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Beglaryan H, Isahakyan A, Terzyan A, Stepanyan V, Sarkeziyan V, Zulumyan N. Nickel-doped willemite-liebenbergite composite pigments synthesis via a precipitation route involving silica hydrogel derived from serpentine minerals and its modification. Heliyon 2024; 10:e40070. [PMID: 39568847 PMCID: PMC11577226 DOI: 10.1016/j.heliyon.2024.e40070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2024] [Revised: 10/27/2024] [Accepted: 10/31/2024] [Indexed: 11/22/2024] Open
Abstract
A simplified precipitation route involving silica hydrogel produced from serpentine-group minerals has been applied for pigment synthesis through the heat treatment of intermediates precipitated in the liquid phase, including H₂O, NaOH, ZnCl₂, NiCl₂, and the silica hydrogel mentioned. Investigations have shown that this method is applicable for Zn2-xNixSiO4 compositions when x does not exceed 1.0 and pigments coloration in different blue or green hues is defined by certain proportions of phases crystallized in final products on heating from 900 up to 1200 °C, namely, α-Zn2SiO4 representing nickel-doped willemite, nickel oxide NiO and liebenbergite Ni2SiO4. The modification of the applied method has allowed performing the interaction between the reagents when x exceeds 1.0 thereby increasing the yield of Ni2SiO4 phase in the products heated at 1200 °C from 70 up to about 90 (±4) % that actually remains unchangeable for x = 1.2 - 1.6. Liebenbergite increasing improves the color performance and stability of the synthesized green pigments in glaze.
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Affiliation(s)
- Hayk Beglaryan
- Institute of General and Inorganic Chemistry of the National Academy of Sciences of the Republic of Armenia, Lane 2, Argutyan Street 10, Yerevan, 0051, Armenia
| | - Anna Isahakyan
- Institute of General and Inorganic Chemistry of the National Academy of Sciences of the Republic of Armenia, Lane 2, Argutyan Street 10, Yerevan, 0051, Armenia
| | - Anna Terzyan
- Institute of General and Inorganic Chemistry of the National Academy of Sciences of the Republic of Armenia, Lane 2, Argutyan Street 10, Yerevan, 0051, Armenia
| | - Vardanush Stepanyan
- Institute of General and Inorganic Chemistry of the National Academy of Sciences of the Republic of Armenia, Lane 2, Argutyan Street 10, Yerevan, 0051, Armenia
| | - Verzhine Sarkeziyan
- Institute of General and Inorganic Chemistry of the National Academy of Sciences of the Republic of Armenia, Lane 2, Argutyan Street 10, Yerevan, 0051, Armenia
| | - Nshan Zulumyan
- Institute of General and Inorganic Chemistry of the National Academy of Sciences of the Republic of Armenia, Lane 2, Argutyan Street 10, Yerevan, 0051, Armenia
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Fatima N, Salehi H, Cueto-Díaz EJ, Desoutter A, Cuisinier F, Cunin F, Collart-Dutilleul PY. Nanostructured Porous Silicon for Bone Tissue Engineering: Kinetics of Particle Degradation and Si-Controlled Release. J Funct Biomater 2023; 14:493. [PMID: 37888158 PMCID: PMC10607156 DOI: 10.3390/jfb14100493] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2023] [Revised: 09/21/2023] [Accepted: 09/27/2023] [Indexed: 10/28/2023] Open
Abstract
Nanostructured porous silicon (pSi) is a synthetic silicon-based material. Its biocompatibility and bioresorbability in body fluids make pSi an appealing biomaterial for tissue engineering, with surfaces characteristics facilitating human cell adhesion and differentiation. The resorption kinetics of such porous biomaterials is crucial for in vivo bone regeneration, in order to adapt biomaterial resorption to tissue formation, and to control the release of loaded bioactive molecules. We investigated pSi as a bioactive scaffold for bone tissue engineering, with an emphasis on kinetics of pSi resorption and silicon release. PSi particles and chips were fabricated from crystalline silicon, and functionalized by oxidation and chemical grafting of amine groups to mimic biological structures. Materials resorption over time was investigated with Raman spectroscopy, infrared spectroscopy, and Scanning Electron Microscopy. Silicon release was followed by mass spectrometry. Particle degradation and inclusion in newly formed bone were studied in vivo. The in vitro experiments revealed that non-oxidized pSi had an accelerated initial dissolution in ddH2O and an inhibition of initial Si release in SBF. This high reactivity also led to transformation towards amorphous non-resorbable silica when incubated in SBF. PSi resorption started immediately with a maximal dissolution in the first 24 h. Later, the dissolution rate decreased over time. In comparison, the resorption process of oxidized pSi seemed delayed, but more continuous. This delayed dissolution increased the bioactivity and stability, leading to enhanced bone formation in vivo. Delayed pSi degradation provided a constant surge of silicic acid over time and promoted bone regeneration, demonstrating the high potential of pSi for bone tissue engineering: Oxidized pSi were almost completely resorbed after 2 months of healing, with remaining partially dissolved particles surrounded by newly formed bone. On the contrary, non-oxidized particles were still obviously present after 2 months with limited bone regeneration. This delayed resorption is consistent with the in vitro observations in SBF, and particles' transformation towards silica.
