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Aliakseyeu A, Truong E, Hu YY, Sayko R, Dobrynin AV, Sukhishvili SA. Self-Diffusion of Star and Linear Polyelectrolytes in Salt-Free and Salt Solutions. Macromolecules 2025; 58:240-248. [PMID: 39831289 PMCID: PMC11741142 DOI: 10.1021/acs.macromol.4c01374] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2024] [Revised: 11/19/2024] [Accepted: 12/17/2024] [Indexed: 01/22/2025]
Abstract
This work explored solution properties of linear and star poly(methacrylic acids) with four, six, and eight arms (LPMAA, 4PMAA, PMAA, and 8PMAA, respectively) of matched molecular weights in a wide range of pH, salt, and polymer concentrations. Experimental measurements of self-diffusion were performed by fluorescence correlation spectroscopy (FCS), and the results were interpreted using the scaling theory of polyelectrolyte solutions. While all PMAAs were pH sensitive and showed an increase in hydrodynamic radius (R h) with pH in the dilute regime, the R h of star polymers (measured at basic pH values) was significantly smaller for the star polyacids due to their more compact structure. Fully ionized star PMAAs were also found to be less sensitive to changes in salt concentration and type of the counterion compared to linear PMAA. While R h of fully ionized linear PMAA decreased in the series Li+ > Na+ > K+ > Cs+ in agreement with the Hofmeister series, R h of star PMAAs was virtually independent of type of the counterion for eight-arm PMAA. However, molecular architecture strongly affected interactions of counterions with PMAAs. In particular, 7Li NMR revealed that the spin-lattice relaxation time T 1 of Li+ ions in low-salt solutions of eight-arm PMAA was ∼2-fold smaller than that in the solution of linear PMAA, suggesting slower Li+-ion dynamics within star polymers. An increase in concentration of monovalent chloride salts, c s, above that of the PMAA monomer unit concentration (c m) resulted in shrinking of both linear and star molecules, with the hydrodynamic size R h scaling as R h ∝ c s -0.11±0.01. Self-diffusion of linear and star polyelectrolytes was then studied in a wide range of polyelectrolyte concentrations (10-3 mol/L < c m < 0.5 mol/L) in low-salt (<10-4 mol/L of added salt) and high-salt (1 mol/L) solutions. In both the low-salt and high-salt regimes, diffusion coefficient D was lower for PMAAs with a larger number of arms at a fixed c m. In addition, in both cases, D plateaued at low polymer concentrations and decreased at higher polymer concentrations. However, while in the high-salt conditions, the concentration dependence of D reflected transitions between the dilute to semidilute solution regimes as expected for neutral chains in good and theta solvents, analysis of the diffusion data in the low-salt conditions using the scaling theory revealed a different origin of the concentration dependence of D. Specifically, in the low-salt solutions, both linear and star PMAAs exhibited unentangled (Rouse-like) dynamics in the entire range of polyelectrolyte concentrations.
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Affiliation(s)
- Aliaksei Aliakseyeu
- Department
of Materials Science & Engineering, Texas A&M University, College
Station, Texas 77840, United States
- Department
of Chemical Engineering, Texas A&M University, College Station, Texas 77840, United States
| | - Erica Truong
- Department
of Chemistry and Biochemistry, Florida State
University, Tallahassee, Florida 32306, United States
| | - Yan-Yan Hu
- Department
of Chemistry and Biochemistry, Florida State
University, Tallahassee, Florida 32306, United States
- Center of
Interdisciplinary Magnetic Resonance, the
National High Magnetic Field Laboratory, 1800 East Paul Dirac Drive, Tallahassee, Florida 32310, United States
| | - Ryan Sayko
- Department
of Chemistry, University of North Carolina
at Chapel Hill, Chapel
Hill, North Carolina 27529, United States
| | - Andrey V. Dobrynin
- Department
of Chemistry, University of North Carolina
at Chapel Hill, Chapel
Hill, North Carolina 27529, United States
| | - Svetlana A. Sukhishvili
- Department
of Materials Science & Engineering, Texas A&M University, College
Station, Texas 77840, United States
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2
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Sappl L, Likos CN, Zöttl A. Multi-particle collision dynamics for a coarse-grained model of soft colloids applied to ring polymers. J Chem Phys 2023; 159:114904. [PMID: 37724733 DOI: 10.1063/5.0165191] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Accepted: 08/16/2023] [Indexed: 09/21/2023] Open
Abstract
The simulation of polymer solutions often requires the development of methods that accurately include hydrodynamic interactions. Resolution on the atomistic scale is too computationally expensive to cover mesoscopic time and length scales on which the interesting polymer phenomena are observed. Therefore, coarse-graining methods have to be applied. In this work, the solvent is simulated using the well-established multi-particle collision dynamics scheme, and for the polymer, different coarse-graining methods are employed and compared against the monomer resolved Kremer-Grest model by their resulting diffusion coefficients. This research builds on previous work [Ruiz-Franco et al., J. Chem. Phys. 151, 074902 (2019)], in which star polymers and linear chains in a solvent were simulated and two different coarse-graining methods were developed, in order to increase computational efficiency. The present work extends this approach to ring polymers and seeks to refine one of the authors' proposed model: the penetrable soft colloid model. It was found that both proposed models are not well suited to ring polymers; however, the introduction of a factor to the PSC model delivers satisfying results for the diffusion behavior by regulating the interaction intensity with the solvent.
