periodic systems. Mol Phys 2021. [DOI: 10.1080/00268976.2021.1896046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- A. S. Hansen
- Department of Chemistry, Hylleraas Centre for Quantum Molecular Sciences, University of Oslo, Oslo, Norway
| | - E. Aurbakken
- Department of Chemistry, Hylleraas Centre for Quantum Molecular Sciences, University of Oslo, Oslo, Norway
| | - T. B. Pedersen
- Department of Chemistry, Hylleraas Centre for Quantum Molecular Sciences, University of Oslo, Oslo, Norway
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11
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Lin P, Ren X, He L. Efficient Hybrid Density Functional Calculations for Large Periodic Systems Using Numerical Atomic Orbitals. J Chem Theory Comput 2021; 17:222-239. [PMID: 33307678 DOI: 10.1021/acs.jctc.0c00960] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We present an efficient, linear-scaling implementation for building the (screened) Hartree-Fock exchange (HFX) matrix for periodic systems within the framework of numerical atomic orbital (NAO) basis functions. Our implementation is based on the localized resolution of the identity approximation by which two-electron Coulomb repulsion integrals can be obtained by only computing two-center quantities-a feature that is highly beneficial to NAOs. By exploiting the locality of basis functions and efficient prescreening of the intermediate three- and two-index tensors, one can achieve a linear scaling of the computational cost for building the HFX matrix with respect to the system size. Our implementation is massively parallel, thanks to a MPI/OpenMP hybrid parallelization strategy for distributing the computational load and memory storage. All these factors add together to enable highly efficient hybrid functional calculations for large-scale periodic systems. In this work, we describe the key algorithms and implementation details for the HFX build as implemented in the ABACUS code package. The performance and scalability of our implementation with respect to the system size and the number of CPU cores are demonstrated for selected benchmark systems up to 4096 atoms.
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Affiliation(s)
- Peize Lin
- CAS Key Laboratory of Quantum Information, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Xinguo Ren
- Beijing National Laboratory for Condensed Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China
| | - Lixin He
- CAS Key Laboratory of Quantum Information, University of Science and Technology of China, Hefei, Anhui 230026, China
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12
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Shang H, Yang J. Implementation of Laplace Transformed MP2 for Periodic Systems With Numerical Atomic Orbitals. Front Chem 2020; 8:589992. [PMID: 33240850 PMCID: PMC7683768 DOI: 10.3389/fchem.2020.589992] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Accepted: 09/15/2020] [Indexed: 11/25/2022] Open
Abstract
We present an implementation of the canonical and Laplace-transformed formulation of the second-order Møller–Plesset perturbation theory under periodic boundary conditions using numerical atomic orbitals. To validate our approach, we show that our results of the Laplace-transformed MP2 correlation correction for the total energy and the band gap are in excellent agreement with the results of the canonical MP2 formulation. We have calculated the binding energy curve for the stacked trans-polyacetylene at the Hartree–Fock + MP2 level as a preliminary application.
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Affiliation(s)
- Honghui Shang
- State Key Laboratory of Computer Architecture, Institute of Computing Technology, Chinese Academy of Sciences, Beijing, China
| | - Jinlong Yang
- Hefei National Laboratory for Physical Sciences at Microscale, Department of Chemical Physics, Synergetic Innovation Center of Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, China
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13
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Benali A, Gasperich K, Jordan KD, Applencourt T, Luo Y, Bennett MC, Krogel JT, Shulenburger L, Kent PRC, Loos PF, Scemama A, Caffarel M. Toward a systematic improvement of the fixed-node approximation in diffusion Monte Carlo for solids—A case study in diamond. J Chem Phys 2020; 153:184111. [DOI: 10.1063/5.0021036] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Affiliation(s)
- Anouar Benali
- Computational Sciences Division, Argonne National Laboratory, Argonne, Illinois 60439, USA
| | - Kevin Gasperich
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
| | - Kenneth D. Jordan
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
| | - Thomas Applencourt
- Argonne Leadership Computing Facility, Argonne National Laboratory, Argonne, Illinois 60439, USA
| | - Ye Luo
- Computational Sciences Division, Argonne National Laboratory, Argonne, Illinois 60439, USA
| | - M. Chandler Bennett
- Materials Science and Technology Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - Jaron T. Krogel
- Materials Science and Technology Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - Luke Shulenburger
- HEDP Theory Department, Sandia National Laboratories, Albuquerque, New Mexico 87185, USA
| | - Paul R. C. Kent
- Center for Nanophase Materials Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
- Computational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - Pierre-François Loos
- Laboratoire de Chimie et Physique Quantiques, Université de Toulouse, CNRS, UPS, Toulouse, France
| | - Anthony Scemama
- Laboratoire de Chimie et Physique Quantiques, Université de Toulouse, CNRS, UPS, Toulouse, France
| | - Michel Caffarel
- Laboratoire de Chimie et Physique Quantiques, Université de Toulouse, CNRS, UPS, Toulouse, France
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14
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Bircher MP, Villard J, Rothlisberger U. Efficient Treatment of Correlation Energies at the Basis-Set Limit by Monte Carlo Summation of Continuum States. J Chem Theory Comput 2020; 16:6550-6559. [PMID: 32915565 PMCID: PMC7584365 DOI: 10.1021/acs.jctc.0c00724] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2020] [Indexed: 11/28/2022]
Abstract
The calculation of electron correlation is vital for the description of atomistic phenomena in physics, chemistry, and biology. However, accurate wavefunction-based methods exhibit steep scaling and often sluggish convergence with respect to the basis set at hand. Because of their delocalization and ease of extrapolation to the basis-set limit, plane waves would be ideally suited for the calculation of basis-set limit correlation energies. However, the routine use of correlated wavefunction approaches in a plane-wave basis set is hampered by prohibitive scaling due to a large number of virtual continuum states and has not been feasible for all but the smallest systems, even if substantial computational resources are available and methods with comparably beneficial scaling, such as the Møller-Plesset perturbation theory to second order (MP2), are used. Here, we introduce a stochastic sampling of the MP2 integrand based on Monte Carlo summation over continuum orbitals, which allows for speedups of up to a factor of 1000. Given a fixed number of sampling points, the resulting algorithm is dominated by a flat scaling of ∼ O ( N 2 ) . Absolute correlation energies are accurate to <0.1 kcal/mol with respect to conventional calculations for several hundreds of electrons. This allows for the calculation of unbiased basis-set limit correlation energies for systems containing hundreds of electrons with unprecedented efficiency gains based on a straightforward treatment of continuum contributions.
