1
|
Odstrcil M, Lebugle M, Lachat T, Raabe J, Holler M. Fast positioning for X-ray scanning microscopy by a combined motion of sample and beam-defining optics. JOURNAL OF SYNCHROTRON RADIATION 2019; 26:504-509. [PMID: 30855261 PMCID: PMC6412177 DOI: 10.1107/s160057751801785x] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2018] [Accepted: 12/18/2018] [Indexed: 05/18/2023]
Abstract
Scanning X-ray microscopy such as X-ray ptychography requires accurate and fast positioning of samples in the X-ray beam. Sample stages often have a high mobile mass as they may carry additional mechanics or mirrors for position measurements. The high mobile mass of a piezo stage can introduce vibrations in the setup that will lead to imaging quality deterioration. Sample stages also require a large travel range which results in a slow positioning step response and thus high positioning overhead. Moving lightweight X-ray optics, such as focusing Fresnel zone plates, instead of the sample can improve the situation but it may lead to undesired variations in the illumination probe which may result in reconstruction artifacts. This paper presents a combined approach in which a slow sample stage mechanism covers the long distance range for a large field of view, and a light-weight optics scanner with a small travel range creates a superimposed motion to achieve a fast step response. The step response in the ptychographic tomography instrument used was thereby improved by an order of magnitude, allowing for efficient measurement without loss of imaging quality.
Collapse
Affiliation(s)
- Michal Odstrcil
- Swiss Light Source, Paul Scherrer Institute, Villigen 5232, Switzerland
| | - Maxime Lebugle
- Laboratory for Micro and Nanotechnology, Paul Scherrer Institute, Villigen 5232, Switzerland
| | - Thierry Lachat
- Swiss Light Source, Paul Scherrer Institute, Villigen 5232, Switzerland
| | - Jörg Raabe
- Swiss Light Source, Paul Scherrer Institute, Villigen 5232, Switzerland
| | - Mirko Holler
- Swiss Light Source, Paul Scherrer Institute, Villigen 5232, Switzerland
| |
Collapse
|
2
|
Noh DY, Kim C, Kim Y, Song C. Enhancing resolution in coherent x-ray diffraction imaging. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2016; 28:493001. [PMID: 27754981 DOI: 10.1088/0953-8984/28/49/493001] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Achieving a resolution near 1 nm is a critical issue in coherent x-ray diffraction imaging (CDI) for applications in materials and biology. Albeit with various advantages of CDI based on synchrotrons and newly developed x-ray free electron lasers, its applications would be limited without improving resolution well below 10 nm. Here, we review the issues and efforts in improving CDI resolution including various methods for resolution determination. Enhancing diffraction signal at large diffraction angles, with the aid of interference between neighboring strong scatterers or templates, is reviewed and discussed in terms of increasing signal-to-noise ratio. In addition, we discuss errors in image reconstruction algorithms-caused by the discreteness of the Fourier transformations involved-which degrade the spatial resolution, and suggest ways to correct them. We expect this review to be useful for applications of CDI in imaging weakly scattering soft matters using coherent x-ray sources including x-ray free electron lasers.
Collapse
Affiliation(s)
- Do Young Noh
- Department of Physics and Photon Science, Gwangju Institute of Science and Technology, Gwangju 61005, Korea
| | | | | | | |
Collapse
|
3
|
Anthony N, Cadenazzi G, Kirkwood H, Huwald E, Nugent K, Abbey B. A Direct Approach to In-Plane Stress Separation using Photoelastic Ptychography. Sci Rep 2016; 6:30541. [PMID: 27488605 PMCID: PMC4973287 DOI: 10.1038/srep30541] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2016] [Accepted: 07/06/2016] [Indexed: 11/09/2022] Open
Abstract
The elastic properties of materials, either under external load or in a relaxed state, influence their mechanical behaviour. Conventional optical approaches based on techniques such as photoelasticity or thermoelasticity can be used for full-field analysis of the stress distribution within a specimen. The circular polariscope in combination with holographic photoelasticity allows the sum and difference of principal stress components to be determined by exploiting the temporary birefringent properties of materials under load. Phase stepping and interferometric techniques have been proposed as a method for separating the in-plane stress components in two-dimensional photoelasticity experiments. In this paper we describe and demonstrate an alternative approach based on photoelastic ptychography which is able to obtain quantitative stress information from far fewer measurements than is required for interferometric based approaches. The complex light intensity equations based on Jones calculus for this setup are derived. We then apply this approach to the problem of a disc under diametrical compression. The experimental results are validated against the analytical solution derived by Hertz for the theoretical displacement fields for an elastic disc subject to point loading.