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Affiliation(s)
- Lisa Sappl
- Faculty of Physics, University of Vienna, Boltzmanngasse 5, Vienna 1090, Vienna, Austria
| | - Christos N Likos
- Faculty of Physics, University of Vienna, Boltzmanngasse 5, Vienna 1090, Vienna, Austria
| | - Andreas Zöttl
- Faculty of Physics, University of Vienna, Boltzmanngasse 5, Vienna 1090, Vienna, Austria
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3
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Kol R, De Somer T, D'hooge DR, Knappich F, Ragaert K, Achilias DS, De Meester S. State-Of-The-Art Quantification of Polymer Solution Viscosity for Plastic Waste Recycling. CHEMSUSCHEM 2021; 14:4071-4102. [PMID: 34324273 PMCID: PMC8519067 DOI: 10.1002/cssc.202100876] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2021] [Revised: 07/14/2021] [Indexed: 05/17/2023]
Abstract
Solvent-based recycling is a promising approach for closed-loop recovery of plastic-containing waste. It avoids the energy cost to depolymerize the plastic but still allows to clean the polymer of contaminants and additives. However, viscosity plays an important role in handling the polymer solutions at high concentrations and in the cleaning steps. This Review addresses the viscosity behavior of polymer solutions, available data, and (mostly algebraic) models developed. The non-Newtonian viscosity models, such as the Carreau and Yasuda-Cohen-Armstrong models, pragmatically describe the viscosity of polymer solutions at different concentrations and shear rate ranges. This Review also describes how viscosity influences filtration and centrifugation processes, which are crucial steps in the cleaning of the polymer and includes a polystyrene/styrene case study.
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Affiliation(s)
- Rita Kol
- Laboratory for Circular Process Engineering (LCPE)Department of Green Chemistry and TechnologyGhent UniversityGraaf Karel De Goedelaan 58500KortrijkBelgium
- Laboratory of Polymer Chemistry and TechnologyDepartment of ChemistryAristotle University of Thessaloniki54124ThessalonikiGreece
| | - Tobias De Somer
- Laboratory for Circular Process Engineering (LCPE)Department of Green Chemistry and TechnologyGhent UniversityGraaf Karel De Goedelaan 58500KortrijkBelgium
| | - Dagmar R. D'hooge
- Laboratory for Chemical Technology (LCT) and Centre for Textiles Science and Engineering (CTSE)Department of MaterialsTextiles and Chemical EngineeringFaculty of Engineering and ArchitectureGhent UniversityTechnologiepark 125 and 70a9052ZwijnaardeBelgium
| | - Fabian Knappich
- Process Development for Polymer RecyclingFraunhofer Institute for Process Engineering and Packaging IVVGiggenhauser Straße 3585354FreisingGermany
- Technical University of MunichTUM School of Life Sciences WeihenstephanAlte Akademie 885354FreisingGermany
| | - Kim Ragaert
- Center for Polymer & Material Technologies (CPMT)Department of MaterialsTextiles and Chemical EngineeringFaculty of Engineering & ArchitectureGhent UniversityTechnologiepark 130B-9052ZwijnaardeBelgium
| | - Dimitris S. Achilias
- Laboratory of Polymer Chemistry and TechnologyDepartment of ChemistryAristotle University of Thessaloniki54124ThessalonikiGreece
| | - Steven De Meester
- Laboratory for Circular Process Engineering (LCPE)Department of Green Chemistry and TechnologyGhent UniversityGraaf Karel De Goedelaan 58500KortrijkBelgium
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4
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Belyaev AV. Intradimer forces and their implication for conformations of von Willebrand factor multimers. Biophys J 2021; 120:899-911. [PMID: 33524374 DOI: 10.1016/j.bpj.2021.01.022] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2020] [Revised: 12/31/2020] [Accepted: 01/19/2021] [Indexed: 10/22/2022] Open
Abstract