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Affiliation(s)
- Naveen Fatima
- LBN, University of Montpellier, 34000 Montpellier, France; (N.F.); (A.D.); (F.C.)
| | - Hamideh Salehi
- LBN, University of Montpellier, 34000 Montpellier, France; (N.F.); (A.D.); (F.C.)
| | - Eduardo J. Cueto-Díaz
- Institut Charles Gerhardt UMR 5253, CNRS-ENSCM-University of Montpellier, 34000 Montpellier, France; (E.J.C.-D.)
- Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, 28850 Madrid, Spain
| | - Alban Desoutter
- LBN, University of Montpellier, 34000 Montpellier, France; (N.F.); (A.D.); (F.C.)
| | - Frédéric Cuisinier
- LBN, University of Montpellier, 34000 Montpellier, France; (N.F.); (A.D.); (F.C.)
- Faculty of Dentistry, University of Montpellier, 34000 Montpellier, France
- Service Odontologie, Centre Hospitalier Universitaire de Montpellier, 34000 Montpellier, France
| | - Frédérique Cunin
- Institut Charles Gerhardt UMR 5253, CNRS-ENSCM-University of Montpellier, 34000 Montpellier, France; (E.J.C.-D.)
| | - Pierre-Yves Collart-Dutilleul
- LBN, University of Montpellier, 34000 Montpellier, France; (N.F.); (A.D.); (F.C.)
- Faculty of Dentistry, University of Montpellier, 34000 Montpellier, France
- Service Odontologie, Centre Hospitalier Universitaire de Montpellier, 34000 Montpellier, France
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Koopmann AK, Malfait WJ, Sepperer T, Huesing N. A Systematic Study on Bio-Based Hybrid Aerogels Made of Tannin and Silica. MATERIALS 2021; 14:ma14185231. [PMID: 34576455 PMCID: PMC8468457 DOI: 10.3390/ma14185231] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/09/2021] [Revised: 09/07/2021] [Accepted: 09/09/2021] [Indexed: 11/18/2022]
Abstract
Tannin-silica hybrid materials are expected to feature excellent mechanic-chemical stability, large surface areas, high porosity and possess, after carbothermal reduction, high thermal stability as well as high thermal conductivity. Typically, a commercially available tetraethoxysilane is used, but in this study, a more sustainable route was developed by using a glycol-based silica precursor, tetrakis(2-hydroxyethyl)orthosilicate (EGMS), which is highly water-soluble. In order to produce highly porous, homogeneous hybrid tannin-silica aerogels in a one-pot approach, a suitable crosslinker has to be used. It was found that an aldehyde-functionalized silane (triethoxysilylbutyraldehyde) enables the covalent bonding of tannin and silica. Solely by altering the processing parameters, distinctly different tannin-silica hybrid material properties could be achieved. In particular, the amount of crosslinker is a significant factor with respect to altering the materials’ properties, e.g., the specific surface area. Notably, 5 wt% of crosslinker presents an optimal percentage to obtain a sustainable tannin-silica hybrid system with high specific surface areas of roughly 800–900 m2 g−1 as well as a high mesopore volume. The synthesized tannin-silica hybrid aerogels permit the usage as green precursor for silicon carbide materials.