Collapse
Affiliation(s)
- Nicholas Anthony
- ARC Centre of Excellence in Advanced Molecular Imaging, Department of Chemistry and Physics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria 3086, Australia
| | - Guido Cadenazzi
- ARC Centre of Excellence in Advanced Molecular Imaging, Department of Chemistry and Physics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria 3086, Australia
| | - Henry Kirkwood
- ARC Centre of Excellence in Advanced Molecular Imaging, Department of Chemistry and Physics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria 3086, Australia
| | - Eric Huwald
- Department of Chemistry and Physics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria 3086, Australia
| | - Keith Nugent
- ARC Centre of Excellence in Advanced Molecular Imaging, Department of Chemistry and Physics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria 3086, Australia
| | - Brian Abbey
- ARC Centre of Excellence in Advanced Molecular Imaging, Department of Chemistry and Physics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria 3086, Australia
| |
Collapse
|
4
|
Jones MWM, Elgass K, Junker MD, Luu MB, Ryan MT, Peele AG, van Riessen GA. Mapping biological composition through quantitative phase and absorption X-ray ptychography. Sci Rep 2014; 4:6796. [PMID: 25348877 PMCID: PMC4210942 DOI: 10.1038/srep06796] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2014] [Accepted: 10/07/2014] [Indexed: 11/09/2022] Open
Abstract
Isolating compositional information in biological X-ray imaging can be problematic as such information is conflated with thickness and density variations when viewing in projection through a sample. We demonstrate an effective method for identifying variations in material composition by simultaneously using the quantitative phase and magnitude images provided through soft X-ray ptychography. Using this approach we show significantly increased contrast and improved reliability of the identification of intracellular features from uncharacterised samples. While demonstrated for X-ray ptychography, this method is immediately applicable to electron and optical microscopy methods where the complex transmission function of the sample is recovered.
Collapse
Affiliation(s)
- Michael W M Jones
- ARC Centre of Excellence for Coherent X-Ray Science, Department of Physics, La Trobe University, Bundoora 3086, Australia
| | - Kirstin Elgass
- ARC Centre of Excellence for Coherent X-Ray Science, Department of Biochemistry, La Trobe University, Bundoora 3086, Australia
| | - Mark D Junker
- ARC Centre of Excellence for Coherent X-Ray Science, Department of Physics, La Trobe University, Bundoora 3086, Australia
| | - Mac B Luu
- ARC Centre of Excellence for Coherent X-Ray Science, Department of Physics, La Trobe University, Bundoora 3086, Australia
| | - Michael T Ryan
- ARC Centre of Excellence for Coherent X-Ray Science, Department of Biochemistry, La Trobe University, Bundoora 3086, Australia
| | - Andrew G Peele
- 1] ARC Centre of Excellence for Coherent X-Ray Science, Department of Physics, La Trobe University, Bundoora 3086, Australia [2] Australian Synchrotron, 800 Blackburn Rd, Clayton 3168, Australia [3] ARC Centre of Excellence for Advanced Molecular Imaging, Australian Synchrotron, 800 Blackburn Rd, Clayton 3168, Australia
| | - Grant A van Riessen
- ARC Centre of Excellence for Coherent X-Ray Science, Department of Physics, La Trobe University, Bundoora 3086, Australia
| |
Collapse
|
5
|
Thibault P, Guizar-Sicairos M, Menzel A. Coherent imaging at the diffraction limit. JOURNAL OF SYNCHROTRON RADIATION 2014; 21:1011-8. [PMID: 25177990 PMCID: PMC4181642 DOI: 10.1107/s1600577514015343] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2014] [Accepted: 06/30/2014] [Indexed: 05/29/2023]
Abstract
X-ray ptychography, a scanning coherent diffractive imaging technique, holds promise for imaging with dose-limited resolution and sensitivity. If the foreseen increase of coherent flux by orders of magnitude can be matched by additional technological and analytical advances, ptychography may approach imaging speeds familiar from full-field methods while retaining its inherently quantitative nature and metrological versatility. Beyond promises of high throughput, spectroscopic applications in three dimensions become feasible, as do measurements of sample dynamics through time-resolved imaging or careful characterization of decoherence effects.
