The quasiperiodic route to chaos in a model of the peroxidase–oxidase reaction

Periodicity, mixed-mode oscillations, and multiple timescales in a phosphoinositide-Rho GTPase network

While rhythmic contractile behavior is commonly observed at the cellular cortex, the primary focus has been on excitable or periodic events described by simple activator-delayed inhibitor mechanisms. We show that Rho GTPase activation in nocodazole-treated mitotic cells exhibits both simple oscillations and complex mixed-mode oscillations. Rho oscillations with a 20- to 30-s period are regulated by phosphatidylinositol (3,4,5)-trisphosphate (PIP3) via an activator-delayed inhibitor mechanism, while a slow reaction with period of minutes is regulated by phosphatidylinositol 4-kinase via an activator-substrate depletion mechanism. Conversion from simple to complex oscillations can be induced by modulating PIP3 metabolism or altering membrane contact site protein E-Syt1. PTEN depletion results in a period-doubling intermediate, which, like mixed-mode oscillations, is an intermediate state toward chaos. In sum, this system operates at the edge of chaos. Small changes in phosphoinositide metabolism can confer cells with the flexibility to rapidly enter ordered states with different periodicities.

Complex dynamics in an unexplored simple model of the peroxidase-oxidase reaction

A previously overlooked version of the so-called Olsen model of the peroxidase-oxidase reaction has been studied numerically using 2D isospike stability and maximum Lyapunov exponent diagrams and reveals a rich variety of dynamic behaviors not observed before. The model has a complex bifurcation structure involving mixed-mode and bursting oscillations as well as quasiperiodic and chaotic dynamics. In addition, multiple periodic and non-periodic attractors coexist for the same parameters. For some parameter values, the model also reveals formation of mosaic patterns of complex dynamic states. The complex dynamic behaviors exhibited by this model are compared to those of another version of the same model, which has been studied in more detail. The two models show similarities, but also notable differences between them, e.g., the organization of mixed-mode oscillations in parameter space and the relative abundance of quasiperiodic and chaotic oscillations. In both models, domains with chaotic dynamics contain apparently disorganized subdomains of periodic attractors with dinoflagellate-like structures, while the domains with mainly quasiperiodic behavior contain subdomains with periodic attractors organized as regular filamentous structures. These periodic attractors seem to be organized according to Stern-Brocot arithmetics. Finally, it appears that toroidal (quasiperiodic) attractors develop into first wrinkled and then fractal tori before they break down to chaotic attractors.

Complexity of a peroxidase-oxidase reaction model

The peroxidase-oxidase oscillating reaction was the first (bio)chemical reaction to show chaotic behaviour. The reaction is rich in bifurcation scenarios, from period-doubling to peak-adding mixed mode oscillations. Here, we study a state-of-the-art model of the peroxidase-oxidase reaction. Using the model, we report systematic numerical experiments exploring the impact of changing the enzyme concentration on the dynamics of the reaction. Specifically, we report high-resolution phase diagrams predicting and describing how the reaction unfolds over a quite extended range of enzyme concentrations. Surprisingly, such diagrams reveal that the enzyme concentration has a huge impact on the reaction evolution. The highly intricate dynamical behaviours predicted here are difficult to establish theoretically due to the total absence of an adequate framework to solve nonlinearly coupled differential equations. But such behaviours may be validated experimentally.

Chaos in the peroxidase-oxidase oscillator

The peroxidase-oxidase (PO) reaction involves the oxidation of reduced nicotinamide adenine dinucleotide by molecular oxygen. When both reactants are supplied continuously to a reaction mixture containing the enzyme and a phenolic compound, the reaction will exhibit oscillatory behavior. In fact, the reaction exhibits a zoo of dynamical behaviors ranging from simple periodic oscillations to period-doubled and mixed mode oscillations to quasiperiodicity and chaos. The routes to chaos involve period-doubling, period-adding, and torus bifurcations. The dynamic behaviors in the experimental system can be simulated by detailed semiquantitative models. Previous models of the reaction have omitted the phenolic compound from the reaction scheme. In the current paper, we present new experimental results with the oscillating PO reaction that add to our understanding of its rich dynamics, and we describe a new variant of a previous model, which includes the chemistry of the phenol in the reaction mechanism. This new model can simulate most of the experimental behaviors of the experimental system including the new observations presented here. For example, the model reproduces the two main routes to chaos observed in experiments: (i) a period-doubling scenario, which takes place at low pH, and a period-adding scenario involving mixed mode oscillations (MMOs), which occurs at high pH. Our simulations suggest alternative explanations for the pH-sensitivity of the dynamics. We show that the MMO domains are separated by narrow parameter regions of chaotic behavior or quasiperiodicity. These regions start as tongues of secondary quasiperiodicity and develop into strange attractors through torus breakdown.

Quasiperiodic behavior in the electrodeposition of Cu/Sn multilayers: extraction of activation energies and wavelet analysis

The oscillatory electro-deposition of Cu/Sn in the presence of a surfactant shows quasiperiodic behavior, which is described by the coupling between a mainly activation and a mainly diffusion-controlled processes.

Nonchaos-Mediated Mixed-Mode Oscillations in an Enzyme Reaction System

We report numerical evidence of a new type of wide-ranging organization of mixed-mode oscillations (MMOs) in a model of the peroxidase-oxidase reaction, in the control parameter plane defined by the supply of the reactant NADH and the pH of the medium. In classic MMOs, the intervals of distinct periodic oscillations are always separated from each other by windows of chaos. In contrast, in the new unfolding, such windows of chaos do not exist. Chaos-mediated and nonchaos-mediated MMO phases are separated by a continuous transition boundary in the control parameter plane. In addition, for low pH values, we find an exceptionally wide and intricate mosaic of MMO phases that is described by a detailed phase diagram.

