The molecular symmetry and electronic spectroscopy of 7-azaindole dimer: Its proton-transfer channels

Halogen substituent effect on the water-assisted excited-state tautomerization of 2, 7-diazaindole-H2O complex in aqueous solution: A theoretical study

We studied the ESPT process in the 2-DAI-H₂O complex theoretically for the first time, and compared the kinetics of 2-DAI-H₂O with those features of 7-DAI-H₂O. The substituted effect on the dynamics of excited-state double proton transfer in 2-DAI-H₂O and 7-DAI-H₂O clusters in water were also investigated at the TD-M06-2X/6-311+G(d, p) level. In this work, 2,7-DAI-H₂O is also expressed as 2-DAI-H₂O and 7-DAI-H₂O, in which correspond to different ESPT reactions and generate two tautomers (N₂H form and N₇H form). In both the 2-DAI-H₂O and 7-DAI-H₂O complexes, ESPT processes happened in a concertedly but asynchronously protolysis pathway. The ESPT process preferred to occur in the 7-DAI-H₂O complex due to its lower barrier height. For the 3-X-2-DAI-H₂O and 3-X-7-DAI-H₂O (X = H, F, Cl, Br) complexes, the replacement of halogen atom did not influence the ESPT mechanism. However, the replacement of halogen atom changed the structural parameters evidently, reduced the barrier height up to 4-5 kcal/mol, and enlarged the asynchronicity of ESPT apparently. ∆(R₁+R₂) values in the 3X-2-DAI-H₂O and 3X-7-DAI-H₂O complexes have linear correlation to the ZPE-corrected ESPT barrier height linearly.

Effect of different alkyl groups on excited-state tautomerization of 7AI-azaindole-H2O: A theoretical study

The effect of substituted alkyl groups at different substituted position on the first excited-state proton transfer of nR7AI-H₂O (n = 2-6; R = CH₃, C₂H₅, CF₃) complexes were theoretically investigated at the TD-M06-2X/6-31 + G(d, p) level. Here n value denoted the substituted position C_n of R group. The replacement of alkyl R group had no effect on the features of HOMO and LUMO, but influenced the S₀ → S₁ adiabatic transition energies of the nR7AI-H₂O complex. Through computation, we found that the double proton transfer took place in a concerted but asynchronous protolysis pattern regardless of substituted group R and substituted position in the nR7AI-H₂O complex. The vibrational-mode specific nature of ESPT was verified. The alkyl group R changed the geometrical parameters of TS, and resulted in enlarging/narrowing the asynchronousity of ESPT. The ESPT barrier height was also affected by the substituted group and position.

A theoretical study of the potential energy surfaces for the double proton transfer reaction of model DNA base pairs

The excited-state double proton transfer (ESDPT) mechanism in a model DNA base pair, 7-azaindole (7AI) dimer, has been debated over the years.

Solvent effects on the excited-state double proton transfer mechanism in the 7-azaindole dimer: a TDDFT study with the polarizable continuum model

Solvent effects on the excited-state double proton transfer (ESDPT) mechanism in the 7-azaindole (7AI) dimer were investigated using the time-dependent density functional theory (TDDFT) method.

Double proton transfer dynamics of model DNA base pairs in the condensed phase

The dynamics of excited-state double proton transfer of model DNA base pairs, 7-azaindole dimers, is reported using femtosecond fluorescence spectroscopy. To elucidate the nature of the transfer in the condensed phase, here we examine variation of solvent polarity and viscosity, solute concentration, and isotopic fractionation. The rate of proton transfer is found to be significantly dependent on polarity and on the isotopic composition in the pair. Consistent with a stepwise mechanism, the results support the presence of an ionic intermediate species which forms on the femtosecond time scale and decays to the final tautomeric form on the picosecond time scale. We discuss the results in relation to the molecular motions involved and comment on recent claims of concerted transfer in the condensed phase. The nonconcerted mechanism is in agreement with previous isolated-molecule femtosecond dynamics and is also consistent with the most-recent high-level theoretical study on the same pair.

