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Maczák B, Gingl Z, Vadai G. General spectral characteristics of human activity and its inherent scale-free fluctuations. Sci Rep 2024; 14:2604. [PMID: 38297022 PMCID: PMC10830482 DOI: 10.1038/s41598-024-52905-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2023] [Accepted: 01/24/2024] [Indexed: 02/02/2024] Open
Abstract
The scale-free nature of daily human activity has been observed in different aspects; however, the description of its spectral characteristics is incomplete. General findings are complicated by the fact that-although actigraphy is commonly used in many research areas-the activity calculation methods are not standardized; therefore, activity signals can be different. The presence of 1/f noise in activity or acceleration signals was mostly analysed for short time windows, and the complete spectral characteristic has only been examined in the case of certain types of them. To explore the general spectral nature of human activity in greater detail, we have performed Power Spectral Density (PSD) based examination and Detrended Fluctuation Analysis (DFA) on several-day-long, triaxial actigraphic acceleration signals of 42 healthy, free-living individuals. We generated different types of activity signals from these, using different acceleration preprocessing techniques and activity metrics. We revealed that the spectra of different types of activity signals generally follow a universal characteristic including 1/f noise over frequencies above the circadian rhythmicity. Moreover, we discovered that the PSD of the raw acceleration signal has the same characteristic. Our findings prove that the spectral scale-free nature is generally inherent to the motor activity of healthy, free-living humans, and is not limited to any particular activity calculation method.
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Affiliation(s)
- Bálint Maczák
- Department of Technical Informatics, University of Szeged, 6720, Szeged, Hungary
| | - Zoltán Gingl
- Department of Technical Informatics, University of Szeged, 6720, Szeged, Hungary
| | - Gergely Vadai
- Department of Technical Informatics, University of Szeged, 6720, Szeged, Hungary.
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2
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Yuan Y, Peng C, Yang S, Xu M, Feng J, Li X, Zhang J. Rapid and facile method to prepare oxide precursor solution by using sonochemistry technology for WZTO thin film transistors. RSC Adv 2020; 10:28186-28192. [PMID: 35519095 PMCID: PMC9055696 DOI: 10.1039/d0ra05245k] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Accepted: 07/20/2020] [Indexed: 01/07/2023] Open
Abstract
In this paper, a rapid and facile method of preparing metal-oxide semiconductor precursor solution using sonochemistry technology is proposed. Compared with the traditional method (water bath above 60 °C for several hours), the efficiency of preparing solution is improved, because sonochemical reaction is found to accelerate the dissolution of solutes and the agitation of solution. The color comparison and thermal gravimetric and differential scanning calorimetry of solution confirme the formation of W-doped zinc tin oxide (WZTO) precursor solution with good performance. The effects of sonochemical reactions on the film structure, surface morphology, optical properties and chemical composition of WZTO thin films are analyzed by atomic force microscopy, X-ray diffraction, UV visible spectrum and X-ray photoelectron spectroscopy. The results show that the film has a smooth surface, an amorphous structure, a high transmittance and more M-O bonding. Hence, a rapid process of preparing WZTO solution (sonochemical treatment for 10 min) and fabricate TFT with high electron mobility (2.7 cm2 V-1 s-1) is established, while the corresponding mobility of the traditional method is 1.2 cm2 V-1 s-1. The results show that the sonochemical reaction can improve the efficiency of preparing solution by 1800% and it is a fast and efficient method for preparing precursor solutions.
