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Babashpour S, Atabaki H. Unravelling the Origin of the Linear Structures Distortions of the Acetylene Isoelectronic Compounds (Disilyne, Digermyne, and Distannyne). RUSSIAN JOURNAL OF PHYSICAL CHEMISTRY A 2021. [DOI: 10.1134/s0036024421030055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Kumagai Y, Odagiri T, Nakano M, Suzuki IH, Hosaka K, Kitajima M, Kouchi N. Formation of hot hydrogen atoms from superexcited states of acetylene. J Chem Phys 2018; 149:244302. [PMID: 30599704 DOI: 10.1063/1.5058101] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The cross sections for the formation of the H(2p) and H(2s) atoms, σ 2p and σ 2s , respectively, in photoexcitation of C2H2 were obtained in an absolute scale for studying formation and decay of superexcited states in the extreme ultraviolet range. Several superexcited states of C2H2 including multiply excited states were found in the curve of the σ 2p cross sections as a function of the incident photon energy. The same states seem to contribute to the variation in the σ 2s cross sections as well, which can be ascribed to the non-adiabatic transitions between the 2p and 2s channels. The Σ/Π symmetry-resolved cross sections for the H(2s) atom formation, σ 2 s Σ and σ 2 s Π , were also obtained on an absolute scale. The coupling between the Σ u + 1 and 1Π u states was found to be small.
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Affiliation(s)
- Yoshiaki Kumagai
- Department of Chemistry, Tokyo Institute of Technology, Tokyo 152-8551, Japan
| | - Takeshi Odagiri
- Department of Materials and Life Sciences, Sophia University, Tokyo 102-8554, Japan
| | - Motoyoshi Nakano
- Department of Chemistry, Tokyo Institute of Technology, Tokyo 152-8551, Japan
| | - Isao H Suzuki
- Department of Materials and Life Sciences, Sophia University, Tokyo 102-8554, Japan
| | - Kouichi Hosaka
- Department of Chemistry, Tokyo Institute of Technology, Tokyo 152-8551, Japan
| | - Masashi Kitajima
- Department of Chemistry, Tokyo Institute of Technology, Tokyo 152-8551, Japan
| | - Noriyuki Kouchi
- Department of Chemistry, Tokyo Institute of Technology, Tokyo 152-8551, Japan
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Xu S, Guo D, Ma X, Zhu X, Feng W, Yan S, Zhao D, Gao Y, Zhang S, Ren X, Zhao Y, Xu Z, Dorn A, Cederbaum LS, Kryzhevoi NV. Damaging Intermolecular Energy and Proton Transfer Processes in Alpha-Particle-Irradiated Hydrogen-Bonded Systems. Angew Chem Int Ed Engl 2018; 57:17023-17027. [PMID: 30417968 DOI: 10.1002/anie.201808898] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2018] [Revised: 10/12/2018] [Indexed: 11/11/2022]
Abstract
Although the biological hazard of alpha-particle radiation is well-recognized, the molecular mechanisms of biodamage are still far from being understood. Irreparable lesions in biomolecules may not only have mechanical origin but also appear due to various electronic and nuclear relaxation processes of ionized states produced by an alpha-particle impact. Two such processes were identified in the present study by considering an acetylene dimer, a biologically relevant system possessing an intermolecular hydrogen bond. The first process is the already well-established intermolecular Coulombic decay of inner-valence-ionized states. The other is a novel relaxation mechanism of dicationic states involving intermolecular proton transfer. Both processes are very fast and trigger Coulomb explosion of the dimer due to creation of charge-separated states. These processes are general and predicted to occur also in alpha-particle-irradiated nucleobase pairs in DNA molecules.