The largest blood glycoprotein von Willebrand factor (VWF) responds to hydrodynamic stresses in the bloodstream with abrupt conformation changes, thus increasing its adhesivity to platelets and collagen. Arterial and microvascular hemostasis relies on mechanical and physicochemical properties of this macromolecule. Recently, it was discovered that the mechanical properties of VWF are controlled by multiple pH-dependent interactions with opposite trends within dimeric subunits. In this work, computer simulations reveal the effect of these intradimer forces on the conformation of VWF multimers in various hydrodynamic conditions. A coarse-grained computer model of VWF has been proposed and parameterized to give a good agreement with experimental data. The simulations suggest that strong attraction between VWF D4 domains increases the resistance to elongation under shear stress, whereas even intermediate attraction between VWF C domains contributes to VWF compaction in nonsheared fluid. It is hypothesized that the detailed subdimer dynamics of VWF concatamers may be one of the biophysical regulators of initial hemostasis and arterial thrombosis.
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Affiliation(s)
- Aleksey V Belyaev
- Lomonosov Moscow State University, Faculty of Physics, Moscow, Russia; IRC Mathematical modelling in Biomedicine, S.M. Nikolskii Mathematical Institute, RUDN University, Moscow, Russia.
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5
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Li R, Gompper G, Ripoll M. Tumbling and Vorticity Drift of Flexible Helicoidal Polymers in Shear Flow. Macromolecules 2021. [DOI: 10.1021/acs.macromol.0c01651] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Run Li
- Theoretical Physics of Living Matter, Institute of Biological Information Processing and Institute for Advanced Simulation, Forschungszentrum Jülich, 52425 Jülich, Germany
| | - Gerhard Gompper
- Theoretical Physics of Living Matter, Institute of Biological Information Processing and Institute for Advanced Simulation, Forschungszentrum Jülich, 52425 Jülich, Germany
| | - Marisol Ripoll
- Theoretical Physics of Living Matter, Institute of Biological Information Processing and Institute for Advanced Simulation, Forschungszentrum Jülich, 52425 Jülich, Germany
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6
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Martin-Gomez A, Eisenstecken T, Gompper G, Winkler RG. Hydrodynamics of polymers in an active bath. Phys Rev E 2020; 101:052612. [PMID: 32575238 DOI: 10.1103/physreve.101.052612] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2020] [Accepted: 04/30/2020] [Indexed: 06/11/2023]
Abstract
The conformational and dynamical properties of active polymers in solution are determined by the nature of the activity. Here, the behavior of polymers with self-propelled, active Brownian particle-type monomers differs qualitatively from that of polymers with monomers driven externally by colored-noise forces. We present simulation and theoretical results for polymers in solution in the presence of external active noise. In simulations, a semiflexible bead-spring chain is considered, in analytical calculations, a continuous linear wormlike chain. Activity is taken into account by independent monomer or site velocities, with orientations changing in a diffusive manner. In simulations, hydrodynamic interactions (HIs) are taken into account by the Rotne-Prager-Yamakawa tensor or by an implementation of the active polymer in the multiparticle-collision-dynamics approach for fluids. To arrive at an analytical solution, the preaveraged Oseen tensor is employed. The active process implies a dependence of the stationary-state properties on HIs via the polymer relaxation times. With increasing activity, HIs lead to an enhanced swelling of flexible polymers, and the conformational properties differ substantially from those of polymers with self-propelled monomers in the presence of HIs, or free-draining polymers. The polymer mean-square displacement is enhanced by HIs. Over a wide range of timescales, hydrodynamics leads to a subdiffusive regime of the site mean-square displacement for flexible active polymers, with an exponent of 5/7, larger than that of the Rouse (1/2) and Zimm (2/3) models of passive polymers.