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Affiliation(s)
- Ann-Kathrin Koopmann
- Department of Chemistry and Physics of Materials, Paris-Lodron University of Salzburg, 5020 Salzburg, Austria;
- Salzburg Center for Smart Materials, 5020 Salzburg, Austria;
| | - Wim J. Malfait
- Swiss Federal Laboratories for Materials Science and Technology, Empa, 8600 Dübendorf, Switzerland;
| | - Thomas Sepperer
- Salzburg Center for Smart Materials, 5020 Salzburg, Austria;
- Forest Products Technology and Timber Constructions, Salzburg University of Applied Sciences, 5431 Kuchl, Austria
| | - Nicola Huesing
- Department of Chemistry and Physics of Materials, Paris-Lodron University of Salzburg, 5020 Salzburg, Austria;
- Salzburg Center for Smart Materials, 5020 Salzburg, Austria;
- Correspondence: ; Tel.: +43-662-8044-6265
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Chen Q, Milner ST. Predicting Raman Spectra of Condensed Polymer Phases from MD Simulations. Macromolecules 2017. [DOI: 10.1021/acs.macromol.7b01202] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Qin Chen
- Department of Chemical Engineering, The Pennsylvania State University, University Park, Pennsylvania 16802, United States
| | - Scott T. Milner
- Department of Chemical Engineering, The Pennsylvania State University, University Park, Pennsylvania 16802, United States
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Abstract
High-pressure single-crystal X-ray diffraction method with precise control of hydrostatic conditions, typically with helium or neon as the pressure-transmitting medium, has significantly changed our view on what happens with low-density silica phases under pressure. Coesite is a prototype material for pressure-induced amorphization. However, it was found to transform into a high-pressure octahedral (HPO) phase, or coesite-II and coesite-III. Given that the pressure is believed to be hydrostatic in two recent experiments, the different transformation pathways are striking. Based on molecular dynamic simulations with an ab initio parameterized potential, we reproduced all of the above experiments in three transformation pathways, including the one leading to an HPO phase. This octahedral phase has an oxygen hcp sublattice featuring 2 × 2 zigzag octahedral edge-sharing chains, however with some broken points (i.e., point defects). It transforms into α-PbO2 phase when it is relaxed under further compression. We show that the HPO phase forms through a continuous rearrangement of the oxygen sublattice toward hcp arrangement. The high-pressure amorphous phases can be described by an fcc and hcp sublattice mixture.
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Colboc H, Bazin D, Moguelet P, Frochot V, Weil R, Letavernier E, Jouanneau C, Francès C, Bachmeyer C, Bernaudin JF, Daudon M. Detection of silica and calcium carbonate deposits in granulomatous areas of skin sarcoidosis by μFourier transform infrared spectroscopy and Field Emission Scanning Electron Microscopy coupled with Energy Dispersive X-ray Spectroscopy analysis. CR CHIM 2016. [DOI: 10.1016/j.crci.2016.05.007] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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Danewalia SS, Sharma G, Thakur S, Singh K. Agricultural wastes as a resource of raw materials for developing low-dielectric glass-ceramics. Sci Rep 2016; 6:24617. [PMID: 27087123 PMCID: PMC4834533 DOI: 10.1038/srep24617] [Citation(s) in RCA: 48] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2015] [Accepted: 03/30/2016] [Indexed: 11/09/2022] Open
Abstract
Agricultural waste ashes are used as resource materials to synthesize new glass and glass-ceramics. The as-prepared materials are characterized using various techniques for their structural and dielectric properties to check their suitability in microelectronic applications. Sugarcane leaves ash exhibits higher content of alkali metal oxides than rice husk ash, which reduces the melting point of the components due to eutectic reactions. The addition of sugarcane leaves ash in rice husk ash promotes the glass formation. Additionally, it prevents the cristobalite phase formation. These materials are inherently porous, which is responsible for low dielectric permittivity i.e. 9 to 40. The presence of less ordered augite phase enhances the dielectric permittivity as compared to cristobalite and tridymite phases. The present glass-ceramics exhibit lower losses than similar materials synthesized using conventional minerals. The dielectric permittivity is independent to a wide range of temperature and frequency. The glass-ceramics developed with adequately devitrified phases can be used in microelectronic devices and other dielectric applications.