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Affiliation(s)
- Martin P. Bircher
- Computational
and Soft Matter Physics, Universität
Wien, Sensengasse 8/9, A-1090 Wien, Austria
| | - Justin Villard
- Laboratory
of Computational Chemistry and Biochemistry, Institut des Sciences
et Ingénierie Chimiques, Ecole Polytechnique
Fédérale de Lausanne (EPFL), Av. F.A. Forel 2, CH-1015 Lausanne, Switzerland
| | - Ursula Rothlisberger
- Laboratory
of Computational Chemistry and Biochemistry, Institut des Sciences
et Ingénierie Chimiques, Ecole Polytechnique
Fédérale de Lausanne (EPFL), Av. F.A. Forel 2, CH-1015 Lausanne, Switzerland
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15
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Wang X, Lewis CA, Valeev EF. Efficient evaluation of exact exchange for periodic systems via concentric atomic density fitting. J Chem Phys 2020; 153:124116. [DOI: 10.1063/5.0016856] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Xiao Wang
- Department of Chemistry, Virginia Tech, Blacksburg, Virginia 24061, USA
- Center for Computational Quantum Physics, Flatiron Institute, New York, New York 10010, USA
| | - Cannada A. Lewis
- Department of Chemistry, Virginia Tech, Blacksburg, Virginia 24061, USA
| | - Edward F. Valeev
- Department of Chemistry, Virginia Tech, Blacksburg, Virginia 24061, USA
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16
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Luo Z, Khaliullin RZ. Direct Unconstrained Variable-Metric Localization of One-Electron Orbitals. J Chem Theory Comput 2020; 16:3558-3566. [PMID: 32320232 DOI: 10.1021/acs.jctc.9b01286] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Spatially localized one-electron orbitals, orthogonal and non-orthogonal, are widely used in electronic structure theory to describe chemical bonding and speed up calculations. In order to avoid linear dependencies of localized orbitals, the existing localization methods either constrain orbital transformations to be unitary, that is, metric preserving, or, in the case of variable-metric methods, fix the centers of non-orthogonal localized orbitals. Here, we developed a different approach to orbital localization, in which these constraints are replaced with a single restriction that specifies the maximum allowed deviation from the orthogonality for the final set of localized orbitals. This reformulation, which can be viewed as a generalization of existing localization methods, enables one to choose the desired balance between the orthogonality and locality of the orbitals. Furthermore, the approach is conceptually and practically simple as it obviates the necessity in unitary transformations and allows one to determine optimal positions of the centers of non-orthogonal orbitals in an unconstrained and straightforward minimization procedure. It is demonstrated to produce well-localized orthogonal and non-orthogonal orbitals with the Berghold and Pipek--Mezey localization functions for a variety of molecules and periodic materials including large systems with nontrivial bonding.
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Affiliation(s)
- Ziling Luo
- Department of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, Quebec QC H3A 0B8, Canada
| | - Rustam Z Khaliullin
- Department of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, Quebec QC H3A 0B8, Canada
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17
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Lin P, Ren X, He L. Accuracy of Localized Resolution of the Identity in Periodic Hybrid Functional Calculations with Numerical Atomic Orbitals. J Phys Chem Lett 2020; 11:3082-3088. [PMID: 32223245 DOI: 10.1021/acs.jpclett.0c00481] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
We present an implementation of hybrid density functional approximations for periodic systems within a pseudopotential-based, numerical atomic orbital (NAO) framework. The two-electron Coulomb repulsion integrals (ERIs) are evaluated using the localized resolution-of-the-identity (LRI) approximation. The accuracy of the LRI approximation is benchmarked unambiguously against independent reference results obtained via a computational scheme whereby the ERIs are accurately evaluated by expanding the products of NAOs in terms of plane waves. An alternative strategy for constructing auxiliary basis sets is proposed, and its accuracy is assessed and compared to the previously used procedure. Finally, the reliability of our algorithm and implementation is benchmarked against other established implementations within different numerical frameworks in terms of the calculated band gap values of a set of semiconductors and insulators.
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Affiliation(s)
- Peize Lin
- CAS Key Laboratory of Quantum Information, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Xinguo Ren
- CAS Key Laboratory of Quantum Information, University of Science and Technology of China, Hefei, Anhui 230026, China
- Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China
| | - Lixin He
- CAS Key Laboratory of Quantum Information, University of Science and Technology of China, Hefei, Anhui 230026, China
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18
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Wang X, Berkelbach TC. Excitons in Solids from Periodic Equation-of-Motion Coupled-Cluster Theory. J Chem Theory Comput 2020; 16:3095-3103. [DOI: 10.1021/acs.jctc.0c00101] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Xiao Wang
- Center for Computational Quantum Physics, Flatiron Institute, New York, New York 10010, United States
| | - Timothy C. Berkelbach
- Center for Computational Quantum Physics, Flatiron Institute, New York, New York 10010, United States
- Department of Chemistry, Columbia University, New York, New York 10027, United States
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19
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Lewis AM, Berkelbach TC. Ab Initio Linear and Pump-Probe Spectroscopy of Excitons in Molecular Crystals. J Phys Chem Lett 2020; 11:2241-2246. [PMID: 32109074 DOI: 10.1021/acs.jpclett.0c00031] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Linear and nonlinear spectroscopies are powerful tools used to investigate the energetics and dynamics of electronic excited states of both molecules and crystals. While highly accurate ab initio calculations of molecular spectra can be performed relatively routinely, extending these calculations to periodic systems is challenging. Here, we present calculations of the linear absorption spectrum and pump-probe two-photon photoemission spectra of the naphthalene crystal using equation-of-motion coupled-cluster theory with single and double excitations (EOM-CCSD). Molecular acene crystals are of interest due to the low-energy multiexciton singlet states they exhibit, which have been studied extensively as intermediates involved in singlet fission. Our linear absorption spectrum is in good agreement with experiment, predicting a first exciton absorption peak at 4.4 eV, and our two-photon photoemission spectra capture the qualitative behavior of multiexciton states, whose double-excitation character cannot be captured by current methods. The simulated pump-probe spectra provide support for existing interpretations of two-photon photoemission experiments in closely related acene crystals such as tetracene and pentacene.