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Affiliation(s)
- Aitor Martin-Gomez
- Theoretical Soft Matter and Biophysics, Institute of Complex Systems and Institute for Advanced Simulation, Forschungszentrum Jülich, 52425 Jülich, Germany
| | - Thomas Eisenstecken
- Theoretical Soft Matter and Biophysics, Institute of Complex Systems and Institute for Advanced Simulation, Forschungszentrum Jülich, 52425 Jülich, Germany
| | - Gerhard Gompper
- Theoretical Soft Matter and Biophysics, Institute of Complex Systems and Institute for Advanced Simulation, Forschungszentrum Jülich, 52425 Jülich, Germany
| | - Roland G Winkler
- Theoretical Soft Matter and Biophysics, Institute of Complex Systems and Institute for Advanced Simulation, Forschungszentrum Jülich, 52425 Jülich, Germany
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7
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Toneian D, Kahl G, Gompper G, Winkler RG. Hydrodynamic correlations of viscoelastic fluids by multiparticle collision dynamics simulations. J Chem Phys 2019; 151:194110. [PMID: 31757142 DOI: 10.1063/1.5126082] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The emergent fluctuating hydrodynamics of a viscoelastic fluid modeled by the multiparticle collision dynamics (MPC) approach is studied. The fluid is composed of flexible, Gaussian phantom polymers that interact by local momentum-conserving stochastic MPCs. For comparison, the analytical solution of the linearized Navier-Stokes equation is calculated, where viscoelasticity is taken into account by a time-dependent shear relaxation modulus. The fluid properties are characterized by the transverse velocity autocorrelation function in Fourier space as well as in real space. Various polymer lengths are considered-from dumbbells to (near-)continuous polymers. Viscoelasticity affects the fluid properties and leads to strong correlations, which overall decay exponentially in Fourier space. In real space, the center-of-mass velocity autocorrelation function of individual polymers exhibits a long-time tail, independent of the polymer length, which decays as t-3/2, similar to a Newtonian fluid, in the asymptotic limit t → ∞. Moreover, for long polymers, an additional power-law decay appears at time scales shorter than the longest polymer relaxation time with the same time dependence, but negative correlations, and the polymer length dependence L-1/2. Good agreement is found between the analytical and simulation results.
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Affiliation(s)
- David Toneian
- Institute for Theoretical Physics, TU Wien, Wiedner Hauptstraße 8-10, 1040 Wien, Austria
| | - Gerhard Kahl
- Institute for Theoretical Physics, TU Wien, Wiedner Hauptstraße 8-10, 1040 Wien, Austria
| | - Gerhard Gompper
- Theoretical Soft Matter and Biophysics, Institute of Complex Systems and Institute for Advanced Simulation, Forschungszentrum Jülich, 52425 Jülich, Germany
| | - Roland G Winkler
- Theoretical Soft Matter and Biophysics, Institute of Complex Systems and Institute for Advanced Simulation, Forschungszentrum Jülich, 52425 Jülich, Germany
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8
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Ruiz-Franco J, Jaramillo-Cano D, Camargo M, Likos CN, Zaccarelli E. Multi-particle collision dynamics for a coarse-grained model of soft colloids. J Chem Phys 2019; 151:074902. [PMID: 31438712 DOI: 10.1063/1.5113588] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
The growing interest in the dynamical properties of colloidal suspensions, both in equilibrium and under an external drive such as shear or pressure flow, requires the development of accurate methods to correctly include hydrodynamic effects due to the suspension in a solvent. In the present work, we generalize Multiparticle Collision Dynamics (MPCD) to be able to deal with soft, polymeric colloids. Our methods build on the knowledge of the monomer density profile that can be obtained from monomer-resolved simulations without hydrodynamics or from theoretical arguments. We hereby propose two different approaches. The first one simply extends the MPCD method by including in the simulations effective monomers with a given density profile, thus neglecting monomer-monomer interactions. The second one considers the macromolecule as a single penetrable soft colloid (PSC), which is permeated by an inhomogeneous distribution of solvent particles. By defining an appropriate set of rules to control the collision events between the solvent and the soft colloid, both linear and angular momenta are exchanged. We apply these methods to the case of linear chains and star polymers for varying monomer lengths and arm number, respectively, and compare the results for the dynamical properties with those obtained within monomer-resolved simulations. We find that the effective monomer method works well for linear chains, while the PSC method provides very good results for stars. These methods pave the way to extend MPCD treatments to complex macromolecular objects such as microgels or dendrimers and to work with soft colloids at finite concentrations.