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Affiliation(s)
| | - Gaurav Sharma
- School of Physics and Materials Science, Thapar University, Patiala-147004, India
| | - Samita Thakur
- Department of Physics, School of Basic Sciences, Arni University, Kathgarh-176401, India
| | - K. Singh
- School of Physics and Materials Science, Thapar University, Patiala-147004, India
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Sukhomlinov SV, Müser MH. Charge-transfer potentials for ionic crystals: Cauchy violation, LO-TO splitting, and the necessity of an ionic reference state. J Chem Phys 2015; 143:224101. [PMID: 26671352 DOI: 10.1063/1.4936575] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Abstract
In this work, we study how including charge transfer into force fields affects the predicted elastic and vibrational Γ-point properties of ionic crystals, in particular those of rock salt. In both analytical and numerical calculations, we find that charge transfer generally leads to a negative contribution to the Cauchy pressure, P(C) ≡ C12 - C66, where C12 and C66 are elements of the elastic tensor. This contribution increases in magnitude with pressure for different charge-transfer approaches in agreement with results obtained with density functional theory (DFT). However, details of the charge-transfer models determine the pressure dependence of the longitudinal optical-transverse optical splitting and that for partial charges. These last two quantities increase with density as long as the chemical hardness depends at most weakly on the environment while experiments and DFT find a decrease. In order to reflect the correct trends, the charge-transfer expansion has to be made around ions and the chemical (bond) hardness has to increase roughly exponentially with inverse density or bond lengths. Finally, the adjustable force-field parameters only turn out meaningful, when the expansion is made around ions.
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Affiliation(s)
- Sergey V Sukhomlinov
- Jülich Supercomputer Centre, Institute for Advanced Simulations, FZ Jülich, Jülich, Germany
| | - Martin H Müser
- Jülich Supercomputer Centre, Institute for Advanced Simulations, FZ Jülich, Jülich, Germany
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Muthukumar K, Valentí R, Jeschke HO. Dynamics of tungsten hexacarbonyl, dicobalt octacarbonyl, and their fragments adsorbed on silica surfaces. J Chem Phys 2015; 140:184706. [PMID: 24832298 DOI: 10.1063/1.4873584] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023] Open
Abstract
Tungsten and cobalt carbonyls adsorbed on a substrate are typical starting points for the electron beam induced deposition of tungsten or cobalt based metallic nanostructures. We employ first principles molecular dynamics simulations to investigate the dynamics and vibrational spectra of W(CO)6 and W(CO)5 as well as Co2(CO)8 and Co(CO)4 precursor molecules on fully and partially hydroxylated silica surfaces. Such surfaces resemble the initial conditions of electron beam induced growth processes. We find that both W(CO)6 and Co2(CO)8 are stable at room temperature and mobile on a silica surface saturated with hydroxyl groups (OH), moving up to half an Angström per picosecond. In contrast, chemisorbed W(CO)5 or Co(CO)4 ions at room temperature do not change their binding site. These results contribute to gaining fundamental insight into how the molecules behave in the simulated time window of 20 ps and our determined vibrational spectra of all species provide signatures for experimentally distinguishing the form in which precursors cover a substrate.