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Affiliation(s)
- Alan M Lewis
- Department of Chemistry and James Franck Institute, University of Chicago, Chicago, Illinois 60637, United States
| | - Timothy C Berkelbach
- Department of Chemistry, Columbia University, New York, New York 10027, United States
- Center for Computational Quantum Physics, Flatiron Institute, New York, New York 10010, United States
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20
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Hansen AS, Baardsen G, Rebolini E, Maschio L, Pedersen TB. Representation of the virtual space in extended systems – a correlation energy convergence study. Mol Phys 2020. [DOI: 10.1080/00268976.2020.1733118] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Affiliation(s)
- A. S. Hansen
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, University of Oslo, Oslo, Norway
| | - G. Baardsen
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, University of Oslo, Oslo, Norway
| | - E. Rebolini
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, University of Oslo, Oslo, Norway
- Institut Laue Langevin, Grenoble, France
| | - L. Maschio
- Dipartimento di Chimica, Universitá di Torino, Torino, Italy
| | - T. B. Pedersen
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, University of Oslo, Oslo, Norway
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21
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Maschio L, Kirtman B. Coupled Perturbation Theory Approach to Dual Basis Sets for Molecules and Solids. 1. General Theory and Application to Molecules. J Chem Theory Comput 2019; 16:340-353. [DOI: 10.1021/acs.jctc.9b00922] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Lorenzo Maschio
- Dipartimento di Chimica, Università di Torino, Via Giuria 5, 10125 Torino, Italy
| | - Bernard Kirtman
- Department of Chemistry and Biochemistry, University of California, Santa Barbara, California 93106, United States
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22
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Stoll H. Toward a wavefunction-based treatment of strong electron correlation in extended systems by means of incremental methods. J Chem Phys 2019; 151:044104. [DOI: 10.1063/1.5109860] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Hermann Stoll
- Institut für Theoretische Chemie, Universität Stuttgart, Pfaffenwaldring 55, 70550 Stuttgart, Germany
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23
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Mihm TN, McIsaac AR, Shepherd JJ. An optimized twist angle to find the twist-averaged correlation energy applied to the uniform electron gas. J Chem Phys 2019; 150:191101. [PMID: 31117769 DOI: 10.1063/1.5091445] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023] Open
Abstract
We explore an alternative to twist averaging in order to obtain more cost-effective and accurate extrapolations to the thermodynamic limit (TDL) for coupled cluster doubles (CCD) calculations. We seek a single twist angle to perform calculations at, instead of integrating over many random points or a grid. We introduce the concept of connectivity, a quantity derived from the nonzero four-index integrals in an MP2 calculation. This allows us to find a special twist angle that provides appropriate connectivity in the energy equation, which yields results comparable to full twist averaging. This special twist angle effectively makes the finite electron number CCD calculation represent the TDL more accurately, reducing the cost of twist-averaged CCD over Ns twist angles from Ns CCD calculations to Ns MP2 calculations plus one CCD calculation.
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Affiliation(s)
- Tina N Mihm
- Department of Chemistry, University of Iowa, Iowa City, Iowa 52242-1002, USA
| | - Alexandra R McIsaac
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - James J Shepherd
- Department of Chemistry, University of Iowa, Iowa City, Iowa 52242-1002, USA
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24
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Teuteberg TL, Eckhoff M, Mata RA. A full additive QM/MM scheme for the computation of molecular crystals with extension to many-body expansions. J Chem Phys 2019; 150:154118. [PMID: 31005074 DOI: 10.1063/1.5080427] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Abstract
An additive quantum mechanics/molecular mechanics (QM/MM) model for the theoretical investigation of molecular crystals (AC-QM/MM) is presented. At the one-body level, a single molecule is chosen as the QM region. The MM region around it consists of a finite cluster of explicit MM atoms, represented by point charges and Lennard-Jones potentials, with additional background charges to mimic periodic electrostatics. Cluster charges are QM-derived and calculated self-consistently to ensure a polarizable embedding. We have also considered the extension to many-body QM corrections, calculating the interactions of a central molecule to neighboring units in the crystal. Full gradient expressions have been derived, also including symmetry information. The scheme allows for the calculation of molecular properties as well as unconstrained optimizations of the molecular geometry and cell parameters with respect to the lattice energy. Benchmarking the approach with the X23 reference set confirms the convergence pattern of the many-body extension although a comparison to plane-wave density functional theory reveals a systematic overestimation of cohesive energies by 6-16 kJ mol-1. While the scheme primarily aims to provide an inexpensive and flexible way to model a molecule in a crystal environment, it can also be used to reach highly accurate cohesive energies by the straightforward application of wave function correlated approaches. Calculations with local coupled cluster with singles, doubles, and perturbative triples, albeit limited to numerical gradients, show an impressive agreement with experimental estimates for small molecular crystals.
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Affiliation(s)
- Thorsten L Teuteberg
- Institut für Physikalische Chemie, Universität Göttingen, Tammannstraße 6, Göttingen D-37077, Germany
| | - Marco Eckhoff
- Institut für Physikalische Chemie, Universität Göttingen, Tammannstraße 6, Göttingen D-37077, Germany
| | - Ricardo A Mata
- Institut für Physikalische Chemie, Universität Göttingen, Tammannstraße 6, Göttingen D-37077, Germany
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25
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Wang Y, Ni Z, Li W, Li S. Cluster-in-Molecule Local Correlation Approach for Periodic Systems. J Chem Theory Comput 2019; 15:2933-2943. [DOI: 10.1021/acs.jctc.8b01200] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Yuqi Wang
- School of Chemistry and Chemical Engineering, Key Laboratory of Mesoscopic Chemistry of MOE, Institute of Theoretical and Computational Chemistry, Nanjing University, Nanjing 210023, People’s Republic of China
| | - Zhigang Ni
- School of Chemistry and Chemical Engineering, Key Laboratory of Mesoscopic Chemistry of MOE, Institute of Theoretical and Computational Chemistry, Nanjing University, Nanjing 210023, People’s Republic of China
| | - Wei Li
- School of Chemistry and Chemical Engineering, Key Laboratory of Mesoscopic Chemistry of MOE, Institute of Theoretical and Computational Chemistry, Nanjing University, Nanjing 210023, People’s Republic of China
| | - Shuhua Li
- School of Chemistry and Chemical Engineering, Key Laboratory of Mesoscopic Chemistry of MOE, Institute of Theoretical and Computational Chemistry, Nanjing University, Nanjing 210023, People’s Republic of China
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26
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Brémond É, Savarese M, Pérez-Jiménez ÁJ, Sancho-García JC, Adamo C. Range-Separated Double-Hybrid Functional from Nonempirical Constraints. J Chem Theory Comput 2018; 14:4052-4062. [PMID: 29923721 DOI: 10.1021/acs.jctc.8b00261] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
On the basis of our previous developments in the field of nonempirical double hybrids, we present here a new exchange-correlation functional based on a range-separated model for the exchange part and integrating a nonlocal perturbative correction to the electron correlation contribution. Named RSX-QIDH, the functional is free from any kind of empirical parametrization. Its range-separation parameter is set to recover the total energy of the hydrogen atom, thus eliminating the self-interaction error for this one-electron system. Subsequent tests on some relevant benchmark data sets confirm that the self-interaction error is particularly low for RSX-QIDH. This new functional provides also correct dissociation profiles for charged rare-gas dimers and very accurate ionization potentials directly from Kohn-Sham orbital energies. Above all, these good results are not obtained at the expense of other properties. Indeed, further tests on standard benchmarks show that RSX-QIDH is competitive with the more empirical ωB97X-2 double hybrid and outperforms the parent LC-PBE long-range corrected hybrid, thus underlining the important role of the nonlocal perturbative correlation.