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Affiliation(s)
- José Ruiz-Franco
- CNR-ISC, Sapienza University of Rome, Piazzale A. Moro 2, 00185 Rome, Italy
| | - Diego Jaramillo-Cano
- Faculty of Physics, University of Vienna, Boltzmanngasse 5, 1090 Vienna, Austria
| | - Manuel Camargo
- FIMEB & CICBA, Universidad Antonio Nariño - Campus Farallones, Km 18 vía Cali-Jamundí, 760030 Cali, Colombia
| | - Christos N Likos
- Faculty of Physics, University of Vienna, Boltzmanngasse 5, 1090 Vienna, Austria
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9
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Howard MP, Nikoubashman A, Palmer JC. Modeling hydrodynamic interactions in soft materials with multiparticle collision dynamics. Curr Opin Chem Eng 2019. [DOI: 10.1016/j.coche.2019.02.007] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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10
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Singh SP, Gompper G, Winkler RG. Steady state sedimentation of ultrasoft colloids. J Chem Phys 2018; 148:084901. [PMID: 29495770 DOI: 10.1063/1.5001886] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Abstract
The structural and dynamical properties of ultra-soft colloids-star polymers-exposed to a uniform external force field are analyzed by applying the multiparticle collision dynamics technique, a hybrid coarse-grain mesoscale simulation approach, which captures thermal fluctuations and long-range hydrodynamic interactions. In the weak-field limit, the structure of the star polymer is nearly unchanged; however, in an intermediate regime, the radius of gyration decreases, in particular transverse to the sedimentation direction. In the limit of a strong field, the radius of gyration increases with field strength. Correspondingly, the sedimentation coefficient increases with increasing field strength, passes through a maximum, and decreases again at high field strengths. The maximum value depends on the functionality of the star polymer. High field strengths lead to symmetry breaking with trailing, strongly stretched polymer arms and a compact star-polymer body. In the weak-field-linear response regime, the sedimentation coefficient follows the scaling relation of a star polymer in terms of functionality and arm length.
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Affiliation(s)
- Sunil P Singh
- Indian Institute of Science Education and Research Bhopal, Bhopal By pass Road Bhauri, Bhopal 462 066, Madhya Pradesh, India
| | - Gerhard Gompper
- Theoretical Soft Matter and Biophysics, Institute for Advanced Simulation and Institute of Complex Systems, Forschungszentrum Jülich, D-52425 Jülich, Germany
| | - Roland G Winkler
- Theoretical Soft Matter and Biophysics, Institute for Advanced Simulation and Institute of Complex Systems, Forschungszentrum Jülich, D-52425 Jülich, Germany
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11
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Schiller UD, Krüger T, Henrich O. Mesoscopic modelling and simulation of soft matter. SOFT MATTER 2017; 14:9-26. [PMID: 29211098 DOI: 10.1039/c7sm01711a] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
The deformability of soft condensed matter often requires modelling of hydrodynamical aspects to gain quantitative understanding. This, however, requires specialised methods that can resolve the multiscale nature of soft matter systems. We review a number of the most popular simulation methods that have emerged, such as Langevin dynamics, dissipative particle dynamics, multi-particle collision dynamics, sometimes also referred to as stochastic rotation dynamics, and the lattice-Boltzmann method. We conclude this review with a short glance at current compute architectures for high-performance computing and community codes for soft matter simulation.