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Affiliation(s)
- Shenyue Xu
- Institute of Modern Physics, Chinese Academy of Sciences, Nanchang Road 509, Lanzhou, 730000, China.,School of Science, Xi'an Jiaotong University, Xianning West Road 28, Xi'an, 710049, China
| | - Dalong Guo
- Institute of Modern Physics, Chinese Academy of Sciences, Nanchang Road 509, Lanzhou, 730000, China
| | - Xinwen Ma
- Institute of Modern Physics, Chinese Academy of Sciences, Nanchang Road 509, Lanzhou, 730000, China
| | - Xiaolong Zhu
- Institute of Modern Physics, Chinese Academy of Sciences, Nanchang Road 509, Lanzhou, 730000, China
| | - Wentian Feng
- Institute of Modern Physics, Chinese Academy of Sciences, Nanchang Road 509, Lanzhou, 730000, China
| | - Shuncheng Yan
- Institute of Modern Physics, Chinese Academy of Sciences, Nanchang Road 509, Lanzhou, 730000, China
| | - Dongmei Zhao
- Institute of Modern Physics, Chinese Academy of Sciences, Nanchang Road 509, Lanzhou, 730000, China
| | - Yong Gao
- Institute of Modern Physics, Chinese Academy of Sciences, Nanchang Road 509, Lanzhou, 730000, China
| | - Shaofeng Zhang
- Institute of Modern Physics, Chinese Academy of Sciences, Nanchang Road 509, Lanzhou, 730000, China
| | - Xueguang Ren
- School of Science, Xi'an Jiaotong University, Xianning West Road 28, Xi'an, 710049, China.,Max-Planck-Institut für Kernphysik, Saupfercheckweg 1, 69117, Heidelberg, Germany
| | - Yongtao Zhao
- School of Science, Xi'an Jiaotong University, Xianning West Road 28, Xi'an, 710049, China
| | - Zhongfeng Xu
- School of Science, Xi'an Jiaotong University, Xianning West Road 28, Xi'an, 710049, China
| | - Alexander Dorn
- Max-Planck-Institut für Kernphysik, Saupfercheckweg 1, 69117, Heidelberg, Germany
| | - Lorenz S Cederbaum
- Theoretische Chemie, Physikalisch-Chemisches Institut, Universität Heidelberg, Im Neuenheimer Feld 229, 69120, Heidelberg, Germany
| | - Nikolai V Kryzhevoi
- Theoretische Chemie, Physikalisch-Chemisches Institut, Universität Heidelberg, Im Neuenheimer Feld 229, 69120, Heidelberg, Germany
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Xu S, Guo D, Ma X, Zhu X, Feng W, Yan S, Zhao D, Gao Y, Zhang S, Ren X, Zhao Y, Xu Z, Dorn A, Cederbaum LS, Kryzhevoi NV. Damaging Intermolecular Energy and Proton Transfer Processes in Alpha‐Particle‐Irradiated Hydrogen‐Bonded Systems. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201808898] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Shenyue Xu
- Institute of Modern Physics Chinese Academy of Sciences Nanchang Road 509 Lanzhou 730000 China
- School of Science Xi'an Jiaotong University Xianning West Road 28 Xi'an 710049 China
| | - Dalong Guo
- Institute of Modern Physics Chinese Academy of Sciences Nanchang Road 509 Lanzhou 730000 China
| | - Xinwen Ma
- Institute of Modern Physics Chinese Academy of Sciences Nanchang Road 509 Lanzhou 730000 China
| | - Xiaolong Zhu
- Institute of Modern Physics Chinese Academy of Sciences Nanchang Road 509 Lanzhou 730000 China
| | - Wentian Feng
- Institute of Modern Physics Chinese Academy of Sciences Nanchang Road 509 Lanzhou 730000 China
| | - Shuncheng Yan
- Institute of Modern Physics Chinese Academy of Sciences Nanchang Road 509 Lanzhou 730000 China
| | - Dongmei Zhao
- Institute of Modern Physics Chinese Academy of Sciences Nanchang Road 509 Lanzhou 730000 China
| | - Yong Gao
- Institute of Modern Physics Chinese Academy of Sciences Nanchang Road 509 Lanzhou 730000 China
| | - Shaofeng Zhang