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Affiliation(s)
- Yanyu Yuan
- Key Laboratory of Advanced Display and System Applications of Ministry of Education, Shanghai University Shanghai 200072 P. R. China
| | - Cong Peng
- Key Laboratory of Advanced Display and System Applications of Ministry of Education, Shanghai University Shanghai 200072 P. R. China
| | - Shibo Yang
- Key Laboratory of Advanced Display and System Applications of Ministry of Education, Shanghai University Shanghai 200072 P. R. China
| | - Meng Xu
- Key Laboratory of Advanced Display and System Applications of Ministry of Education, Shanghai University Shanghai 200072 P. R. China
| | - Jiayu Feng
- Key Laboratory of Advanced Display and System Applications of Ministry of Education, Shanghai University Shanghai 200072 P. R. China
| | - Xifeng Li
- Key Laboratory of Advanced Display and System Applications of Ministry of Education, Shanghai University Shanghai 200072 P. R. China
| | - Jianhua Zhang
- Key Laboratory of Advanced Display and System Applications of Ministry of Education, Shanghai University Shanghai 200072 P. R. China
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Bhattacharyya IM, Cohen S, Shalabny A, Bashouti M, Akabayov B, Shalev G. Specific and label-free immunosensing of protein-protein interactions with silicon-based immunoFETs. Biosens Bioelectron 2019; 132:143-161. [PMID: 30870641 DOI: 10.1016/j.bios.2019.03.003] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2018] [Revised: 03/03/2019] [Accepted: 03/04/2019] [Indexed: 01/02/2023]
Abstract
The importance of specific and label-free detection of proteins via antigen-antibody interactions for the development of point-of-care testing devices has greatly influenced the search for a more accessible, sensitive, low cost and robust sensors. The vision of silicon field-effect transistor (FET)-based sensors has been an attractive venue for addressing the challenge as it potentially offers a natural path to incorporate sensors with the existing mature Complementary Metal Oxide Semiconductor (CMOS) industry; this provides a stable and reliable technology, low cost for potential disposable devices, the potential for extreme minituarization, low electronic noise levels, etc. In the current review we focus on silicon-based immunological FET (ImmunoFET) for specific and label-free sensing of proteins through antigen-antibody interactions that can potentially be incorporated into the CMOS industry; hence, immunoFETs based on nano devices (nanowire, nanobelts, carbon nanotube, etc.) are not treated here. The first part of the review provides an overview of immunoFET principles of operation and challenges involved with the realization of such devices (i.e. e.g. Debye length, surface functionalization, noise, etc.). In the second part we provide an overview of the state-of-the-art silicon-based immunoFET structures and novelty, principles of operation and sensing performance reported to date.
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Affiliation(s)
- Ie Mei Bhattacharyya
- Department of Electrical & Computer Engineering, Ben-Gurion University of the Negev, POB 653, Beer-Sheva 8410501, Israel
| | - Shira Cohen
- Department of Chemistry, Ben-Gurion University of the Negev, POB 653, Beer-Sheva 8410501, Israel
| | - Awad Shalabny
- Jacob Blaustein Institutes for Desert Research, Seder Boqer Campus, Ben-Gurion University of the Negev, 8499000 Sede Boqer, Israel
| | - Muhammad Bashouti
- Jacob Blaustein Institutes for Desert Research, Seder Boqer Campus, Ben-Gurion University of the Negev, 8499000 Sede Boqer, Israel; The Ilse-Katz Institute for Nanoscale Science & Technology, Ben-Gurion University of the Negev, POB 653, Beer-Sheva 8410501, Israel
| | - Barak Akabayov
- Department of Chemistry, Ben-Gurion University of the Negev, POB 653, Beer-Sheva 8410501, Israel
| | - Gil Shalev
- Department of Electrical & Computer Engineering, Ben-Gurion University of the Negev, POB 653, Beer-Sheva 8410501, Israel; The Ilse-Katz Institute for Nanoscale Science & Technology, Ben-Gurion University of the Negev, POB 653, Beer-Sheva 8410501, Israel.
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Lowe BM, Sun K, Zeimpekis I, Skylaris CK, Green NG. Field-effect sensors - from pH sensing to biosensing: sensitivity enhancement using streptavidin-biotin as a model system. Analyst 2018; 142:4173-4200. [PMID: 29072718 DOI: 10.1039/c7an00455a] [Citation(s) in RCA: 78] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Field-Effect Transistor sensors (FET-sensors) have been receiving increasing attention for biomolecular sensing over the last two decades due to their potential for ultra-high sensitivity sensing, label-free operation, cost reduction and miniaturisation. Whilst the commercial application of FET-sensors in pH sensing has been realised, their commercial application in biomolecular sensing (termed BioFETs) is hindered by poor understanding of how to optimise device design for highly reproducible operation and high sensitivity. In part, these problems stem from the highly interdisciplinary nature of the problems encountered in this field, in which knowledge of biomolecular-binding kinetics, surface chemistry, electrical double layer physics and electrical engineering is required. In this work, a quantitative analysis and critical review has been performed comparing literature FET-sensor data for pH-sensing with data for sensing of biomolecular streptavidin binding to surface-bound biotin systems. The aim is to provide the first systematic, quantitative comparison of BioFET results for a single biomolecular analyte, specifically streptavidin, which is the most commonly used model protein in biosensing experiments, and often used as an initial proof-of-concept for new biosensor designs. This novel quantitative and comparative analysis of the surface potential behaviour of a range of devices demonstrated a strong contrast between the trends observed in pH-sensing and those in biomolecule-sensing. Potential explanations are discussed in detail and surface-chemistry optimisation is shown to be a vital component in sensitivity-enhancement. Factors which can influence the response, yet which have not always been fully appreciated, are explored and practical suggestions are provided on how to improve experimental design.