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Affiliation(s)
- Ulf D Schiller
- Department of Materials Science and Engineering, Clemson University, 161 Sirrine Hall, Clemson, SC 29634, USA
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12
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Abstract
The morphology of core-shell microgels under different swelling conditions and as a function of the core-shell thickness ratio is systematically characterized by mesoscale hydrodynamic simulations. With increasing hydrophobic interaction of the shell polymers, we observe drastic morphological changes from a core-shell structure to an inverted microgel, where the core is turned to the outside, or a microgel with a patchy surface of core polymers directly exposed to the environment. We establish a phase diagram of the various morphologies. Moreover, we characterize the polymer and microgel conformations. For sufficiently thick shells, the changes of the shell size upon increasing hydrophobic interactions are well described by the Flory-Rehner theory. Additionally, this theory provides a critical line in the phase diagram separating core-shell structures from the distinct two other phases. The appearing new phases provide a novel route to nano- and microscale functionalized materials.
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Affiliation(s)
- Ali Ghavami
- Theoretical Soft Matter and
Biophysics, Institute for Advanced Simulation, Forschungszentrum Jülich GmbH, 52425 Jülich, Germany
| | - Roland G. Winkler
- Theoretical Soft Matter and
Biophysics, Institute for Advanced Simulation, Forschungszentrum Jülich GmbH, 52425 Jülich, Germany
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13
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Asta AJ, Levesque M, Vuilleumier R, Rotenberg B. Transient hydrodynamic finite-size effects in simulations under periodic boundary conditions. Phys Rev E 2017; 95:061301. [PMID: 28709218 DOI: 10.1103/physreve.95.061301] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2017] [Indexed: 11/07/2022]
Abstract
We use lattice-Boltzmann and analytical calculations to investigate transient hydrodynamic finite-size effects induced by the use of periodic boundary conditions. These effects are inevitable in simulations at the molecular, mesoscopic, or continuum levels of description. We analyze the transient response to a local perturbation in the fluid and obtain the local velocity correlation function via linear response theory. This approach is validated by comparing the finite-size effects on the steady-state velocity with the known results for the diffusion coefficient. We next investigate the full time dependence of the local velocity autocorrelation function. We find at long times a crossover between the expected t^{-3/2} hydrodynamic tail and an oscillatory exponential decay, and study the scaling with the system size of the crossover time, exponential rate and amplitude, and oscillation frequency. We interpret these results from the analytic solution of the compressible Navier-Stokes equation for the slowest modes, which are set by the system size. The present work not only provides a comprehensive analysis of hydrodynamic finite-size effects in bulk fluids, which arise regardless of the level of description and simulation algorithm, but also establishes the lattice-Boltzmann method as a suitable tool to investigate such effects in general.
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Affiliation(s)
- Adelchi J Asta
- Sorbonne Universités, UPMC Univ Paris 06, CNRS, UMR 8234 PHENIX, 4 Place Jussieu, 75005 Paris, France
| | - Maximilien Levesque
- Ecole Normale Supérieure, PSL Research University, UPMC Univ Paris 06, CNRS, Département de Chimie, PASTEUR, 24 rue Lhomond, 75005 Paris, France.,Sorbonne Universités, UPMC Univ Paris 06, ENS, CNRS, PASTEUR, 75005 Paris, France
| | - Rodolphe Vuilleumier
- Ecole Normale Supérieure, PSL Research University, UPMC Univ Paris 06, CNRS, Département de Chimie, PASTEUR, 24 rue Lhomond, 75005 Paris, France.,Sorbonne Universités, UPMC Univ Paris 06, ENS, CNRS, PASTEUR, 75005 Paris, France
| | - Benjamin Rotenberg
- Sorbonne Universités, UPMC Univ Paris 06, CNRS, UMR 8234 PHENIX, 4 Place Jussieu, 75005 Paris, France.,Réseau sur le Stockage Electrochimique de l'Energie (RS2E), FR CNRS 3459, France
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14
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Kanehl P, Stark H. Self-Organized Velocity Pulses of Dense Colloidal Suspensions in Microchannel Flow. PHYSICAL REVIEW LETTERS 2017; 119:018002. [PMID: 28731768 DOI: 10.1103/physrevlett.119.018002] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2016] [Indexed: 06/07/2023]
Abstract
We present a numerical study of dense colloidal suspensions in a pressure-driven microchannel flow in two dimensions. The colloids are modeled as elastic and frictional spheres suspended in a Newtonian fluid, which we simulate using the method of multiparticle collision dynamics. The model reproduces periodic velocity and density pulse trains, traveling upstream in the microchannel, which are found in experiments conducted by Isa et al. [Phys. Rev. Lett. 102, 058302 (2009)PRLTAO0031-900710.1103/PhysRevLett.102.058302]. We show that colloid-wall friction and the resultant force chains are crucial for the formation of these pulses. With an increasing colloid density, first solitary jams occur, which become periodic pulse trains at intermediate densities and unstable solitary pulses at high densities. We formulate a phenomenological continuum model and show how these spatiotemporal flow and density profiles can be understood as homoclinic and periodic orbits in traveling-wave equations.
