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Das A, Arunan E. Unified classification of non-covalent bonds formed by main group elements: a bridge to chemical bonding. Phys Chem Chem Phys 2023; 25:22583-22594. [PMID: 37435670 DOI: 10.1039/d3cp00370a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/13/2023]
Abstract
Using correlation plots of binding energy and electron density at the bond critical point, we investigated the nature of intermolecular non-covalent bonds (D-X⋯A, where D = O/S/F/Cl/Br/H, mostly, X = main group elements (except noble gases), A = H2O, NH3, H2S, PH3, HCHO, C2H4, HCN, CO, CH3OH, and CH3OCH3). The binding energies were calculated at the MP2 level of theory, followed by Atoms in Molecules (AIM) analysis of the ab initio wave functions to obtain the electron density at the bond critical point (BCP). For each non-covalent bond, the slopes of the binding energy versus electron density plot have been determined. Based on their slopes, non-covalent bonds are classified as non-covalent bond closed-shell (NCB-C) or non-covalent bond shared-shell (NCB-S). Intriguingly, extrapolating the slopes of the NCB-C and NCB-S cases leads to intramolecular "ionic" and "covalent" bonding regimes, establishing a link between such intermolecular non-covalent and intramolecular chemical bonds. With this new classification, hydrogen bonds and other non-covalent bonds formed by a main-group atom in a covalent molecule are classified as NCB-S. Atoms found in ionic molecules generally form NCB-C type bonds, with the exception of carbon which also forms NCB-C type bonds. Molecules with a tetravalent carbon do behave like ions in ionic molecules such as NaCl and interact with other molecules through NCB-C type bonds. As with the chemical bonds, there are some non-covalent bonds that are intermediate cases.
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Affiliation(s)
- Arijit Das
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore 560012, India.
| | - Elangannan Arunan
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore 560012, India.
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Abstract
The halogen bond occurs when there is evidence of a net attractive interaction between an electrophilic region associated with a halogen atom in a molecular entity and a nucleophilic region in another, or the same, molecular entity. In this fairly extensive review, after a brief history of the interaction, we will provide the reader with a snapshot of where the research on the halogen bond is now, and, perhaps, where it is going. The specific advantages brought up by a design based on the use of the halogen bond will be demonstrated in quite different fields spanning from material sciences to biomolecular recognition and drug design.
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Affiliation(s)
- Gabriella Cavallo
- Laboratory
of Nanostructured Fluorinated Materials (NFMLab), Department of Chemistry,
Materials and Chemical Engineering “Giulio Natta”, Politecnico di Milano, Via L. Mancinelli 7, I-20131 Milano, Italy
| | - Pierangelo Metrangolo
- Laboratory
of Nanostructured Fluorinated Materials (NFMLab), Department of Chemistry,
Materials and Chemical Engineering “Giulio Natta”, Politecnico di Milano, Via L. Mancinelli 7, I-20131 Milano, Italy
- VTT-Technical
Research Centre of Finland, Biologinkuja 7, 02150 Espoo, Finland
| | - Roberto Milani
- VTT-Technical
Research Centre of Finland, Biologinkuja 7, 02150 Espoo, Finland
| | - Tullio Pilati
- Laboratory
of Nanostructured Fluorinated Materials (NFMLab), Department of Chemistry,
Materials and Chemical Engineering “Giulio Natta”, Politecnico di Milano, Via L. Mancinelli 7, I-20131 Milano, Italy
| | - Arri Priimagi
- Department
of Chemistry and Bioengineering, Tampere
University of Technology, Korkeakoulunkatu 8, FI-33101 Tampere, Finland
| | - Giuseppe Resnati
- Laboratory
of Nanostructured Fluorinated Materials (NFMLab), Department of Chemistry,
Materials and Chemical Engineering “Giulio Natta”, Politecnico di Milano, Via L. Mancinelli 7, I-20131 Milano, Italy
| | - Giancarlo Terraneo
- Laboratory
of Nanostructured Fluorinated Materials (NFMLab), Department of Chemistry,
Materials and Chemical Engineering “Giulio Natta”, Politecnico di Milano, Via L. Mancinelli 7, I-20131 Milano, Italy
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Gilday LC, Robinson SW, Barendt TA, Langton MJ, Mullaney BR, Beer PD. Halogen Bonding in Supramolecular Chemistry. Chem Rev 2015; 115:7118-95. [DOI: 10.1021/cr500674c] [Citation(s) in RCA: 913] [Impact Index Per Article: 101.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Lydia C. Gilday
- Chemistry Research Laboratory,
Department of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, United Kingdom
| | - Sean W. Robinson
- Chemistry Research Laboratory,
Department of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, United Kingdom
| | - Timothy A. Barendt