Collapse
Affiliation(s)
- Pierre Thibault
- Department of Physics and Astronomy, University College London, UK
| | | | | |
Collapse
|
6
|
Jones MW, Dearnley MK, van Riessen GA, Abbey B, Putkunz CT, Junker MD, Vine DJ, McNulty I, Nugent KA, Peele AG, Tilley L. Rapid, low dose X-ray diffractive imaging of the malaria parasite Plasmodium falciparum. Ultramicroscopy 2014; 143:88-92. [DOI: 10.1016/j.ultramic.2013.09.003] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2013] [Revised: 09/23/2013] [Accepted: 09/23/2013] [Indexed: 11/30/2022]
|
7
|
Kim C, Kim Y, Kim SS, Kang HC, McNulty I, Noh DY. Fresnel coherent diffractive imaging of elemental distributions in nanoscale binary compounds. OPTICS EXPRESS 2014; 22:5528-5535. [PMID: 24663893 DOI: 10.1364/oe.22.005528] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
We report quantitative determination of elemental distribution in binary compounds with nano meter scale spatial resolution using x-ray Fresnel coherent diffractive imaging (FCDI). We show that the quantitative magnitude and phase values of the x-ray wave exiting an object determined by FCDI can be utilized to obtain full-field atomic density maps of each element independently. The proposed method was demonstrated by reconstructing the density maps of Pt and NiO in a Pt-NiO binary compound with about 18 nm spatial resolution.
Collapse
|
8
|
Jones MWM, van Riessen GA, Abbey B, Putkunz CT, Junker MD, Balaur E, Vine DJ, McNulty I, Chen B, Arhatari BD, Frankland S, Nugent KA, Tilley L, Peele AG. Whole-cell phase contrast imaging at the nanoscale using Fresnel coherent diffractive imaging tomography. Sci Rep 2014; 3:2288. [PMID: 23887204 PMCID: PMC3724183 DOI: 10.1038/srep02288] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2013] [Accepted: 07/10/2013] [Indexed: 11/29/2022] Open
Abstract
X-ray tomography can provide structural information of whole cells in close to their native state. Radiation-induced damage, however, imposes a practical limit to image resolution, and as such, a choice between damage, image contrast, and image resolution must be made. New coherent diffractive imaging techniques, such Fresnel Coherent Diffractive Imaging (FCDI), allows quantitative phase information with exceptional dose efficiency, high contrast, and nano-scale resolution. Here we present three-dimensional quantitative images of a whole eukaryotic cell by FCDI at a spatial resolution below 70 nm with sufficient phase contrast to distinguish major cellular components. From our data, we estimate that the minimum dose required for a similar resolution is close to that predicted by the Rose criterion, considerably below accepted estimates of the maximum dose a frozen-hydrated cell can tolerate. Based on the dose efficiency, contrast, and resolution achieved, we expect this technique will find immediate applications in tomographic cellular characterisation.