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Affiliation(s)
- Éric Brémond
- Université Paris Diderot, Sorbonne Paris Cité, ITODYS, UMR CNRS 7086, 15 rue J.-A. de Baïf , F-75013 Paris , France
| | - Marika Savarese
- CompuNet , Istituto Italiano di Tecnologia , via Morego 30 , I-16163 Genoa , Italy
| | | | | | - Carlo Adamo
- Chimie ParisTech, PSL Research University, CNRS, Institut de Recherche de Chimie Paris, 11, rue Pierre et Marie Curie , F-75005 Paris , France.,Institut Universitaire de France, 103 Boulevard Saint Michel , F-75005 Paris , France
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27
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Schäfer T, Ramberger B, Kresse G. Quartic scaling MP2 for solids: A highly parallelized algorithm in the plane wave basis. J Chem Phys 2018; 146:104101. [PMID: 28298118 DOI: 10.1063/1.4976937] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We present a low-complexity algorithm to calculate the correlation energy of periodic systems in second-order Møller-Plesset (MP2) perturbation theory. In contrast to previous approximation-free MP2 codes, our implementation possesses a quartic scaling, O(N4), with respect to the system size N and offers an almost ideal parallelization efficiency. The general issue that the correlation energy converges slowly with the number of basis functions is eased by an internal basis set extrapolation. The key concept to reduce the scaling is to eliminate all summations over virtual orbitals which can be elegantly achieved in the Laplace transformed MP2 formulation using plane wave basis sets and fast Fourier transforms. Analogously, this approach could allow us to calculate second order screened exchange as well as particle-hole ladder diagrams with a similar low complexity. Hence, the presented method can be considered as a step towards systematically improved correlation energies.
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Affiliation(s)
- Tobias Schäfer
- Faculty of Physics and Center for Computational Materials Science, University of Vienna, Sensengasse 8/12, A-1090 Vienna, Austria
| | - Benjamin Ramberger
- Faculty of Physics and Center for Computational Materials Science, University of Vienna, Sensengasse 8/12, A-1090 Vienna, Austria
| | - Georg Kresse
- Faculty of Physics and Center for Computational Materials Science, University of Vienna, Sensengasse 8/12, A-1090 Vienna, Austria
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28
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Rebolini E, Baardsen G, Hansen AS, Leikanger KR, Pedersen TB. Divide-Expand-Consolidate Second-Order Møller-Plesset Theory with Periodic Boundary Conditions. J Chem Theory Comput 2018; 14:2427-2438. [PMID: 29554431 DOI: 10.1021/acs.jctc.8b00021] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We present a generalization of the divide-expand-consolidate (DEC) framework for local coupled-cluster calculations to periodic systems and test it at the second-order Møller-Plesset (MP2) level of theory. For simple model systems with periodicity in one, two, and three dimensions, comparisons with extrapolated molecular calculations and the local MP2 implementation in the Cryscor program show that the correlation energy errors of the extended DEC (X-DEC) algorithm can be controlled through a single parameter, the fragment optimization threshold. Two computational bottlenecks are identified: the size of the virtual orbital spaces and the number of pair fragments required to achieve a given accuracy of the correlation energy. For the latter, we propose an affordable algorithm based on cubic splines interpolation of a limited number of pair-fragment interaction energies to determine a pair cutoff distance in accordance with the specified fragment optimization threshold.
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Affiliation(s)
- Elisa Rebolini
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry , University of Oslo , P.O. Box 1033 Blindern, N-0315 Oslo , Norway
| | - Gustav Baardsen
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry , University of Oslo , P.O. Box 1033 Blindern, N-0315 Oslo , Norway
| | - Audun Skau Hansen
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry , University of Oslo , P.O. Box 1033 Blindern, N-0315 Oslo , Norway
| | - Karl R Leikanger
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry , University of Oslo , P.O. Box 1033 Blindern, N-0315 Oslo , Norway
| | - Thomas Bondo Pedersen
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry , University of Oslo , P.O. Box 1033 Blindern, N-0315 Oslo , Norway
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29
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Schäfer T, Ramberger B, Kresse G. Laplace transformed MP2 for three dimensional periodic materials using stochastic orbitals in the plane wave basis and correlated sampling. J Chem Phys 2018; 148:064103. [PMID: 29448777 DOI: 10.1063/1.5016100] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
We present an implementation and analysis of a stochastic high performance algorithm to calculate the correlation energy of three-dimensional periodic systems in second-order Møller-Plesset perturbation theory (MP2). In particular we measure the scaling behavior of the sample variance and probe whether this stochastic approach is competitive if accuracies well below 1 meV per valence orbital are required, as it is necessary for calculations of adsorption, binding, or surface energies. The algorithm is based on the Laplace transformed MP2 (LTMP2) formulation in the plane wave basis. The time-dependent Hartree-Fock orbitals, appearing in the LTMP2 formulation, are stochastically rotated in the occupied and unoccupied Hilbert space. This avoids a full summation over all combinations of occupied and unoccupied orbitals, as inspired by the work of Neuhauser, Rabani, and Baer [J. Chem. Theory Comput. 9, 24 (2013)]. Additionally, correlated sampling is introduced, accelerating the statistical convergence significantly.