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Affiliation(s)
- Kaliappan Muthukumar
- Institut für Theoretische Physik, Goethe-Universität Frankfurt, Max-von-Laue-Straße 1, 60438 Frankfurt am Main, Germany
| | - Roser Valentí
- Institut für Theoretische Physik, Goethe-Universität Frankfurt, Max-von-Laue-Straße 1, 60438 Frankfurt am Main, Germany
| | - Harald O Jeschke
- Institut für Theoretische Physik, Goethe-Universität Frankfurt, Max-von-Laue-Straße 1, 60438 Frankfurt am Main, Germany
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Ledyastuti M, Liang Y, Miranda CR, Matsuoka T. Comparison of thermodynamic stabilities and mechanical properties of CO2, SiO2, and GeO2 polymorphs by first-principles calculations. J Chem Phys 2012; 137:034703. [DOI: 10.1063/1.4735077] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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11
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Spiekermann G, Steele-MacInnis M, Schmidt C, Jahn S. Vibrational mode frequencies of silica species in SiO2-H2O liquids and glasses from ab initio molecular dynamics. J Chem Phys 2012; 136:154501. [DOI: 10.1063/1.3703667] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023] Open
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13
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Sala J, Guàrdia E, Martí J, Spångberg D, Masia M. Fitting properties from density functional theory based molecular dynamics simulations to parameterize a rigid water force field. J Chem Phys 2012; 136:054103. [DOI: 10.1063/1.3679402] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
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Liang Y, Ogundare FO, Miranda CR, Christie JK, Scandolo S. Structural properties and phase transitions in a silica clathrate. J Chem Phys 2011; 134:074506. [DOI: 10.1063/1.3532543] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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15
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Ivani I, Baumruk V, Bouř P. A Fourier Transform Method for Generation of Anharmonic Vibrational Molecular Spectra. J Chem Theory Comput 2010; 6:2095-102. [DOI: 10.1021/ct100150f] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Ivan Ivani
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, 166 10 Prague, Czech Republic, and Charles University, Faculty of Mathematics and Physics, Institute of Physics, Ke Karlovu 5, 12116, Prague, Czech Republic
| | - Vladimír Baumruk
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, 166 10 Prague, Czech Republic, and Charles University, Faculty of Mathematics and Physics, Institute of Physics, Ke Karlovu 5, 12116, Prague, Czech Republic
| | - Petr Bouř
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, 166 10 Prague, Czech Republic, and Charles University, Faculty of Mathematics and Physics, Institute of Physics, Ke Karlovu 5, 12116, Prague, Czech Republic
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16
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Adebayo GA, Liang Y, Miranda CR, Scandolo S. Infrared absorption of MgO at high pressures and temperatures: a molecular dynamic study. J Chem Phys 2009; 131:014506. [PMID: 19586109 DOI: 10.1063/1.3146902] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We calculate by molecular dynamics the optical functions of MgO in the far infrared region 100-1000 cm(-1), for pressures up to 40 GPa and temperatures up to 4000 K. An ab initio parametrized many-body force field is used to generate the trajectories. Infrared spectra are obtained from the time correlation of the polarization, and from Kramers-Kronig relations. The calculated spectra agree well with experimental data at ambient pressure. We find that the infrared absorption of MgO at CO(2) laser frequencies increases substantially with both pressure and temperature and we argue that this may explain the underestimation, with respect to theoretical calculations, of the high-pressure melting temperature of MgO determined in CO(2) laser-heated diamond-anvil cell experiments.
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Affiliation(s)
- Gboyega A Adebayo
- Department of Physics, University of Agriculture, PMB 2240, Abeokuta, Nigeria
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17
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Mohanty P, Li D, Liu T, Fei Y, Landskron K. Synthesis of Stishovite Nanocrystals from Periodic Mesoporous Silica. J Am Chem Soc 2009; 131:2764-5. [DOI: 10.1021/ja8075007] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Paritosh Mohanty
- Department of Chemistry, Lehigh University, Bethlehem, Pennsylvania 18015, and Geophysical Laboratory, Carnegie Institution of Washington, Washington, D.C. 20015
| | - Dong Li
- Department of Chemistry, Lehigh University, Bethlehem, Pennsylvania 18015, and Geophysical Laboratory, Carnegie Institution of Washington, Washington, D.C. 20015
| | - Tianbo Liu
- Department of Chemistry, Lehigh University, Bethlehem, Pennsylvania 18015, and Geophysical Laboratory, Carnegie Institution of Washington, Washington, D.C. 20015
| | - Yingwei Fei
- Department of Chemistry, Lehigh University, Bethlehem, Pennsylvania 18015, and Geophysical Laboratory, Carnegie Institution of Washington, Washington, D.C. 20015
| | - Kai Landskron
- Department of Chemistry, Lehigh University, Bethlehem, Pennsylvania 18015, and Geophysical Laboratory, Carnegie Institution of Washington, Washington, D.C. 20015
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Synthesis and pyrolysis of silicon and tin containing poly(2,2′-dioxy-1,1′-biphenoxy-phosphazenes). Eur Polym J 2008. [DOI: 10.1016/j.eurpolymj.2007.12.024] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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19
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Liang Y, Miranda CR, Scandolo S. Tuning oxygen packing in silica by nonhydrostatic pressure. PHYSICAL REVIEW LETTERS 2007; 99:215504. [PMID: 18233227 DOI: 10.1103/physrevlett.99.215504] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2007] [Indexed: 05/25/2023]
Abstract
The transformation of SiO2 from low pressure tetrahedral phases into denser octahedral phases takes place via the collapse of the oxygen sublattice into a close-packed arrangement. The transition paths and the resulting products are known to be affected by the presence of anisotropic stresses, which are difficult to control, so interpretation of the experimental results is problematic. Based on nonhydrostatic molecular dynamics simulations, we show that the collapse of the oxygen sublattice in the specific case of cristobalite is concomitant with the disappearance of tetrahedral units and that non hydrostatic stresses can be tuned to yield phases with different oxygen close-packed sublattices, including the alpha-PbO2-like phase, for which we provide a microscopic formation path, and phases with a cubic close packing, like anatase, not seen in experiments yet.