- Chemistry Research Laboratory,
Department of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, United Kingdom
| | - Matthew J. Langton
- Chemistry Research Laboratory,
Department of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, United Kingdom
| | - Benjamin R. Mullaney
- Chemistry Research Laboratory,
Department of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, United Kingdom
| | - Paul D. Beer
- Chemistry Research Laboratory,
Department of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, United Kingdom
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Moore DT, Miller RE. Solvation of HF by Molecular Hydrogen: Helium Nanodroplet Vibrational Spectroscopy. J Phys Chem A 2003. [DOI: 10.1021/jp0306343] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- D. T. Moore
- Department of Chemistry, University of North Carolina, Chapel Hill, North Carolina 27599
| | - R. E. Miller
- Department of Chemistry, University of North Carolina, Chapel Hill, North Carolina 27599
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Sankaran K, Sundararajan K, Viswanathan K. Trimethyl phosphate–CCl 4 interaction: experimental and computational evidence for Cl⋯O interactions. J Mol Struct 2002. [DOI: 10.1016/s0022-2860(01)00967-x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Legon AC, Thumwood JMA, Waclawik ER. Rotational spectroscopy of H[sub 3]P⋯BrCl and the systematics of intermolecular electron transfer in the series B⋯BrCl, where B=CO, HCN, H[sub 2]O, C[sub 2]H[sub 2], C[sub 2]H[sub 4], H[sub 2]S, NH[sub 3], and PH[sub 3]. J Chem Phys 2000. [DOI: 10.1063/1.1290031] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Legon AC. Präreaktive Komplexe der Dihalogene XY mit Lewis-Basen B in der Gasphase: eine systematische Studie der Halogen-Analoga B⋅⋅⋅XY der Wasserstoffbrückenbindungen B⋅⋅⋅HX. Angew Chem Int Ed Engl 1999. [DOI: 10.1002/(sici)1521-3757(19990917)111:18<2850::aid-ange2850>3.0.co;2-6] [Citation(s) in RCA: 75] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Canagaratna M, Phillips JA, Goodfriend H, Fiacco DL, Ott ME, Harms B, Leopold KR. Structures of the van der Waals Isomers of Halosulfuric Acids: Microwave Spectra of HX-SO3 (X = F, Cl, Br). JOURNAL OF MOLECULAR SPECTROSCOPY 1998; 192:338-347. [PMID: 9831500 DOI: 10.1006/jmsp.1998.7712] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
The complexes of SO3 with HF, HCl, and HBr have been studied by microwave spectroscopy. In all three systems, the halogen atom approaches the SO3 on or near its C3 axis, and the vibrationally averaged structure is that of a symmetric top. The S-X bond lengths are 2.655(10), 3.1328(57), and 3.2339(85) Å for the HF, HCl, and HBr complexes, respectively, and in all three systems the out-of-plane distortion of the SO3 is negligible. In HF-SO3, the hydrogen points away from the SO3 and hyperfine structure in the DF complex gives an average angle of 47.7 degrees with respect to the vibrationally averaged C3 axis of the complex. In the HCl and HBr complexes, however, the HX unit is nearly parallel to the SO3 plane. In HCl-SO3, the HCl forms a 72.8 degrees angle with the average C3 axis of the complex, with the proton tilting slightly toward the SO3. In HBr-SO3, the average orientation of the HBr is 73.0 degrees off the symmetry axis of the complex, but the direction of the tilt (toward or away from the SO3) is not determined. Although the hydrogen halides react with SO3 in bulk to produce halosulfuric acids, these gas-phase complexes are much like weakly bound dimers. Copyright 1998 Academic Press.
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Affiliation(s)
- M Canagaratna
- Department of Chemistry, University of Minnesota, 207 Pleasant St., SE, Minneapolis, MN, 55455
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Alkorta I, Rozas I, Elguero J. Charge-Transfer Complexes between Dihalogen Compounds and Electron Donors. J Phys Chem A 1998. [DOI: 10.1021/jp982251o] [Citation(s) in RCA: 170] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Ibon Alkorta
- Instituto de Química Médica (C.S.I.C.), Juan de la Cierva, 3, 28006-Madrid, Spain
| | - Isabel Rozas
- Instituto de Química Médica (C.S.I.C.), Juan de la Cierva, 3, 28006-Madrid, Spain
| | - José Elguero
- Instituto de Química Médica (C.S.I.C.), Juan de la Cierva, 3, 28006-Madrid, Spain