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Affiliation(s)
- Tobias Schäfer
- Faculty of Physics and Center for Computational Materials Science, University of Vienna, Sensengasse 8/12, A-1090 Vienna, Austria
| | - Benjamin Ramberger
- Faculty of Physics and Center for Computational Materials Science, University of Vienna, Sensengasse 8/12, A-1090 Vienna, Austria
| | - Georg Kresse
- Faculty of Physics and Center for Computational Materials Science, University of Vienna, Sensengasse 8/12, A-1090 Vienna, Austria
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30
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Usvyat D, Maschio L, Schütz M. Periodic and fragment models based on the local correlation approach. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2018. [DOI: 10.1002/wcms.1357] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Denis Usvyat
- Institut für ChemieHumboldt‐Universität zu BerlinBerlinGermany
| | - Lorenzo Maschio
- Dipartimento di Chimica and NIS (Nanostructured Interfaces and Surfaces) CentreUniversità di TorinoTorinoItaly
| | - Martin Schütz
- Institut für ChemieHumboldt‐Universität zu BerlinBerlinGermany
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31
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Golze D, Iannuzzi M, Hutter J. Local Fitting of the Kohn–Sham Density in a Gaussian and Plane Waves Scheme for Large-Scale Density Functional Theory Simulations. J Chem Theory Comput 2017; 13:2202-2214. [DOI: 10.1021/acs.jctc.7b00148] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Dorothea Golze
- Department
of Chemistry, University of Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
- COMP/Department
of Applied Physics, Aalto University, P.O. Box 11100, Aalto FI-00076, Finland
| | - Marcella Iannuzzi
- Department
of Chemistry, University of Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
| | - Jürg Hutter
- Department
of Chemistry, University of Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
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32
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McClain J, Sun Q, Chan GKL, Berkelbach TC. Gaussian-Based Coupled-Cluster Theory for the Ground-State and Band Structure of Solids. J Chem Theory Comput 2017; 13:1209-1218. [DOI: 10.1021/acs.jctc.7b00049] [Citation(s) in RCA: 130] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- James McClain
- Department
of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - Qiming Sun
- Division
of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States
| | - Garnet Kin-Lic Chan
- Division
of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States
| | - Timothy C. Berkelbach
- Department
of Chemistry and James Franck Institute, University of Chicago, Chicago, Illinois 60637, United States
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33
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Karttunen AJ, Usvyat D, Schütz M, Maschio L. Dispersion interactions in silicon allotropes. Phys Chem Chem Phys 2017; 19:7699-7707. [DOI: 10.1039/c6cp08873b] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Periodic local-MP2 and DFT-D3 calculations show that dispersion interactions in silicon allotropes can change the energy ordering significantly.
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Affiliation(s)
- Antti J. Karttunen
- Department of Chemistry and Materials Science
- Aalto University
- FI-00076 Aalto
- Finland
| | - Denis Usvyat
- Institut für Chemie
- Humboldt Universität zu Berlin
- D-12489 Berlin
- Germany
| | - Martin Schütz
- Institut für Chemie
- Humboldt Universität zu Berlin
- D-12489 Berlin
- Germany
| | - Lorenzo Maschio
- Dipartimento di Chimica, and NIS (Nanostructured Interfaces and Surfaces) centre
- Universitá di Torino
- Torino I-10125
- Italy
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34
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Masur O, Schütz M, Maschio L, Usvyat D. Fragment-Based Direct-Local-Ring-Coupled-Cluster Doubles Treatment Embedded in the Periodic Hartree–Fock Solution. J Chem Theory Comput 2016; 12:5145-5156. [DOI: 10.1021/acs.jctc.6b00651] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Oliver Masur
- Institut
für Physikalische und Theoretische Chemie, Universität Regensburg, 93049 Regensburg, Germany
| | - Martin Schütz
- Institut
für Physikalische und Theoretische Chemie, Universität Regensburg, 93049 Regensburg, Germany
| | - Lorenzo Maschio
- Dipartimento
di Chimica, and NIS (Nanostructured Interfaces and Surfaces) Centre, Università di Torino, via Giuria 5, I-10125 Torino, Italy
| | - Denis Usvyat
- Institut
für Physikalische und Theoretische Chemie, Universität Regensburg, 93049 Regensburg, Germany
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35
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Rybkin VV, VandeVondele J. Spin-Unrestricted Second-Order Møller–Plesset (MP2) Forces for the Condensed Phase: From Molecular Radicals to F-Centers in Solids. J Chem Theory Comput 2016; 12:2214-23. [DOI: 10.1021/acs.jctc.6b00015] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Vladimir V. Rybkin
- Nanoscale Simulations, Department
of Materials, ETH Zürich, Wolfgang-Pauli-Str. 27, CH-8093 Zürich, Switzerland
| | - Joost VandeVondele
- Nanoscale Simulations, Department
of Materials, ETH Zürich, Wolfgang-Pauli-Str. 27, CH-8093 Zürich, Switzerland
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36
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Pykal M, Jurečka P, Karlický F, Otyepka M. Modelling of graphene functionalization. Phys Chem Chem Phys 2016; 18:6351-72. [DOI: 10.1039/c5cp03599f] [Citation(s) in RCA: 168] [Impact Index Per Article: 18.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
This perspective describes the available theoretical methods and models for simulating graphene functionalization based on quantum and classical mechanics.