Mixed-mode oscillations in a homogeneous pH-oscillatory chemical reaction system

We examine experimentally a chemical system in a flow-through stirred reactor, which is known to provide large-amplitude oscillations of the pH value. By systematic variation of the flow rate, we find that the system displays hysteresis between a steady state and oscillations, and more interestingly, a transition to chaos involving mixed-mode oscillations. The basic pattern of the measured pH in the mixed-mode regime includes a large-scale peak followed by a series of oscillations on a much smaller scale, which are usually highly irregular and of variable duration. The bifurcation diagram shows that chaos sets in via a period-doubling route observed on the large-amplitude scale, but simultaneously small-amplitude oscillations are involved. Beyond the apparent accumulation of period doubling bifurcations, a mixed-mode regime with irregular oscillations on both scales is observed, occasionally interrupted by windows of periodicity. As the flow rate is further increased, chaos turns into quasiperiodicity and later to a simple small-amplitude periodic regime. Dynamics of selected typical regimes were examined with the tools of nonlinear time-series analysis, which include phase space reconstruction of an attractor and calculation of the maximal Lyapunov exponent. The analysis points to deterministic chaos, which appears via a period doubling route from below and via a route involving quasiperiodicity from above, when the flow rate is varied.

Origin of bursting oscillations in an enzyme model reaction system

The transition from simple periodic to bursting behavior in a three-dimensional model system of the hemin-hydrogen-peroxide-sulfite pH oscillator is investigated. A two-parameter continuation in the flow rate and the hemin decay rate is performed to identify the region of complex dynamics. The bursting oscillations emerge subsequent to a cascade of period-doubling bifurcations and the formation of a chaotic attractor in parameter space where they are found to be organized in periodic-chaotic progressions. This suggests that the bursting oscillations are not associated with phase-locked states on a two-torus. The bursting behavior is classified by a bifurcation analysis using the intrinsic slow-fast structure of the dynamics. In particular, we find a slowly varying quasispecies (i.e., a linear combination of two species) which acts as an "internal" or quasistatic bifurcation parameter for the remaining two-dimensional subsystem. A systematic two-parameter continuation in the internal parameter and one of the external bifurcation parameters reveals a transition in the bursting mechanism from sub-Hopf/fold-cycle to fold/sub-Hopf type. In addition, the slow-fast analysis provides an explanation for the origin of quasiperiodic behavior in the hemin system, even though the underlying mechanism might be of more general importance.

Complex oscillations in a simple model for the Briggs-Rauscher reaction

Complex oscillations in a simple model of the Briggs-Rauscher reaction mechanism in a continuously stirred tank reactor proposed by Kim et al. [J. Chem. Phys. 117, 2710 (2002)] are investigated numerically. The k(0)-[CH(2)(COOH)(2)](0) phase diagram is constructed first where k(0) is the flow rate and [...](0) is the input concentration. Within the region surrounded by the Hopf bifurcation curve, we find complex oscillation regions which are again separated from the regular oscillation region by the secondary Hopf bifurcation curves. Mixed mode oscillations with an incomplete Farey sequence, periodic-chaotic (or nonperiodic) sequence, and various types of burst oscillations are observed in complex oscillation regions. Also, chaotic burst oscillations, which are due to the transition from one kind of burst to another kind, are reported.

Interface-mediated oscillatory phenomena

Oscillatory transport processes which occur in the far from equilibrium region have assumed great significance from the viewpoint of science of complexity. Oscillatory phenomena in the chemical reaction systems have been subjected to intense investigations both from theoretical and experimental angles. In the present review an effort has been made to bring transport processes other than conventional chemical reactions into focus: transport processes mediated by solid-liquid and liquid-liquid interfaces have been discussed. Transport through membranes including liquid membranes, liquid-liquid interfaces and the recently reported hydrodynamic oscillator have been covered. Applications of these systems in areas such as fabrication of sensors, phase transfer catalysis and, of course, the obvious biological action, e.g. excitation of biomembranes and tissues, have been reviewed. Theoretical frameworks proposed to rationalize the phenomena have also been critically reviewed.

Multiple time scale analysis of two models for the peroxidase-oxidase reaction

A multiple time scale analysis of two four-variable models of the peroxidase-oxidase reaction, the DOP, and the Olsen model, is carried out. It is shown that autonomous limit cycle oscillations are exhibited by the fast subsets of these two models, but only in certain regions of parameter space, confirming the prior suggestion that the slow variable (NADH) is not essential for oscillatory behavior. However, it is found that the slow variable is essential for oscillatory behavior over other ranges of parameter values, and is always essential for complex oscillatory and chaotic behavior. This latter conclusion is based on a study involving driving the fast subset with a sinusoidally varying (NADH). This study suggests the level of coupling between fast and slow variables of an autonomous system necessary to cause the chaos observed in the DOP model. Further study of the driven system allows for the identification of a natural period of the nonoscillatory but bistable fast subsystem and a set of rules for applying a parametric driving in such a way as to generate a more complete Farey sequence from a truncated Farey sequence. These conclusions are used to compare the very similar DOP and Olsen models, which, nevertheless, exhibit quite different Farey sequences and routes to chaos. (c) 1995 American Institute of Physics.

Chaos in intracellular Ca2+ oscillations in a new model for non-excitable cells

A new model for intracellular Ca2+ oscillations is presented. The new model reinterprets two previous models, the ICC and CICR mechanisms, and incorporates the bell-shaped dependence of Ca2+ release on cytosolic [Ca2+]. Complex oscillations and chaos are found with this new model, confirming experimental observations of complex oscillations. A rich bifurcation sequence is found for the model as the stimulation due to agonist (R) is varied, including a period doubling route to chaos and a period-adding sequence of mixed-mode states.