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Brinck T. The use of the electrostatic potential for analysis and prediction of intermolecular interactions. THEORETICAL AND COMPUTATIONAL CHEMISTRY 1998. [DOI: 10.1016/s1380-7323(98)80005-8] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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Tuchler MF, Wright S, McDonald JD. Real time study of bimolecular interactions: Direct detection of internal conversion involving Br(2P1/2)+I2 initiated from a van der Waals dimer. J Chem Phys 1997. [DOI: 10.1063/1.473366] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Bloemink HI, Legon AC. The complex H3N⋅⋅⋅Br2 characterized in the gas phase by rotational spectroscopy. J Chem Phys 1995. [DOI: 10.1063/1.469788] [Citation(s) in RCA: 25] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Peebles S, Fowler P, Legon A. Anisotropic repulsion in complexes B.Cl2 and B.HCl: The shape of the chlorine atom-in-a-molecule. Chem Phys Lett 1995. [DOI: 10.1016/0009-2614(95)00532-9] [Citation(s) in RCA: 25] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Legon A. Mulliken n.aσ and bπ.aσ complexes B…Cl2 in the gas phase: rules for predicting angular geometries and nature of the interaction. Chem Phys Lett 1995. [DOI: 10.1016/0009-2614(95)00309-r] [Citation(s) in RCA: 51] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Bloemink HI, Hinds K, Legon AC, Thorn JC. Characterisation of the Intermediate C2H4…Cl2 in a Gaseous Mixture of Ethene and Chlorine by Rotational Spectroscopy: A Weak π-Type Complex. Chemistry 1995. [DOI: 10.1002/chem.19950010107] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Bloemink HI, Cooke SA, Hinds K, Legon AC, Thorn JC. The bπ.aσ complex C2H2⋯Cl2characterised by rotational spectroscopy as an intermediate in a reactive mixture of ethyne and chlorine. ACTA ACUST UNITED AC 1995. [DOI: 10.1039/ft9959101891] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Bloemink H, Hinds K, Legon A, Thorn J. Properties of the intermediate ethyne…Cl2 from its rotational spectrum and some generalisations for a series B…Cl2. Chem Phys Lett 1994. [DOI: 10.1016/0009-2614(94)00439-0] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Legon AC, Warner HE. Isolation of stable intermediates in reactive gas mixtures: Rotational spectrum of H3P...Cl2in a pulsed jet. J Chem Phys 1993. [DOI: 10.1063/1.464011] [Citation(s) in RCA: 41] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Xu Y, Jäger W, Ozier I, Gerry MCL. Rotational spectrum, structure, and chlorine nuclear quadrupole coupling constants of the van der Waals complex Ar–Cl2. J Chem Phys 1993. [DOI: 10.1063/1.464050] [Citation(s) in RCA: 69] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Legon AC, Thorn JC. Identification and characterisation of the gas-phase complex HCN⋯Cl2by rotational spectroscopy. ACTA ACUST UNITED AC 1993. [DOI: 10.1039/ft9938904157] [Citation(s) in RCA: 28] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Sims IR, Gruebele M, Potter ED, Zewail AH. Femtosecond real‐time probing of reactions. VIII. The bimolecular reaction Br+I2. J Chem Phys 1992. [DOI: 10.1063/1.463917] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Tao F, Klemperer W. The van der Waals potential‐energy surfaces and the structures of ArClF and ArCl2. J Chem Phys 1992. [DOI: 10.1063/1.463589] [Citation(s) in RCA: 75] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Gruebele M, Sims IR, Potter ED, Zewail AH. Femtosecond probing of bimolecular reactions: The collision complex. J Chem Phys 1991. [DOI: 10.1063/1.461349] [Citation(s) in RCA: 29] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Yaron D, Peterson KI, Zolandz D, Klemperer W, Lovas FJ, Suenram RD. Water hydrogen bonding: The structure of the water–carbon monoxide complex. J Chem Phys 1990. [DOI: 10.1063/1.458250] [Citation(s) in RCA: 107] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Andrews L, Hunt RD. Infrared spectra of ClF, Cl2, and Cl complexes with HCl in solid argon. J Chem Phys 1988. [DOI: 10.1063/1.454921] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Rendell APL, Bacskay GB, Hush NS. An ab initio quantum chemical study of the hydrogen‐ and ‘‘anti’’‐hydrogen‐bonded HF/ClF and HF/Cl2 dimers. J Chem Phys 1987. [DOI: 10.1063/1.453601] [Citation(s) in RCA: 24] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Buckingham AD, Fowler PW, Stone AJ. Electrostatic predictions of shapes and properties of Van der Waals molecules. INT REV PHYS CHEM 1986. [DOI: 10.1080/01442358609353370] [Citation(s) in RCA: 71] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Ellenberger MR, Richtsmeier SC, Dixon DA. Reactive scattering of van der Waals molecules. Mol Phys 1985. [DOI: 10.1080/00268978500102311] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Rendell AP, Bacskay GB, Hush NS. The validity of electrostatic predictions of the shapes of van der Waals dimers. Chem Phys Lett 1985. [DOI: 10.1016/0009-2614(85)80272-4] [Citation(s) in RCA: 71] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Baiocchi FA, Reiher W, Klemperer W. Comments on ‘‘Do electrostatic interactions predict structures of van der Waals molecules?’’. J Chem Phys 1983. [DOI: 10.1063/1.445722] [Citation(s) in RCA: 71] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Mizugai Y, Kuze H, Jones H, Takami M. Diode-laser spectroscopy of supersonic free jets. ACTA ACUST UNITED AC 1983. [DOI: 10.1007/bf00688775] [Citation(s) in RCA: 55] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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