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Affiliation(s)
- Martin Pykal
- Regional Centre of Advanced Technologies and Materials
- Department of Physical Chemistry
- Faculty of Science
- Palacký University Olomouc
- 771 46 Olomouc
| | - Petr Jurečka
- Regional Centre of Advanced Technologies and Materials
- Department of Physical Chemistry
- Faculty of Science
- Palacký University Olomouc
- 771 46 Olomouc
| | - František Karlický
- Regional Centre of Advanced Technologies and Materials
- Department of Physical Chemistry
- Faculty of Science
- Palacký University Olomouc
- 771 46 Olomouc
| | - Michal Otyepka
- Regional Centre of Advanced Technologies and Materials
- Department of Physical Chemistry
- Faculty of Science
- Palacký University Olomouc
- 771 46 Olomouc
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37
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Del Ben M, Hutter J, VandeVondele J. Probing the structural and dynamical properties of liquid water with models including non-local electron correlation. J Chem Phys 2015; 143:054506. [PMID: 26254660 DOI: 10.1063/1.4927325] [Citation(s) in RCA: 84] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Water is a ubiquitous liquid that displays a wide range of anomalous properties and has a delicate structure that challenges experiment and simulation alike. The various intermolecular interactions that play an important role, such as repulsion, polarization, hydrogen bonding, and van der Waals interactions, are often difficult to reproduce faithfully in atomistic models. Here, electronic structure theories including all these interactions at equal footing, which requires the inclusion of non-local electron correlation, are used to describe structure and dynamics of bulk liquid water. Isobaric-isothermal (NpT) ensemble simulations based on the Random Phase Approximation (RPA) yield excellent density (0.994 g/ml) and fair radial distribution functions, while various other density functional approximations produce scattered results (0.8-1.2 g/ml). Molecular dynamics simulation in the microcanonical (NVE) ensemble based on Møller-Plesset perturbation theory (MP2) yields dynamical properties in the condensed phase, namely, the infrared spectrum and diffusion constant. At the MP2 and RPA levels of theory, ice is correctly predicted to float on water, resolving one of the anomalies as resulting from a delicate balance between van der Waals and hydrogen bonding interactions. For several properties, obtaining quantitative agreement with experiment requires correction for nuclear quantum effects (NQEs), highlighting their importance, for structure, dynamics, and electronic properties. A computed NQE shift of 0.6 eV for the band gap and absorption spectrum illustrates the latter. Giving access to both structure and dynamics of condensed phase systems, non-local electron correlation will increasingly be used to study systems where weak interactions are of paramount importance.
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Affiliation(s)
- Mauro Del Ben
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, CH-8057 Zurich, Switzerland
| | - Jürg Hutter
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, CH-8057 Zurich, Switzerland
| | - Joost VandeVondele
- Department of Materials, ETH Zurich, Wolfgang-Pauli-Strasse 27, CH-8093 Zurich, Switzerland
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38
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Chiappe G, Louis E, San-Fabián E, Vergés JA. Can model Hamiltonians describe the electron-electron interaction in π-conjugated systems? PAH and graphene. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2015; 27:463001. [PMID: 26501495 DOI: 10.1088/0953-8984/27/46/463001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Model Hamiltonians have been, and still are, a valuable tool for investigating the electronic structure of systems for which mean field theories work poorly. This review will concentrate on the application of Pariser-Parr-Pople (PPP) and Hubbard Hamiltonians to investigate some relevant properties of polycyclic aromatic hydrocarbons (PAH) and graphene. When presenting these two Hamiltonians we will resort to second quantisation which, although not the way chosen in its original proposal of the former, is much clearer. We will not attempt to be comprehensive, but rather our objective will be to try to provide the reader with information on what kinds of problems they will encounter and what tools they will need to solve them. One of the key issues concerning model Hamiltonians that will be treated in detail is the choice of model parameters. Although model Hamiltonians reduce the complexity of the original Hamiltonian, they cannot be solved in most cases exactly. So, we shall first consider the Hartree-Fock approximation, still the only tool for handling large systems, besides density functional theory (DFT) approaches. We proceed by discussing to what extent one may exactly solve model Hamiltonians and the Lanczos approach. We shall describe the configuration interaction (CI) method, a common technology in quantum chemistry but one rarely used to solve model Hamiltonians. In particular, we propose a variant of the Lanczos method, inspired by CI, that has the novelty of using as the seed of the Lanczos process a mean field (Hartree-Fock) determinant (the method will be named LCI). Two questions of interest related to model Hamiltonians will be discussed: (i) when including long-range interactions, how crucial is including in the Hamiltonian the electronic charge that compensates ion charges? (ii) Is it possible to reduce a Hamiltonian incorporating Coulomb interactions (PPP) to an 'effective' Hamiltonian including only on-site interactions (Hubbard)? The performance of CI will be checked on small molecules. The electronic structure of azulene and fused azulene will be used to illustrate several aspects of the method. As regards graphene, several questions will be considered: (i) paramagnetic versus antiferromagnetic solutions, (ii) forbidden gap versus dot size, (iii) graphene nano-ribbons, and (iv) optical properties.
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Affiliation(s)
- G Chiappe
- Unidad Asociada del CSIC and Instituto Universitario de Materiales, Universidad de Alicante, San Vicente del Raspeig, 03690 Alicante, Spain. Departamento de Física Aplicada, Universidad de Alicante, San Vicente del Raspeig, 03690 Alicante, Spain
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39
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Krisiloff DB, Krauter CM, Ricci FJ, Carter EA. Density Fitting and Cholesky Decomposition of the Two-Electron Integrals in Local Multireference Configuration Interaction Theory. J Chem Theory Comput 2015; 11:5242-51. [DOI: 10.1021/acs.jctc.5b00762] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- David B. Krisiloff
- Departments of †Chemistry and ‡Mechanical and
Aerospace Engineering, ∥Program in Applied
and Computational Mathematics, and ¶Andlinger Center for Energy and the Environment, Princeton University, Princeton, New Jersey 08544, United States
| | - Caroline M. Krauter
- Departments of †Chemistry and ‡Mechanical and
Aerospace Engineering, ∥Program in Applied
and Computational Mathematics, and ¶Andlinger Center for Energy and the Environment, Princeton University, Princeton, New Jersey 08544, United States
| | - Francis J. Ricci
- Departments of †Chemistry and ‡Mechanical and
Aerospace Engineering, ∥Program in Applied
and Computational Mathematics, and ¶Andlinger Center for Energy and the Environment, Princeton University, Princeton, New Jersey 08544, United States
| | - Emily A. Carter
- Departments of †Chemistry and ‡Mechanical and
Aerospace Engineering, ∥Program in Applied
and Computational Mathematics, and ¶Andlinger Center for Energy and the Environment, Princeton University, Princeton, New Jersey 08544, United States
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40
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Sansone G, Civalleri B, Usvyat D, Toulouse J, Sharkas K, Maschio L. Range-separated double-hybrid density-functional theory applied to periodic systems. J Chem Phys 2015; 143:102811. [PMID: 26374004 DOI: 10.1063/1.4922996] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Quantum chemistry methods exploiting density-functional approximations for short-range electron-electron interactions and second-order Møller-Plesset (MP2) perturbation theory for long-range electron-electron interactions have been implemented for periodic systems using Gaussian-type basis functions and the local correlation framework. The performance of these range-separated double hybrids has been benchmarked on a significant set of systems including rare-gas, molecular, ionic, and covalent crystals. The use of spin-component-scaled MP2 for the long-range part has been tested as well. The results show that the value of μ = 0.5 bohr(-1) for the range-separation parameter usually used for molecular systems is also a reasonable choice for solids. Overall, these range-separated double hybrids provide a good accuracy for binding energies using basis sets of moderate sizes such as cc-pVDZ and aug-cc-pVDZ.