Collapse
Affiliation(s)
- Michael W M Jones
- ARC Centre of Excellence for Coherent X-Ray Science, Department of Physics, La Trobe University, Victoria 3086, Australia
| | | | | | | | | | | | | | | | | | | | | | | | | | | |
Collapse
|
9
|
Holler M, Diaz A, Guizar-Sicairos M, Karvinen P, Färm E, Härkönen E, Ritala M, Menzel A, Raabe J, Bunk O. X-ray ptychographic computed tomography at 16 nm isotropic 3D resolution. Sci Rep 2014; 4:3857. [PMID: 24457289 PMCID: PMC3900995 DOI: 10.1038/srep03857] [Citation(s) in RCA: 232] [Impact Index Per Article: 23.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2013] [Accepted: 01/08/2014] [Indexed: 11/09/2022] Open
Abstract
X-ray ptychography is a scanning variant of coherent diffractive imaging with the ability to image large fields of view at high resolution. It further allows imaging of non-isolated specimens and can produce quantitative mapping of the electron density distribution in 3D when combined with computed tomography. The method does not require imaging lenses, which makes it dose efficient and suitable to multi-keV X-rays, where efficient photon counting, pixelated detectors are available. Here we present the first highly resolved quantitative X-ray ptychographic tomography of an extended object yielding 16 nm isotropic 3D resolution recorded at 2 Å wavelength. This first-of-its-kind demonstration paves the way for ptychographic X-ray tomography to become a promising method for X-ray imaging of representative sample volumes at unmatched resolution, opening tremendous potential for characterizing samples in materials science and biology by filling the resolution gap between electron microscopy and other X-ray imaging techniques.
Collapse
Affiliation(s)
- M Holler
- Paul Scherrer Institut, 5232 Villigen PSI, Switzerland
| | - A Diaz
- Paul Scherrer Institut, 5232 Villigen PSI, Switzerland
| | | | - P Karvinen
- Paul Scherrer Institut, 5232 Villigen PSI, Switzerland
| | - Elina Färm
- Department of Chemistry, University of Helsinki, Helsinki, FI-00014, Finland
| | - Emma Härkönen
- Department of Chemistry, University of Helsinki, Helsinki, FI-00014, Finland
| | - Mikko Ritala
- Department of Chemistry, University of Helsinki, Helsinki, FI-00014, Finland
| | - A Menzel
- Paul Scherrer Institut, 5232 Villigen PSI, Switzerland
| | - J Raabe
- Paul Scherrer Institut, 5232 Villigen PSI, Switzerland
| | - O Bunk
- Paul Scherrer Institut, 5232 Villigen PSI, Switzerland
| |
Collapse
|
10
|
Nazaretski E, Kim J, Yan H, Lauer K, Eom D, Shu D, Maser J, Pešić Z, Wagner U, Rau C, Chu YS. Performance and characterization of the prototype nm-scale spatial resolution scanning multilayer Laue lenses microscope. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2013; 84:033701. [PMID: 23556821 DOI: 10.1063/1.4774387] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Synchrotron based x-ray microscopy established itself as a prominent tool for noninvasive investigations in many areas of science and technology. Many facilities around the world routinely achieve sub-micrometer resolution with a few instruments capable of imaging with the spatial resolution better than 100 nm. With an ongoing effort to push the 2D/3D resolution down to 10 nm in the hard x-ray regime both fabrication of the nano-focusing optics and stability of a microscope become extremely challenging. In this work we present our approach to overcome technical challenges on the path towards high spatial resolution hard x-ray microscopy and demonstrate the performance of a scanning fluorescence microscope equipped with the multilayer Laue lenses focusing optics.
Collapse
Affiliation(s)
- E Nazaretski
- Brookhaven National Laboratory, Upton, New York 11973, USA
| | | | | | | | | | | | | | | | | | | | | |
Collapse
|
11
|
Holler M, Raabe J, Diaz A, Guizar-Sicairos M, Quitmann C, Menzel A, Bunk O. An instrument for 3D x-ray nano-imaging. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2012; 83:073703. [PMID: 22852697 DOI: 10.1063/1.4737624] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
We present an instrument dedicated to 3D scanning x-ray microscopy, allowing a sample to be precisely scanned through a beam while the angle of x-ray incidence can be changed. The position of the sample is controlled with respect to the beam-defining optics by laser interferometry. The instrument achieves a position stability better than 10 nm standard deviation. The instrument performance is assessed using scanning x-ray diffraction microscopy and we demonstrate a resolution of 18 nm in 2D imaging of a lithographic test pattern while the beam was defined by a pinhole of 3 μm in diameter. In 3D on a test object of copper interconnects of a microprocessor, a resolution of 53 nm is achieved.
Collapse
Affiliation(s)
- M Holler
- Paul Scherrer Institut, 5232 Villigen PSI, Switzerland.
| | | | | | | | | | | | | |
Collapse
|