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For: Urbič T, Vlachy V, Kalyuzhnyi YV, Southall NT, Dill KA. A two-dimensional model of water: Theory and computer simulations. J Chem Phys 2000. [DOI: 10.1063/1.480928] [Citation(s) in RCA: 60] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
Number Cited by Other Article(s)
1
Ogrin P, Urbic T. Thermodynamics perturbation theory for solvation of nonpolar solutes in rose model. Phys Rev E 2023;108:054135. [PMID: 38115497 DOI: 10.1103/physreve.108.054135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Accepted: 11/07/2023] [Indexed: 12/21/2023]
2
Ogrin P, Urbic T. Angle-dependent integral equation theory improves results of thermodynamics and structure of rose water model. J Chem Phys 2023;159:114505. [PMID: 37732557 PMCID: PMC10908565 DOI: 10.1063/5.0159438] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Accepted: 08/18/2023] [Indexed: 09/22/2023]  Open
3
Škvára J, Nezbeda I, Urbic T. Supercooled water in two dimensions: Structure and thermodynamics of the Mercedes-Benz model. J Mol Liq 2023;386:122445. [PMID: 37435361 PMCID: PMC10331298 DOI: 10.1016/j.molliq.2023.122445] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/13/2023]
4
Ogrin P, Urbic T. Hierarchy of anomalies in the simple rose model of water. J Mol Liq 2023;384:122274. [PMID: 39188752 PMCID: PMC11346774 DOI: 10.1016/j.molliq.2023.122274] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/28/2024]
5
Urbic T. Ben Naim's four-arm model with density anomaly: Theory and computer simulations. Phys Rev E 2023;108:014136. [PMID: 37583205 DOI: 10.1103/physreve.108.014136] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2023] [Accepted: 07/01/2023] [Indexed: 08/17/2023]
6
Ogrin P, Urbic T. Simple rose model of water in constant electric field. Phys Rev E 2023;107:054801. [PMID: 37329104 DOI: 10.1103/physreve.107.054801] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Accepted: 04/12/2023] [Indexed: 06/18/2023]
7
Urbic T. The electric field changes the anomalous properties of the Mercedes Benz water model. Phys Chem Chem Phys 2023;25:4987-4996. [PMID: 36722865 PMCID: PMC9906975 DOI: 10.1039/d2cp05670d] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
8
Ogrin P, Urbic T. Rose water in random porous media: Associative replica Ornstein-Zernike theory study. J Mol Liq 2022;368:120682. [PMID: 37731589 PMCID: PMC10508880 DOI: 10.1016/j.molliq.2022.120682] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
9
Pršlja P, Žibert T, Urbic T. Monte Carlo simulations of simple two dimensional water-alcohol mixtures. J Mol Liq 2022;368:120692. [PMID: 37731590 PMCID: PMC10508878 DOI: 10.1016/j.molliq.2022.120692] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
10
Computing dissipative particle dynamics interactions to render molecular structure and temperature-dependent properties of simple liquids. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.120539] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
11
Ogrin P, Urbic T. Liquid-vapour coexistence line and percolation line of rose water model. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.120531] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
12
Ogrin P, Urbic T, Fennell CJ. Statistical-mechanical liquid theories reproduce anomalous thermodynamic properties of explicit two-dimensional water models. Phys Rev E 2022;106:034115. [PMID: 36266898 PMCID: PMC10061499 DOI: 10.1103/physreve.106.034115] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2022] [Accepted: 08/12/2022] [Indexed: 11/07/2022]
13
Papez P, Urbic T. Simple two-dimensional models of alcohols. Phys Rev E 2022;105:054608. [PMID: 35706252 PMCID: PMC10040488 DOI: 10.1103/physreve.105.054608] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Accepted: 05/11/2022] [Indexed: 05/03/2023]
14
Ogrin P, Urbic T. Isothermal-isobaric algorithm to study the effects of rotational degrees of freedom-Benz water model. J Mol Liq 2022;349:118152. [PMID: 37727581 PMCID: PMC10508877 DOI: 10.1016/j.molliq.2021.118152] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
15
The effect of rotational degrees of freedom on solvation of nonpolar solute. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.116453] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
16