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Affiliation(s)
- Benjamin M Lowe
- Department of Electronics and Computer Science, Nano Research Group, University of Southampton, UK.
| | - Kai Sun
- Department of Electronics and Computer Science, Nano Research Group, University of Southampton, UK.
| | - Ioannis Zeimpekis
- Department of Electronics and Computer Science, Nano Research Group, University of Southampton, UK.
| | | | - Nicolas G Green
- Department of Electronics and Computer Science, Nano Research Group, University of Southampton, UK.
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Kuscu M, Akan OB. On the capacity of diffusion-based molecular communications with SiNW FET-based receiver. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2016; 2016:3043-3047. [PMID: 28268953 DOI: 10.1109/embc.2016.7591371] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Molecular communication (MC) is a bio-inspired communication method based on the exchange of molecules for information transfer among nanoscale devices. Although MC has been extensively studied from various aspects, limitations imposed by the physical design of transceiving units have been largely neglected in the literature. Recently, we have proposed a nanobioelectronic MC receiver architecture based on the nanoscale field effect transistor-based biosensor (bioFET) technology, providing noninvasive and sensitive molecular detection at nanoscale while producing electrical signals at the output. In this paper, we derive analytical closed-form expressions for the capacity and capacity-achieving input distribution for a memoryless MC channel with a silicon nanowire (SiNW) FET-based MC receiver. The resulting expressions could be used to optimize the information flow in MC systems equipped with nanobioelectronic receivers.
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Lu N, Gao A, Dai P, Mao H, Zuo X, Fan C, Wang Y, Li T. Ultrasensitive Detection of Dual Cancer Biomarkers with Integrated CMOS-Compatible Nanowire Arrays. Anal Chem 2015; 87:11203-8. [PMID: 26473941 DOI: 10.1021/acs.analchem.5b01729] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
A direct, rapid, highly sensitive and specific biosensor for detection of cancer biomarkers is desirable in early diagnosis and prognosis of cancer. However, the existing methods of detecting cancer biomarkers suffer from poor sensitivity as well as the requirement of enzymatic labeling or nanoparticle conjugations. Here, we proposed a two-channel PDMS microfluidic integrated CMOS-compatible silicon nanowire (SiNW) field-effect transistor arrays with potentially single use for label-free and ultrasensitive electrical detection of cancer biomarkers. The integrated nanowire arrays showed not only ultrahigh sensitivity of cytokeratin 19 fragment (CYFRA21-1) and prostate specific antigen (PSA) with detection to at least 1 fg/mL in buffer solution but also highly selectivity of discrimination from other similar cancer biomarkers. In addition, this method was used to detect both CYFRA21-1 and PSA real samples as low as 10 fg/mL in undiluted human serums. With its excellent properties and miniaturization, the integrated SiNW-FET device opens up great opportunities for a point-of-care test (POCT) for quick screening and early diagnosis of cancer and other complex diseases.