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Affiliation(s)
- Yunfeng Liang
- International School for Advanced Studies (SISSA), Trieste, Italy
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Carré A, Berthier L, Horbach J, Ispas S, Kob W. Amorphous silica modeled with truncated and screened Coulomb interactions: A molecular dynamics simulation study. J Chem Phys 2007; 127:114512. [PMID: 17887862 DOI: 10.1063/1.2777136] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We show that finite-range alternatives to the standard long-range pair potential for silica by van Beest et al. [Phys. Rev. Lett. 64, 1955 (1990)] might be used in molecular dynamics simulations. We study two such models that can be efficiently simulated since no Ewald summation is required. We first consider the Wolf method, where the Coulomb interactions are truncated at a cutoff distance rc such that the requirement of charge neutrality holds. Various static and dynamic quantities are computed and compared to results from simulations using Ewald summations. We find very good agreement for rc approximately 10 A. For lower values of rc, the long-range structure is affected which is accompanied by a slight acceleration of dynamic properties. In a second approach, the Coulomb interaction is replaced by an effective Yukawa interaction with two new parameters determined by a force fitting procedure. The same trend as for the Wolf method is seen. However, slightly larger cutoffs have to be used in order to obtain the same accuracy with respect to static and dynamic quantities as for the Wolf method.
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Affiliation(s)
- Antoine Carré
- Institut für Physik, Johannes Gutenberg-Universität Mainz, Staudinger Weg 7, 55099 Mainz, Germany
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21
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Hornícek J, Kaprálová P, Bour P. Simulations of vibrational spectra from classical trajectories: Calibration with ab initio force fields. J Chem Phys 2007; 127:084502. [PMID: 17764264 DOI: 10.1063/1.2756837] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Abstract
An algorithm allowing simulating vibrational spectra from classical time-dependent trajectories was applied for infrared absorption, vibrational circular dichroism, Raman, and Raman optical activity of model harmonic systems. The implementation of the theory within the TINKER molecular dynamics (MD) program package was tested with ab initio harmonic force fields in order to determine the feasibility for more extended MD simulations. The results suggest that sufficiently accurate frequencies can be simulated with integration time steps shorter than about 0.5 fs. For a given integration time step, lower vibrational frequencies ( approximately 0-2000 cm(-1)) could be reproduced with a higher accuracy than higher-frequency vibrational modes (e.g., O-H and C-H stretching). In principle, the algorithm also provides correct intensities for ideal systems. In applied simulations, however, the intensity profiles are affected by an unrealistic energy distribution between normal modes and a slow energy relaxation. Additionally, the energy fluctuations may cause weakening of the intensities on average. For ab initio force fields, these obstacles could be overcome by an arbitrary normal mode energy correction. For general MD simulations, averaging of many shorter MD trajectories started with randomly distributed atomic velocities provided the best spectral shapes. alpha-pinene, D-gluconic acid, formaldehyde dimer, and the acetylprolineamide molecule were used in the tests.
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Affiliation(s)
- Jan Hornícek
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo námestí 2, 16610 Prague 6, Czech Republic
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