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Affiliation(s)
- Giuseppe Sansone
- Dipartimento di Chimica and NIS (Nanostructured Interfaces and Surfaces) Centre, Università di Torino, via Giuria 5, I-10125 Torino, Italy
| | - Bartolomeo Civalleri
- Dipartimento di Chimica and NIS (Nanostructured Interfaces and Surfaces) Centre, Università di Torino, via Giuria 5, I-10125 Torino, Italy
| | - Denis Usvyat
- Institute for Physical and Theoretical Chemistry, Universität Regensburg, Universitätsstrasse 31, D-93040 Regensburg, Germany
| | - Julien Toulouse
- Sorbonne Universités, UPMC Univ. Paris 06, UMR 7616, Laboratoire de Chimie Théorique, F-75005 Paris, France
| | - Kamal Sharkas
- Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260-3000, USA
| | - Lorenzo Maschio
- Dipartimento di Chimica and NIS (Nanostructured Interfaces and Surfaces) Centre, Università di Torino, via Giuria 5, I-10125 Torino, Italy
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41
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Del Ben M, Hutter J, VandeVondele J. Forces and stress in second order Møller-Plesset perturbation theory for condensed phase systems within the resolution-of-identity Gaussian and plane waves approach. J Chem Phys 2015; 143:102803. [DOI: 10.1063/1.4919238] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Mauro Del Ben
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
| | - Jürg Hutter
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
| | - Joost VandeVondele
- Department of Materials, ETH Zürich, Wolfgang-Pauli-Strasse 27, CH-8093 Zürich, Switzerland
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42
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Usvyat D, Maschio L, Schütz M. Periodic local MP2 method employing orbital specific virtuals. J Chem Phys 2015; 143:102805. [DOI: 10.1063/1.4921301] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Denis Usvyat
- Institute for Physical and Theoretical Chemistry, Universität Regensburg, Universitätsstraße 31, D-93040 Regensburg, Germany
| | - Lorenzo Maschio
- Dipartimento di Chimica, and Centre of Excellence NIS (Nanostructured Interfaces and Surfaces), Università di Torino, via Giuria 5, I-10125 Torino, Italy
| | - Martin Schütz
- Institute for Physical and Theoretical Chemistry, Universität Regensburg, Universitätsstraße 31, D-93040 Regensburg, Germany
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43
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Hollett JW. Non-pairwise additivity of the leading-order dispersion energy. J Chem Phys 2015; 142:084105. [PMID: 25725710 DOI: 10.1063/1.4908134] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
The leading-order (i.e., dipole-dipole) dispersion energy is calculated for one-dimensional (1D) and two-dimensional (2D) infinite lattices, and an infinite 1D array of infinitely long lines, of doubly occupied locally harmonic wells. The dispersion energy is decomposed into pairwise and non-pairwise additive components. By varying the force constant and separation of the wells, the non-pairwise additive contribution to the dispersion energy is shown to depend on the overlap of density between neighboring wells. As well separation is increased, the non-pairwise additivity of the dispersion energy decays. The different rates of decay for 1D and 2D lattices of wells is explained in terms of a Jacobian effect that influences the number of nearest neighbors. For an array of infinitely long lines of wells spaced 5 bohrs apart, and an inter-well spacing of 3 bohrs within a line, the non-pairwise additive component of the leading-order dispersion energy is -0.11 kJ mol(-1) well(-1), which is 7% of the total. The polarizability of the wells and the density overlap between them are small in comparison to that of the atomic densities that arise from the molecular density partitioning used in post-density-functional theory (DFT) damped dispersion corrections, or DFT-D methods. Therefore, the nonadditivity of the leading-order dispersion observed here is a conservative estimate of that in molecular clusters.
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Affiliation(s)
- Joshua W Hollett
- Department of Chemistry, University of Winnipeg, Winnipeg, Manitoba R3B 2G3, Canada and Department of Chemistry, University of Manitoba, Winnipeg, Manitoba R3T 2N2, Canada
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44
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Hammerschmidt L, Maschio L, Müller C, Paulus B. Electron Correlation at the MgF2(110) Surface: A Comparison of Incremental and Local Correlation Methods. J Chem Theory Comput 2014; 11:252-9. [DOI: 10.1021/ct500841b] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Lukas Hammerschmidt
- Freie Universität Berlin, Institut für
Chemie und Biochemie, Takustr. 3, 14195 Berlin, Germany
| | - Lorenzo Maschio
- Università di Torino, Dipartimento di Chimica, Via P. Giuria 5, 10125 Torino, Italy
| | - Carsten Müller
- Freie Universität Berlin, Institut für
Chemie und Biochemie, Takustr. 3, 14195 Berlin, Germany
| | - Beate Paulus
- Freie Universität Berlin, Institut für
Chemie und Biochemie, Takustr. 3, 14195 Berlin, Germany
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45
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Hirata S, Gilliard K, He X, Li J, Sode O. Ab initio molecular crystal structures, spectra, and phase diagrams. Acc Chem Res 2014; 47:2721-30. [PMID: 24754304 DOI: 10.1021/ar500041m] [Citation(s) in RCA: 61] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Conspectus Molecular crystals are chemists' solids in the sense that their structures and properties can be understood in terms of those of the constituent molecules merely perturbed by a crystalline environment. They form a large and important class of solids including ices of atmospheric species, drugs, explosives, and even some organic optoelectronic materials and supramolecular assemblies. Recently, surprisingly simple yet extremely efficient, versatile, easily implemented, and systematically accurate electronic structure methods for molecular crystals have been developed. The methods, collectively referred to as the embedded-fragment scheme, divide a crystal into monomers and overlapping dimers and apply modern molecular electronic structure methods and software to these fragments of the crystal that are embedded in a self-consistently determined crystalline electrostatic field. They enable facile applications of accurate but otherwise prohibitively expensive ab initio molecular orbital theories such as Møller-Plesset perturbation and coupled-cluster theories to a broad range of properties of solids such as internal energies, enthalpies, structures, equation of state, phonon dispersion curves and density of states, infrared and Raman spectra (including band intensities and sometimes anharmonic effects), inelastic neutron scattering spectra, heat capacities, Gibbs energies, and phase diagrams, while accounting for many-body electrostatic (namely, induction or polarization) effects as well as two-body exchange and dispersion interactions from first principles. They can fundamentally alter the role of computing in the studies of molecular crystals in the same way ab initio molecular orbital theories have transformed research practices in gas-phase physical chemistry and synthetic chemistry in the last half century. In this Account, after a brief summary of formalisms and algorithms, we discuss applications of these methods performed in our group as compelling illustrations of their unprecedented power in addressing some of the outstanding problems of solid-state chemistry, high-pressure chemistry, or geochemistry. They are the structure and spectra of ice Ih, in particular, the origin of two peaks in the hydrogen-bond-stretching region of its inelastic neutron scattering spectra, a solid-solid phase transition from CO2-I to elusive, metastable CO2-III, pressure tuning of Fermi resonance in solid CO2, and the structure and spectra of solid formic acid, all at the level of second-order Møller-Plesset perturbation theory or higher.