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Affiliation(s)
- Na Lu
- Science and Technology on Microsystem Laboratory, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences , Shanghai 200050, China
| | - Anran Gao
- Science and Technology on Microsystem Laboratory, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences , Shanghai 200050, China
| | - Pengfei Dai
- Science and Technology on Microsystem Laboratory, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences , Shanghai 200050, China
| | - Hongju Mao
- State Key Laboratory of Transducer Technology, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences , Shanghai 200050, China
| | - Xiaolei Zuo
- Division of Physical Biology & Bioimaging Center, Shanghai Synchrotron Radiation Facility, CAS Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences , Shanghai 201800, China
| | - Chunhai Fan
- Division of Physical Biology & Bioimaging Center, Shanghai Synchrotron Radiation Facility, CAS Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences , Shanghai 201800, China
| | - Yuelin Wang
- Science and Technology on Microsystem Laboratory, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences , Shanghai 200050, China
| | - Tie Li
- Science and Technology on Microsystem Laboratory, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences , Shanghai 200050, China
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Rajan NK, Duan X, Reed MA. Performance limitations for nanowire/nanoribbon biosensors. WILEY INTERDISCIPLINARY REVIEWS-NANOMEDICINE AND NANOBIOTECHNOLOGY 2013; 5:629-45. [PMID: 23897672 DOI: 10.1002/wnan.1235] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2013] [Accepted: 05/12/2013] [Indexed: 01/30/2023]
Abstract
Field-effect transistor-based biosensors (bioFETs) have shown great promise in the field of fast, ultra-sensitive, label-free detection of biomolecules. Reliability and accuracy, when trying to measure small concentrations, is of paramount importance for the translation of these research devices into the clinical setting. Our knowledge and experience with these sensors has reached a stage where we are able to identify three main aspects of bioFET sensing that currently limit their applications. By considering the intrinsic device noise as a limitation to the smallest measurable signal, we show how various parameters, processing steps and surface modifications, affect the limit of detection. We also introduce the signal-to-noise ratio of bioFETs as a universal performance metric, which allows us to gain better insight into the design of more sensitive devices. Another aspect that places a limit on the performance of bioFETs is screening by the electrolyte environment, which reduces the signal that could be potentially measured. Alternative functionalization and detection schemes that could enable the use of these charge-based sensors in physiological conditions are highlighted. Finally, the binding kinetics of the receptor-analyte system are considered, both in the context of extracting information about molecular interactions using the bioFET sensor platform and as a fundamental limitation to the number of molecules that bind to the sensor surface at steady-state conditions and to the signal that is generated. Some strategies to overcome these limitations are also proposed. Taken together, these performance-limiting issues, if solved, would bring bioFET sensors closer to clinical applications.
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Affiliation(s)
- Nitin K Rajan
- Department of Applied Physics, Yale University, New Haven, CT, USA
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Samanta S, Das K, Raychaudhuri AK. Low-frequency flicker noise in a MSM device made with single Si nanowire (diameter ≈ 50 nm). NANOSCALE RESEARCH LETTERS 2013; 8:165. [PMID: 23574820 PMCID: PMC3648426 DOI: 10.1186/1556-276x-8-165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2013] [Accepted: 03/20/2013] [Indexed: 05/04/2023]
Abstract
: Low-frequency flicker noise has been measured in a metal-semiconductor-metal (MSM) device made from a single strand of a single crystalline Si nanowire (diameter approximately 50 nm). Measurement was done with an alternating current (ac) excitation for the noise measurement superimposed with direct current (dc) bias that can be controlled independently. The observed noise has a spectral power density ∝1/fα. Application of the superimposed dc bias (retaining the ac bias unchanged) with a value more than the Schottky barrier height at the junction leads to a large suppression of the noise amplitude along with a change of α from 2 to ≈ 1. The dc bias-dependent part of the noise has been interpreted as arising from the interface region. The residual dc bias-independent flicker noise is suggested to arise from the single strand of Si nanowire, which has the conventional 1/f spectral power density.
