Photochemistry of adsorbed molecules. XII. Photoinduced ion–molecule reactions at a metal surface for CH3X/RCl/Ag(111) (X=Br, I)

Reaction Cycles of Halogen Species in the Immune Defense: Implications for Human Health and Diseases and the Pathology and Treatment of COVID-19

There is no vaccine or specific antiviral treatment for COVID-19, which is causing a global pandemic. One current focus is drug repurposing research, but those drugs have limited therapeutic efficacies and known adverse effects. The pathology of COVID-19 is essentially unknown. Without this understanding, it is challenging to discover a successful treatment to be approved for clinical use. This paper addresses several key biological processes of reactive oxygen, halogen and nitrogen species (ROS, RHS and RNS) that play crucial physiological roles in organisms from plants to humans. These include why superoxide dismutases, the enzymes to catalyze the formation of H₂O₂, are required for protecting ROS-induced injury in cell metabolism, why the amount of ROS/RNS produced by ionizing radiation at clinically relevant doses is ~1000 fold lower than the endogenous ROS/RNS level routinely produced in the cell and why a low level of endogenous RHS plays a crucial role in phagocytosis for immune defense. Herein we propose a plausible amplification mechanism in immune defense: ozone-depleting-like halogen cyclic reactions enhancing RHS effects are responsible for all the mentioned physiological functions, which are activated by H₂O₂ and deactivated by NO signaling molecule. Our results show that the reaction cycles can be repeated thousands of times and amplify the RHS pathogen-killing (defense) effects by 100,000 fold in phagocytosis, resembling the cyclic ozone-depleting reactions in the stratosphere. It is unraveled that H₂O₂ is a required protective signaling molecule (angel) in the defense system for human health and its dysfunction can cause many diseases or conditions such as autoimmune disorders, aging and cancer. We also identify a class of potent drugs for effective treatment of invading pathogens such as HIV and SARS-CoV-2 (COVID-19), cancer and other diseases, and provide a molecular mechanism of action of the drugs or candidates.

Excitation and quenching mechanisms in the near-UV photodissociation of CH3Br and CH3Cl adsorbed on D2O or CH3OH on Cu(110)

Photochemical processes for CH3X (X = Cl, Br, I) adsorbed on top of thin films of D2O or CH3OH on a Cu(110) substrate is studied by time-of-flight mass spectrometry for a range of UV wavelengths (351-193 nm). Photodissociation via dissociative electron attachment by photoelectrons and by neutral photodissociation is identified and quantified based on the observed dynamics of the desorbing CH3 fragments. Photoelectron-driven dissociation of CH3X is found to be a maximum for monolayer quantities of the D2O or CH3OH on Cu(110), but with differing kinetic energy release on the two substrates. The dynamics of CH3Br and CH3Cl photodissociation qualitatively differ on CH3OH/Cu(110) as compared to D2O/Cu(110), which is ascribed to differing molecular structures for these systems. Evidence is presented for an efficient inter-molecular quenching mechanism for neutral photoexcitation of CH3Cl and CH3Br on the CH3OH/Cu(110) substrate.

Photochemistry of Vinyl Chloride Physisorbed on Ag(111) through Molecular Anion Formation Induced by Substrate Electron Attachment

Pulsed 266 and 355 nm ultraviolet laser irradiation of monolayer vinyl chloride physisorbed on Ag(111) results in molecular dissociation leading to C2H3 and Cl, much of which is adsorbed to the surface. On the basis of observations made on dissociation dependences on chlorine isotope and photon energy, it is deduced that upon excitation vinyl chloride forms a transient negative ion through a substrate mediated, vertical electron attachment mechanism. The anion either dissociates or relaxes through energy transfer to the neutral state causing the neutral molecule to desorb. The threshold for vertical attachment of substrate electron is estimated to be 0.8 eV below the vacuum level, in agreement with the experimentally observed wavelength dependence in photoinduced dissociation. Chemisorbed Cl on the Ag(111) surface inhibits the photodissociation process by increasing the substrate work function and consequently the energy threshold for electron vertical attachment. Upon heating the Ag(111) surface, adsorbed vinyl combines to produce 1,3-butadiene in a first order, diffusion limited, process with an activation energy of 10.4 kcal/mol.

Surface aligned ion-molecule reaction: direct observation of initial and final ion momenta

An ion-molecule reaction has been studied by measuring the momentum of both the reactant and the product ions. This is carried out in an ordered molecular film of CD3I where electron stimulated desorption causes the reaction CD+3+ CD3I--> C2D+5+DI. The close similarity of the normal momentum of CD+3 and C2D+5 indicates that a sticky collision occurs in which, to within 10%, the momentum of the reactant ion is transferred to the momentum of the product ion. The measurement represents the first use of molecularly aligned species to study momentum effects in an ion-molecule reaction.