- Institute of Modern Physics Chinese Academy of Sciences Nanchang Road 509 Lanzhou 730000 China
| | - Xueguang Ren
- School of Science Xi'an Jiaotong University Xianning West Road 28 Xi'an 710049 China
- Max-Planck-Institut für Kernphysik Saupfercheckweg 1 69117 Heidelberg Germany
| | - Yongtao Zhao
- School of Science Xi'an Jiaotong University Xianning West Road 28 Xi'an 710049 China
| | - Zhongfeng Xu
- School of Science Xi'an Jiaotong University Xianning West Road 28 Xi'an 710049 China
| | - Alexander Dorn
- Max-Planck-Institut für Kernphysik Saupfercheckweg 1 69117 Heidelberg Germany
| | - Lorenz S. Cederbaum
- Theoretische Chemie Physikalisch-Chemisches Institut Universität Heidelberg Im Neuenheimer Feld 229 69120 Heidelberg Germany
| | - Nikolai V. Kryzhevoi
- Theoretische Chemie Physikalisch-Chemisches Institut Universität Heidelberg Im Neuenheimer Feld 229 69120 Heidelberg Germany
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Search of truncation of ( N−1) electron basis containing full connected triple excitations in computing main and satellite ionization potentials via Fock-space coupled cluster approach. J Comput Chem 2013; 34:1291-310. [DOI: 10.1002/jcc.23255] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2012] [Revised: 12/17/2012] [Accepted: 01/21/2013] [Indexed: 01/23/2023]
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Bawagan ADO, Davidson ER. Understanding Electron Correlation: Recent Progress in Molecular Synchrotron Photoelectron Spectroscopy. ADVANCES IN CHEMICAL PHYSICS 2007. [DOI: 10.1002/9780470141694.ch3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/19/2023]
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Pitarch-Ruiz J, Sánchez-Marín J, Maynau D. Vertical spectrum of the C2H2+ system. An open shell (SC)2-CAS-SDCI study. J Comput Chem 2003; 24:609-17. [PMID: 12632475 DOI: 10.1002/jcc.10183] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
The open shell (SC)(2)-CAS-SDCI method along with a basis set of atomic natural orbitals (ANO) has been applied for calculating the main ionization potentials of acetylene, as well as the manifold of excited states of the different symmetries up to 32 eV. In this method, the single and double excitations of a CAS space are generated and the corresponding CI matrix is corrected by means of the (SC)(2) procedure that cancels the size-extensivity error and adds some high order contributions. The mean absolute error for the outer-valence X (2)Pi(u)(1pi(u) (-1)), A (2)Sigma(g) (+)(3sigma(g) (-1)), and B (2)Sigma(u) (+)(2sigma(u) (-1)) states, and the inner-valence C (2)Sigma(g) (+)(2sigma(g) (-1)) state is 0.1 eV. The excited states of C(2)H(2) (+) corresponding to the Sigma(g) (+), Sigma(u) (+), Pi(g), Pi(u), Delta(g), and Delta(u) symmetries are reported and their composition is discussed. The results are thoroughly compared to the best available multireference CI calculations. Recent multichannel CI results by Wells and Lucchese [J Chem Phys 1999, 110, 6365] have been used also as a guide for the discussion of the results. Discrepancies in the description of many multiconfigurational states by means of the (SC)(2)-CAS-SDCI wave function as compared to previous large MR-CI calculations are significant and are, consequently, remarked on. A large mixing of the 3sigma(g) (-1) and 2sigma(g) (-1) processes is found in the A (2)Sigma(g) (+) and C (2)Sigma(g) (+) states, provided that the basis set is augmented with Rydberg functions.