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Affiliation(s)
- Philipp Kanehl
- Institute of Theoretical Physics, Technische Universität Berlin, Hardenbergstrasse 36, 10623 Berlin, Germany
| | - Holger Stark
- Institute of Theoretical Physics, Technische Universität Berlin, Hardenbergstrasse 36, 10623 Berlin, Germany
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15
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16
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Ghavami A, Kobayashi H, Winkler RG. Internal dynamics of microgels: A mesoscale hydrodynamic simulation study. J Chem Phys 2017; 145:244902. [PMID: 28049314 DOI: 10.1063/1.4972893] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We analyze the dynamics of polymers in a microgel system under different swelling conditions. A microgel particle consists of coarse-grained linear polymers which are tetra-functionally crosslinked and undergoes conformational changes in response to the external stimuli. Here, a broad range of microgel sizes, extending from tightly collapsed to strongly swollen particles, is considered. In order to account for hydrodynamic interactions, the microgel is embedded in a multiparticle collision dynamics fluid while hydrophobic attraction is modelled by an attractive Lennard-Jones potential and swelling of ionic microgels is described through the Debye-Hückel potential. The polymer dynamics is analyzed in terms of the monomer mean square displacement and the intermediate scattering function S(q, t). The scattering function decays in a stretched-exponential manner, with a decay rate exhibiting a crossover from a collective diffusive dynamics at low magnitudes of the wavevector q to a hydrodynamic-dominated dynamics at larger q. There is little difference between the intermediate scattering functions of microgels under good solvent conditions and strongly swollen gels, but strongly collapsed gels exhibit a faster decay at short times and hydrodynamic interactions become screened. In addition, we present results for the dynamics of the crosslinks, which exhibit an unexpected, semiflexible polymer-like dynamics.
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Affiliation(s)
- Ali Ghavami
- Institute for Advanced Simulation, Forschungszentrum Jülich GmbH, 52425 Jülich, Germany
| | - Hideki Kobayashi
- Institute for Advanced Simulation, Forschungszentrum Jülich GmbH, 52425 Jülich, Germany
| | - Roland G Winkler
- Institute for Advanced Simulation, Forschungszentrum Jülich GmbH, 52425 Jülich, Germany
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17
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Kondratyuk ND, Norman GE, Stegailov VV. Self-consistent molecular dynamics calculation of diffusion in higher n-alkanes. J Chem Phys 2016; 145:204504. [PMID: 27908129 DOI: 10.1063/1.4967873] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
Diffusion is one of the key subjects of molecular modeling and simulation studies. However, there is an unresolved lack of consistency between Einstein-Smoluchowski (E-S) and Green-Kubo (G-K) methods for diffusion coefficient calculations in systems of complex molecules. In this paper, we analyze this problem for the case of liquid n-triacontane. The non-conventional long-time tails of the velocity autocorrelation function (VACF) are found for this system. Temperature dependence of the VACF tail decay exponent is defined. The proper inclusion of the long-time tail contributions to the diffusion coefficient calculation results in the consistency between G-K and E-S methods. Having considered the major factors influencing the precision of the diffusion rate calculations in comparison with experimental data (system size effects and force field parameters), we point to hydrogen nuclear quantum effects as, presumably, the last obstacle to fully consistent n-alkane description.