Podjed N, Urbic T. Two-dimensional core-softened model with water like properties: solvation of non-polar solute. MOLECULAR SIMULATION 2021. [DOI: 10.1080/08927022.2021.1932876] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
17
Thermodynamic perturbation theory for rotational degrees of freedom. Application to the Mercedes–Benz water model. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.115671] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
18
Ogrin P, Urbic T. Integral equation study of the effects of rotational degrees of freedom on properties of the Mercedes–Benz water model. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2020.114880] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
19
Urbic T. Two dimensional fluid with one site-site associating point. Monte Carlo, integral equation and thermodynamic perturbation theory study. J Mol Liq 2018;270:87-96. [PMID: 30546180 DOI: 10.1016/j.molliq.2017.12.111] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
20
Urbic T, Dill KA. Hierarchy of anomalies in the two-dimensional Mercedes-Benz model of water. Phys Rev E 2018;98:10.1103/physreve.98.032116. [PMID: 32025599 PMCID: PMC7001678 DOI: 10.1103/physreve.98.032116] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
21
Urbic T. Modelling water with simple Mercedes-Benz models. MOLECULAR SIMULATION 2018;45:279-294. [PMID: 31156291 PMCID: PMC6542362 DOI: 10.1080/08927022.2018.1502430] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2018] [Accepted: 07/14/2018] [Indexed: 10/28/2022]
22
Primorac T, Požar M, Sokolić F, Zoranić L, Urbic T. A Simple Two Dimensional Model of Methanol. J Mol Liq 2018;262:46-57. [PMID: 30364695 PMCID: PMC6197493 DOI: 10.1016/j.molliq.2018.04.055] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
23
Yagi T, Sato H. An Integral Equation Theory for Two Dimensional Molecular Fluids. CHEM LETT 2018. [DOI: 10.1246/cl.180344] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
24
Torres-Carbajal A, Castañeda-Priego R. Friction and diffusion of a nano-colloidal disk in a two-dimensional solvent with a liquid-liquid transition. Phys Chem Chem Phys 2018;20:6917-6928. [PMID: 29464245 DOI: 10.1039/c7cp08302e] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
25
Urbic T. Liquid part of the phase diagram and percolation line for two-dimensional Mercedes-Benz water. Phys Rev E 2018;96:032122. [PMID: 29346988 DOI: 10.1103/physreve.96.032122] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2017] [Indexed: 11/07/2022]
26
Gladovic M, Bren U, Urbic T. Thermodynamic properties of water in confined environments: a Monte Carlo study. Mol Phys 2017. [DOI: 10.1080/00268976.2017.1409911] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
27
Urbic T, Najem S, Dias CL. Thermodynamic properties of amyloid fibrils in equilibrium. Biophys Chem 2017;231:155-160. [PMID: 28318905 PMCID: PMC5589490 DOI: 10.1016/j.bpc.2017.03.001] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2016] [Revised: 02/01/2017] [Accepted: 03/02/2017] [Indexed: 11/19/2022]
28
Brini E, Fennell CJ, Fernandez-Serra M, Hribar-Lee B, Lukšič M, Dill KA. How Water's Properties Are Encoded in Its Molecular Structure and Energies. Chem Rev 2017;117:12385-12414. [PMID: 28949513 PMCID: PMC5639468 DOI: 10.1021/acs.chemrev.7b00259] [Citation(s) in RCA: 199] [Impact Index Per Article: 28.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2017] [Indexed: 11/29/2022]
29
Integral equation and thermodynamic perturbation theory for a two-dimensional model of chain-forming fluid. J Mol Liq 2017;238:129-135. [PMID: 28729752 DOI: 10.1016/j.molliq.2017.04.095] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
30
Urbic T. Integral equation and thermodynamic perturbation theory for a two-dimensional model of dimerising fluid. J Mol Liq 2017;228:32-37. [PMID: 28529396 DOI: 10.1016/j.molliq.2016.09.061] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
31
Urbic T, Mohoric T. Effects of translational and rotational degrees of freedom on properties of the Mercedes–Benz water model. J Chem Phys 2017. [DOI: 10.1063/1.4977214] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
32
Williamson CH, Hall JR, Fennell CJ. Two-dimensional molecular simulations using rose potentials. J Mol Liq 2017. [DOI: 10.1016/j.molliq.2016.10.016] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
33
