Device for filamentous fungi growth monitoring using the multimodal frequency response of cantilevers

Fabricating Silicon Resonators for Analysing Biological Samples

The adaptability of microscale devices allows microtechnologies to be used for a wide range of applications. Biology and medicine are among those fields that, in recent decades, have applied microtechnologies to achieve new and improved functionality. However, despite their ability to achieve assay sensitivities that rival or exceed conventional standards, silicon-based microelectromechanical systems remain underutilised for biological and biomedical applications. Although microelectromechanical resonators and actuators do not always exhibit optimal performance in liquid due to electrical double layer formation and high damping, these issues have been solved with some innovative fabrication processes or alternative experimental approaches. This paper focuses on several examples of silicon-based resonating devices with a brief look at their fundamental sensing elements and key fabrication steps, as well as current and potential biological/biomedical applications.

Effect of wheat (Triticum aestivum L.) resistance, Fusarium graminearum DNA content, strain potential toxin production, and disease severity on deoxynivalenol content

Six wheat cultivars with varied resistance to Gibberella zeae (Anamorph, Fusarium graminearum Schwabe) were inoculated with six monoconidial strains of G. zeae to investigate the effect of wheat resistance to Fusarium head blight on deoxynivalenol (DON) contents. Samples were selected from grains from each plot, and heavily infected kernels and sound (uninfected) kernels prepared at 10% and 20% Fusarium-diseased kernels (FDK). The proportions of scabbed spikelets (PSS) in the field, total DON (containing DON, 3-acetyl-deoxynivalenol, and 15-acetyl-deoxynivalenol), and F. graminearum DNA (Tri5 DNA) in the samples were quantified in 2006 and 2007. PSS exhibited significant variability among the six wheat cultivars. Potential DON production also had significant differences among the six strains. DON toxin concentrations and F. graminearum DNA (Tri5 DNA) showed no significant differences among the six wheat cultivars following inoculation with similar F. graminearum strains at similar FDK levels and at similar disease severity after culture in similar conditions. DON content in grains of the tested wheat cultivars varied with inoculation strain and FDK level, but not with the resistance level of the cultivars to F. graminearum.

Microcantilever array instrument based on optical fiber and performance analysis

We developed a microcantilever array biosensor instrument based on optical readout from a microcantilever array in fluid environment. The microcantilever signals were read out sequentially by laser beams emitted from eight optical fibers. The optical fibers were coupled to lasers, while the other ends of the fibers were embedded in eight V-grooves with 250 μm pitch microfabricated from a Si wafer. Aspherical lens was used to keep the distance between lasers. A programmable logic controller was used to make the system work stably. To make sure that the output of lasers was stable, a temperature controller was set up for each laser. When the deflection signal was collected, lasers used here were set to be on for at least 400 ms in each scanning cycle to get high signal-to-noise ratio deflection curves. A test was performed by changing the temperature of the liquid cell holding a microcantilever array to verify the consistent response of the instrument to the cantilever deflections. The stability and conformance of the instrument were demonstrated by quantitative detection of mercury ions in aqueous solution and comparison detection of clenbuterol by setting test and reference cantilevers. This microcantilever array detection instrument can be applied to highly sensitive detection of chemical and biological molecules in fluid environment.

Toward Higher-Order Mass Detection: Influence of an Adsorbate's Rotational Inertia and Eccentricity on the Resonant Response of a Bernoulli-Euler Cantilever Beam

In this paper a new theoretical model is derived, the results of which permit a detailed examination of how the resonant characteristics of a cantilever are influenced by a particle (adsorbate) attached at an arbitrary position along the beam’s length. Unlike most previous work, the particle need not be small in mass or dimension relative to the beam, and the adsorbate’s geometric characteristics are incorporated into the model via its rotational inertia and eccentricity relative to the beam axis. For the special case in which the adsorbate’s (translational) mass is indeed small, an analytical solution is obtained for the particle-induced resonant frequency shift of an arbitrary flexural mode, including the effects of rotational inertia and eccentricity. This solution is shown to possess the exact first-order behavior in the normalized particle mass and represents a generalization of analytical solutions derived by others in earlier studies. The results suggest the potential for “higher-order” nanobeam-based mass detection methods by which the multi-mode frequency response reflects not only the adsorbate’s mass but also important geometric data related to its size, shape, or orientation (i.e., the mass distribution), thus resulting in more highly discriminatory techniques for discrete-mass sensing.

Nanomechanical sensors for single microbial cell growth monitoring

A nanomechanical technique for rapid real time detection and monitoring of microorganism growth will significantly reduce costs and diagnosis times in industrial and clinical settings. Owing to their label free detection mechanism and unprecedented sensitivity to the mass and elastic modulus of biological structures, dynamically operated cantilever arrays provide an opportunity to rapidly detect and track the evolution of microbial growth. Here we report the monitoring of the growth of single Aspergillus niger spores via the multimode response of microcantilevers. The fungal hyphal structure affects the cantilevers' nanomechanical properties as it propagates along the sensor. We demonstrate, for the first time, the mapping of cellular events with great accuracy using a cantilever frequency response. Imaging of growth conditions on the cantilever, which is performed in parallel, allows for verification of these results. Theoretical comparison and finite element modelling confirm experimental findings and allow for determination of the hyphal elastic modulus.

Carbohydrate coating reduces adhesion of biofilm-forming Bacillus subtilis to gold surfaces

The growth of bacterial biofilms in pipes and food tanks causes severe problems in industry. Biofilms growing on medical implants or catheters are of great concern, as they can cause serious infections and decrease the functionality of the medical device. The prevention of bacterial adhesion--the first step in colonization and biofilm formation--is therefore very important. Current research comprises alterations in surface properties, the prevention of adhesin biosynthesis, inhibition with receptor analogs, or the development of anti-adhesive vaccines. We present a new approach that allows us to study bacterial adhesion with high sensitivity in real-time while testing several different surfaces in parallel. Using the cantilever-array technique we demonstrate that coating of gold surfaces with mono- or disaccharides results in a reduction of the bacterial adhesion of the biofilm-forming bacterium Bacillus subtilis NCIB 3610 to these gold surfaces. This reduction in bacterial adhesion is independent of the studied carbohydrate. Using several mutant strains, we investigate the underlying molecular interactions, and our results suggest that adhesion to gold surfaces is mediated by thiol groups present in proteins of the bacterial cell membrane or biofilm matrix proteins expressed at low levels by the wild-type strain. Furthermore, our data indicate that the adhesion of B. subtilis NCIB 3610 to carbohydrate-coated gold surfaces is facilitated by interactions between carbohydrates installed on the cantilever gold surface and an exopolysaccharide expressed by this strain. Understanding general and specific contributions of molecular interactions mediating bacterial adhesion will enable its prevention in the future.