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Affiliation(s)
- So Hirata
- Department of Chemistry, University of Illinois at Urbana−Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801, United States
| | - Kandis Gilliard
- Department of Chemistry, University of Illinois at Urbana−Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801, United States
| | - Xiao He
- Department of Chemistry, University of Illinois at Urbana−Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801, United States
| | - Jinjin Li
- Department of Chemistry, University of Illinois at Urbana−Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801, United States
| | - Olaseni Sode
- Department of Chemistry, University of Illinois at Urbana−Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801, United States
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46
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Libisch F, Huang C, Carter EA. Embedded correlated wavefunction schemes: theory and applications. Acc Chem Res 2014; 47:2768-75. [PMID: 24873211 DOI: 10.1021/ar500086h] [Citation(s) in RCA: 149] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Conspectus Ab initio modeling of matter has become a pillar of chemical research: with ever-increasing computational power, simulations can be used to accurately predict, for example, chemical reaction rates, electronic and mechanical properties of materials, and dynamical properties of liquids. Many competing quantum mechanical methods have been developed over the years that vary in computational cost, accuracy, and scalability: density functional theory (DFT), the workhorse of solid-state electronic structure calculations, features a good compromise between accuracy and speed. However, approximate exchange-correlation functionals limit DFT's ability to treat certain phenomena or states of matter, such as charge-transfer processes or strongly correlated materials. Furthermore, conventional DFT is purely a ground-state theory: electronic excitations are beyond its scope. Excitations in molecules are routinely calculated using time-dependent DFT linear response; however applications to condensed matter are still limited. By contrast, many-electron wavefunction methods aim for a very accurate treatment of electronic exchange and correlation. Unfortunately, the associated computational cost renders treatment of more than a handful of heavy atoms challenging. On the other side of the accuracy spectrum, parametrized approaches like tight-binding can treat millions of atoms. In view of the different (dis-)advantages of each method, the simulation of complex systems seems to force a compromise: one is limited to the most accurate method that can still handle the problem size. For many interesting problems, however, compromise proves insufficient. A possible solution is to break up the system into manageable subsystems that may be treated by different computational methods. The interaction between subsystems may be handled by an embedding formalism. In this Account, we review embedded correlated wavefunction (CW) approaches and some applications. We first discuss our density functional embedding theory, which is formally exact. We show how to determine the embedding potential, which replaces the interaction between subsystems, at the DFT level. CW calculations are performed using a fixed embedding potential, that is, a non-self-consistent embedding scheme. We demonstrate this embedding theory for two challenging electron transfer phenomena: (1) initial oxidation of an aluminum surface and (2) hot-electron-mediated dissociation of hydrogen molecules on a gold surface. In both cases, the interaction between gas molecules and metal surfaces were treated by sophisticated CW techniques, with the remainder of the extended metal surface being treated by DFT. Our embedding approach overcomes the limitations of conventional Kohn-Sham DFT in describing charge transfer, multiconfigurational character, and excited states. From these embedding simulations, we gained important insights into fundamental processes that are crucial aspects of fuel cell catalysis (i.e., O2 reduction at metal surfaces) and plasmon-mediated photocatalysis by metal nanoparticles. Moreover, our findings agree very well with experimental observations, while offering new views into the chemistry. We finally discuss our recently formulated potential-functional embedding theory that provides a seamless, first-principles way to include back-action onto the environment from the embedded region.
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Affiliation(s)
- Florian Libisch
- Institute
for Theoretical Physics, Vienna University of Technology, 1040 Vienna, Austria
| | - Chen Huang
- Theoretical
Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Emily A. Carter
- Department
of Mechanical and Aerospace Engineering, Program in Applied and Computational
Mathematics, and Andlinger Center for Energy and the Environment, Princeton University, Princeton, New Jersey 08544, United States
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47
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Sharkas K, Toulouse J, Maschio L, Civalleri B. Double-hybrid density-functional theory applied to molecular crystals. J Chem Phys 2014; 141:044105. [DOI: 10.1063/1.4890439] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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48
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Voloshina E, Paulus B. First Multireference Correlation Treatment of Bulk Metals. J Chem Theory Comput 2014; 10:1698-706. [DOI: 10.1021/ct401040t] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Elena Voloshina
- Humboldt-Universität zu Berlin, Institut für Chemie, 10099 Berlin, Germany
| | - Beate Paulus
- Freie Universität Berlin, Institut für
Chemie und Biochemie, 14195 Berlin, Germany
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49
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Rimola A, Costa D, Sodupe M, Lambert JF, Ugliengo P. Silica surface features and their role in the adsorption of biomolecules: computational modeling and experiments. Chem Rev 2013; 113:4216-313. [PMID: 23289428 DOI: 10.1021/cr3003054] [Citation(s) in RCA: 346] [Impact Index Per Article: 28.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Albert Rimola
- Departament de Química, Universitat Autònoma de Barcelona, 08193 Bellaterra (Cerdanyola del Vallès), Spain
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50
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Usvyat D. Linear-scaling explicitly correlated treatment of solids: Periodic local MP2-F12 method. J Chem Phys 2013; 139:194101. [DOI: 10.1063/1.4829898] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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