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Affiliation(s)
- José Pitarch-Ruiz
- Departament de Química-Física, Institut de Ciència Molecular, Facultat de Ciències Químiques, Universitat de València, Dr. Moliner, 50, E-46100 Burjassot (València), Spain
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Pitarch-Ruiz J, Sánchez-Marín J, Maynau D. Reducing CAS-SDCI space. Using selected spaces in configuration interaction calculations in an efficient way. J Comput Chem 2002; 23:1157-65. [PMID: 12116385 DOI: 10.1002/jcc.10092] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
A new method is presented, which allows an important reduction of the size of some Configuration Interaction (CI) matrices. Starting from a Complete Active Space (CAS), the numerous configurations that have a small weight in the CAS wave function are eliminated. When excited configurations (e.g., singly and doubly excited) are added to the reference space, the resulting MR-SDCI space is reduced in the same proportion as compared with the full CAS-SDCI. A set of active orbitals is chosen, but some selection of the most relevant excitations is performed because not all the possible excitations act as SDCI generators. Thanks to a new addressing technique, the computational time is drastically reduced, because the new addressing of the selected active space is as efficient as the addressing of the CAS. The presentation of the method is followed by two test calculations on the N(2) and HCCH molecules. For the N(2) the FCI results are taken as a benchmark reference. The outer valence ionization potentials of HCCH are compared to the experimental values. Both examples allow to test the accuracy of the MR-SDCI compared to that of the corresponding CAS-SDCI, despite the noticeable reduction of the CI space. The algorithm is suitable for the dressing techniques that allow for the correction of the size-extensivity error. The corrected results are also shown and discussed.
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Affiliation(s)
- José Pitarch-Ruiz
- Departament de Química-Física, Institut de Ciència Molecular, Universitat de València, Dr. Moliner, 50 E-46100 Burjassot (València), Spain
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DAVIDSON ERNESTR. Biography. Mol Phys 2002. [DOI: 10.1080/00268970110075149] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Lin P, Lucchese RR. Multichannel Schwinger study of C 1s photoionization of acetylene. J Chem Phys 2000. [DOI: 10.1063/1.1131443] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Gaussian Type Orbitals basis sets for the calculation of continuum properties in molecules: the differential photoionization cross section of acetylene. Chem Phys 2000. [DOI: 10.1016/s0301-0104(99)00325-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Ghanty TK, Davidson ER. Theoretical Interpretation of the Photoelectron Spectra of Al3O2- and Al3O3-. J Phys Chem A 1999. [DOI: 10.1021/jp9925839] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Tapan K. Ghanty
- Department of Chemistry, Indiana University, 800 E. Kirkwood Ave., Bloomington, Indiana 47405-7102
| | - Ernest R. Davidson
- Department of Chemistry, Indiana University, 800 E. Kirkwood Ave., Bloomington, Indiana 47405-7102
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Ghanty TK, Davidson ER. Electronic Structure and Low-Lying Electronic States of Al3O and Al3O-: Photoelectron Spectrum of Al3O-. J Phys Chem A 1999. [DOI: 10.1021/jp984555g] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Tapan K. Ghanty
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405
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Ghanty TK, Davidson ER. Reassignment of the AlSi— photoelectron spectrum by ab initio configuration interaction calculations. Mol Phys 1999. [DOI: 10.1080/00268979909483009] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Perić M, Ostojić B, Engels B. Ab initio study of the electronic spectrum of C2H2+: Investigation of structure of spectra involving low-lying doublet electronic states. J Chem Phys 1998. [DOI: 10.1063/1.476901] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
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Bawagan A, Ghanty TK, Davidson E, Tan K. A peculiar excited electronic state of allene (1,2-propadiene). Chem Phys Lett 1998. [DOI: 10.1016/s0009-2614(98)00155-9] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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18
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Bawagan ADO, Desjardins SJ, Dailey R, Davidson ER. Correlation states of propene. J Chem Phys 1997. [DOI: 10.1063/1.474770] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Sabaye Moghaddam M, Bawagan A, Tan K, von Niessen W. Study of the electronic structure of pyridine by synchrotron photoelectron spectroscopy. Chem Phys 1996. [DOI: 10.1016/0301-0104(96)00051-1] [Citation(s) in RCA: 27] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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