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Affiliation(s)
- Sudeshna Samanta
- Department of Condensed Matter Physics and Material Sciences, S N Bose National Centre for Basic Sciences, Block JD, Sec 3, Salt Lake, Kolkata, 700098, India
| | - Kaustuv Das
- Department of Condensed Matter Physics and Material Sciences, S N Bose National Centre for Basic Sciences, Block JD, Sec 3, Salt Lake, Kolkata, 700098, India
| | - Arup Kumar Raychaudhuri
- Department of Condensed Matter Physics and Material Sciences, S N Bose National Centre for Basic Sciences, Block JD, Sec 3, Salt Lake, Kolkata, 700098, India
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Dorvel BR, Reddy B, Go J, Guevara CD, Salm E, Alam MA, Bashir R. Silicon nanowires with high-k hafnium oxide dielectrics for sensitive detection of small nucleic acid oligomers. ACS NANO 2012; 6:6150-64. [PMID: 22695179 PMCID: PMC3412126 DOI: 10.1021/nn301495k] [Citation(s) in RCA: 69] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Nanobiosensors based on silicon nanowire field effect transistors offer advantages of low cost, label-free detection, and potential for massive parallelization. As a result, these sensors have often been suggested as an attractive option for applications in point-of-care (POC) medical diagnostics. Unfortunately, a number of performance issues, such as gate leakage and current instability due to fluid contact, have prevented widespread adoption of the technology for routine use. High-k dielectrics, such as hafnium oxide (HfO(2)), have the known ability to address these challenges by passivating the exposed surfaces against destabilizing concerns of ion transport. With these fundamental stability issues addressed, a promising target for POC diagnostics and SiNWFETs has been small oligonucleotides, more specifically, microRNA (miRNA). MicroRNAs are small RNA oligonucleotides which bind to mRNAs, causing translational repression of proteins, gene silencing, and expressions are typically altered in several forms of cancer. In this paper, we describe a process for fabricating stable HfO(2) dielectric-based silicon nanowires for biosensing applications. Here we demonstrate sensing of single-stranded DNA analogues to their microRNA cousins using miR-10b and miR-21 as templates, both known to be upregulated in breast cancer. We characterize the effect of surface functionalization on device performance using the miR-10b DNA analogue as the target sequence and different molecular weight poly-l-lysine as the functionalization layer. By optimizing the surface functionalization and fabrication protocol, we were able to achieve <100 fM detection levels of the miR-10b DNA analogue, with a theoretical limit of detection of 1 fM. Moreover, the noncomplementary DNA target strand, based on miR-21, showed very little response, indicating a highly sensitive and highly selective biosensing platform.
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Affiliation(s)
- Brian R. Dorvel
- Department of Biophysics and Computational Biology, University of Illinois at Urbana Champaign, Urbana, Illinois, 61801
- Micro and Nanotechnology Lab, University of Illinois at Urbana Champaign, Urbana, Illinois, 61801
| | - Bobby Reddy
- Department of Electrical and Computer Engineering, University of Illinois at Urbana Champaign, Urbana, Illinois, 61801
- Micro and Nanotechnology Lab, University of Illinois at Urbana Champaign, Urbana, Illinois, 61801
| | - Jonghyun Go
- School of Electrical and Computer Engineering, Purdue University, West Lafayette, IN. 47906
| | - Carlos Duarte Guevara
- Department of Electrical and Computer Engineering, University of Illinois at Urbana Champaign, Urbana, Illinois, 61801
- Micro and Nanotechnology Lab, University of Illinois at Urbana Champaign, Urbana, Illinois, 61801
| | - Eric Salm
- Department of Bioengineering, University of Illinois at Urbana Champaign, Urbana, Illinois, 61801
- Micro and Nanotechnology Lab, University of Illinois at Urbana Champaign, Urbana, Illinois, 61801
| | - Muhammad Ashraful Alam
- School of Electrical and Computer Engineering, Purdue University, West Lafayette, IN. 47906
| | - Rashid Bashir
- Department of Electrical and Computer Engineering, University of Illinois at Urbana Champaign, Urbana, Illinois, 61801
- Department of Bioengineering, University of Illinois at Urbana Champaign, Urbana, Illinois, 61801
- Micro and Nanotechnology Lab, University of Illinois at Urbana Champaign, Urbana, Illinois, 61801
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Rajan NK, Routenberg DA, Reed MA. Optimal signal-to-noise ratio for silicon nanowire biochemical sensors. APPLIED PHYSICS LETTERS 2011; 98:264107-2641073. [PMID: 21799538 PMCID: PMC3144966 DOI: 10.1063/1.3608155] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2011] [Accepted: 06/15/2011] [Indexed: 05/24/2023]
Abstract
The signal-to-noise ratio (SNR) for silicon nanowire field-effect transistors operated in an electrolyte environment is an essential figure-of-merit to characterize and compare the detection limit of such devices when used in an exposed channel configuration as biochemical sensors. We employ low frequency noise measurements to determine the regime for optimal SNR. We find that SNR is not significantly affected by the electrolyte concentration, composition, or pH, leading us to conclude that the major contributions to the SNR come from the intrinsic device quality. The results presented here show that SNR is maximized at the peak transconductance.
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