The answer to concerted versus step-wise controversy for the double proton transfer mechanism of 7-azaindole dimer in solution

The dynamics and mechanism of the double proton transfer reaction of the 7-azaindole dimer was investigated in solution by excitation wavelength dependence in steady-state and femtosecond time-resolved fluorescence spectroscopy. Femtosecond measurements in the UV region revealed that the dynamics of the dimer fluorescence exhibits remarkable change as the excitation wavelength was scanned from 280 to 313 nm. The fluorescence showed a biexponential decay (0.2 and 1.1 ps) with 280-nm excitation, whereas it exhibited a single exponential decay (1.1 ps) with 313-nm excitation (the red-edge of the dimer absorption). This observation clearly indicates that the 0.2-ps component is irrelevant to the proton transfer. In the visible region, we found that the tautomer fluorescence rises in accordance with the decay of the dimer fluorescence with a common time constant of 1.1 ps. This finding unambiguously denies the appearance of any intermediate species in between the dimer and tautomer excited states, indicating that the double proton transfer reaction is essentially a single-step process. We conclude that the double proton transfer of the 7-azaindole dimer in solution proceeds in the concerted manner from the lowest excited state with the 1.1-ps time constant. On the basis of the experimental data obtained, we discuss the long-lasting concerted versus step-wise controversy for the double proton transfer mechanism in solution.

Excited State Proton Transfer in 3-Methyl-7-Azaindole Dimer. Symmetry Control

The concerted double proton transfer undergone by the C(2)(h) dimer of 7-azaindole upon electronic excitation has also been reported to occur in 3-methyl-7-azaindole monocrystals and in dimers of this compound under free-jet conditions. However, the results obtained in this work for the 3-methyl-7-azaindole dimer formed in a 10(-4) M solution of the compound in 2-methylbutane suggest that the dimer produces no fluorescent signal consistent with a double proton transfer in the liquid phase or in a matrix. In this paper, the spectroscopic behavior of the doubly hydrogen bonded dimer of 3-methyl-7-azaindole is shown to provide a prominent example of molecular symmetry control over the spectroscopy of a substance. This interpretation opens up a new, interesting research avenue for exploring the ability of molecular symmetry to switch between proton-transfer mechanisms. It should be noted that symmetry changes in the 3-methyl-7-azaindole dimer are caused by an out-of-phase internal rotation of the two methyl groups.

On the photophysics of all-transpolyenes: Hexatriene versus octatetraene

The disparate photophysical behavior of trans-1,3,5-hexatriene (nonfluorescent) and trans-1,3,5,7-octatetraene (with two fluorescence emissions) in the gas phase is explained in terms of the tendency of their 1B(u) excited states to rotate about their terminal carbon-carbon single bonds in order to adopt a quasiplanar molecular form of lower energy than the 1B(u) state in the parent all-trans structure. The origin of their disparate photophysical behavior is that such a transformation is subject to a small energy barrier in octatetraene; the barrier produces two minima (two fluorescence emissions) in the corresponding potential-energy curve. Instead of an energy barrier, hexatriene gives a 1,3-diene species which falls to the ground state so rapidly that no emission is produced.

Charge-Transfer ππ* Excited State in the 7-Azaindole Dimer. A Hybrid Configuration Interactions Singles/Time-Dependent Density Functional Theory Description

The hybrid configuration interaction singles/time dependent density functional theory approach of Dreuw and Head-Gordon [Dreuw, A.; Head-Gordon, M. J. Am. Chem. Soc. 2004, 126, 4007] has been applied to study the potential energy landscape and accessibility of the charge-transfer pipi* excited state in the dimer of 7-azaindole, which has been traditionally considered a model for DNA base pairing. It is found that the charge-transfer pipi* excited state preferentially stabilizes the product of a single proton transfer. In this situation, the crossing between this state and the photoactive electronic state of the dimer is accessible. It is found that the charge-transfer pipi* excited state has a very steep potential energy profile with respect to any single proton-transfer coordinate and, in contrast, an extremely flat potential energy profile with respect to the stretch of the single proton-transfer complex. This is predicted to bring about a pair of rare fragments of the 7-azaindole dimer, physically separated and hence having very long lifetimes. This could have implications in the DNA base pairs of which the system is an analogue, in the form of replication errors.