Urbic T. Properties of the two-dimensional heterogeneous Lennard-Jones dimers: An integral equation study. J Chem Phys 2016;145:194503. [PMID: 27875894 PMCID: PMC5116027 DOI: 10.1063/1.4967807] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2016] [Accepted: 11/02/2016] [Indexed: 11/14/2022]  Open
34
Torres-Carbajal A, Castañeda-Priego R. Characterisation of the thermodynamics, structure and dynamics of a water-like model in 2- and 3-dimensions. Phys Chem Chem Phys 2016;18:17335-40. [PMID: 27232761 DOI: 10.1039/c6cp01565d] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
35
Fennell CJ, Gezelter JD. Computational Free Energy Studies of a New Ice Polymorph Which Exhibits Greater Stability than Ice Ih. J Chem Theory Comput 2015;1:662-7. [PMID: 26641688 DOI: 10.1021/ct050005s] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
36
Banerjee S, Singh RS, Bagchi B. Orientational order as the origin of the long-range hydrophobic effect. J Chem Phys 2015;142:134505. [PMID: 25854251 DOI: 10.1063/1.4916744] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
37
Kurtjak M, Urbic T. A simple water model in the presence of inert Lennard-Jones obstacles II: the hydrophobic effect. Mol Phys 2014. [DOI: 10.1080/00268976.2014.973919] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
38
Urbic T, Dias CL. Properties of the Lennard-Jones dimeric fluid in two dimensions: an integral equation study. J Chem Phys 2014;140:094703. [PMID: 24606372 PMCID: PMC3977749 DOI: 10.1063/1.4867289] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2014] [Accepted: 02/19/2014] [Indexed: 12/21/2022]  Open
39
Mohorič T, Urbic T, Hribar-Lee B. The application of the integral equation theory to study the hydrophobic interaction. J Chem Phys 2014;140:024502. [PMID: 24437891 PMCID: PMC3970826 DOI: 10.1063/1.4858398] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2013] [Accepted: 12/10/2013] [Indexed: 11/14/2022]  Open
40
Kurtjak M, Urbic T. Water in the presence of inert Lennard-Jones obstacles. Mol Phys 2013. [DOI: 10.1080/00268976.2013.836608] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
41
Mohoric T, Urbic T, Hribar-Lee B. The application of the thermodynamic perturbation theory to study the hydrophobic hydration. J Chem Phys 2013;139:024101. [PMID: 23862923 DOI: 10.1063/1.4812744] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
42
Cartwright JHE, Piro O, Sánchez PA, Sintes T. Ice polyamorphism in the minimal Mercedes-Benz model of water. J Chem Phys 2012;137:244503. [PMID: 23277941 DOI: 10.1063/1.4772202] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
43
Lukšič M, Urbic T, Hribar-Lee B, Dill KA. Simple model of hydrophobic hydration. J Phys Chem B 2012;116:6177-86. [PMID: 22564051 DOI: 10.1021/jp300743a] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
44
Urbic T, Holovko MF. Mercedes-Benz water molecules near hydrophobic wall: integral equation theories vs Monte Carlo simulations. J Chem Phys 2011;135:134706. [PMID: 21992334 DOI: 10.1063/1.3644934] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
45
Urbic T, Dill KA. A statistical mechanical theory for a two-dimensional model of water. J Chem Phys 2010;132:224507. [PMID: 20550408 DOI: 10.1063/1.3454193] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
46
Bizjak A, Urbic T, Vlachy V, Dill KA. Theory for the three-dimensional Mercedes-Benz model of water. J Chem Phys 2010;131:194504. [PMID: 19929057 DOI: 10.1063/1.3259970] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
47
Zhou S, Solana JR. Progress in the Perturbation Approach in Fluid and Fluid-Related Theories. Chem Rev 2009;109:2829-58. [DOI: 10.1021/cr900094p] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
48
Hlushak SP, Kalyuzhnyi YV. Phase coexistence in the hard-sphere Yukawa chain fluid with chain length polydispersity: Dimer thermodynamic perturbation theory. J Chem Phys 2008;129:224901. [DOI: 10.1063/1.3028044] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
49
Urbic T, Vlachy V, Kalyuzhnyi YV, Dill KA. Theory for the solvation of nonpolar solutes in water. J Chem Phys 2008;127:174505. [PMID: 17994825 DOI: 10.1063/1.2779329] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
50
Urbic T, Vlachy V, Kalyuzhnyi YV, Dill KA. An improved thermodynamic perturbation theory for Mercedes-Benz water. J Chem Phys 2007;127:174511. [DOI: 10.1063/1.2784124] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
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