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Affiliation(s)
- Nikolay D Kondratyuk
- Joint Institute for High Temperatures of the Russian Academy of Sciences, Moscow 125412, Russia
| | - Genri E Norman
- Joint Institute for High Temperatures of the Russian Academy of Sciences, Moscow 125412, Russia
| | - Vladimir V Stegailov
- Joint Institute for High Temperatures of the Russian Academy of Sciences, Moscow 125412, Russia
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18
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Lo Verso F, Pomposo JA, Colmenero J, Moreno AJ. Tunable slow dynamics in a new class of soft colloids. SOFT MATTER 2016; 12:9039-9046. [PMID: 27774553 DOI: 10.1039/c6sm02136k] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
By means of extensive simulations, we investigate concentrated solutions of globular single-chain nanoparticles (SCNPs), an emergent class of synthetic soft nano-objects. By increasing the concentration, the SCNPs show flattening, and even reentrant behaviour, in the density dependence of their structural and dynamic correlations, as well as a soft caging regime and weak dynamic heterogeneity. The latter is confirmed by validation of the Stokes-Einstein relation up to concentrations far beyond the overlap density. Therefore SCNPs arise as a new class of soft colloids, exhibiting slow dynamics and actualizing in a real system the structural and dynamic anomalies proposed by models of ultrasoft particles. Quantitative differences in the dynamic behaviour depend on the SCNP deformability, which can be tuned through the degree of internal cross-linking.
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Affiliation(s)
- Federica Lo Verso
- Centro de Física de Materiales (CSIC, UPV/EHU) and Materials Physics Center MPC, Paseo Manuel de Lardizabal 5, E-20018 San Sebastián, Spain.
| | - José A Pomposo
- Centro de Física de Materiales (CSIC, UPV/EHU) and Materials Physics Center MPC, Paseo Manuel de Lardizabal 5, E-20018 San Sebastián, Spain. and Departamento de Física de Materiales, Universidad del País Vasco (UPV/EHU), Apartado 1072, E-20080 San Sebastián, Spain and IKERBASQUE - Basque Foundation for Science, María Díaz de Haro 3, E-48013 Bilbao, Spain
| | - Juan Colmenero
- Centro de Física de Materiales (CSIC, UPV/EHU) and Materials Physics Center MPC, Paseo Manuel de Lardizabal 5, E-20018 San Sebastián, Spain. and Departamento de Física de Materiales, Universidad del País Vasco (UPV/EHU), Apartado 1072, E-20080 San Sebastián, Spain and Donostia International Physics Center (DIPC), Paseo Manuel de Lardizabal 4, E-20018 San Sebastián, Spain
| | - Angel J Moreno
- Centro de Física de Materiales (CSIC, UPV/EHU) and Materials Physics Center MPC, Paseo Manuel de Lardizabal 5, E-20018 San Sebastián, Spain. and Donostia International Physics Center (DIPC), Paseo Manuel de Lardizabal 4, E-20018 San Sebastián, Spain
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19
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Park JD, Myung JS, Ahn KH. A review on particle dynamics simulation techniques for colloidal dispersions: Methods and applications. KOREAN J CHEM ENG 2016. [DOI: 10.1007/s11814-016-0229-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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20
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Sablić J, Praprotnik M, Delgado-Buscalioni R. Open boundary molecular dynamics of sheared star-polymer melts. SOFT MATTER 2016; 12:2416-39. [PMID: 26820315 DOI: 10.1039/c5sm02604k] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Open boundary molecular dynamics (OBMD) simulations of a sheared star polymer melt under isothermal conditions are performed to study the rheology and molecular structure of the melt under a fixed normal load. Comparison is made with the standard molecular dynamics (MD) in periodic (closed) boxes at a fixed shear rate (using the SLLOD dynamics). The OBMD system exchanges mass and momentum with adjacent reservoirs (buffers) where the external pressure tensor is imposed. Insertion of molecules in the buffers is made feasible by implementing there a low resolution model (blob-molecules with soft effective interactions) and then using the adaptive resolution scheme (AdResS) to connect with the bulk MD. Straining with increasing shear stress induces melt expansion and a significantly different redistribution of pressure compared with the closed case. In the open sample, the shear viscosity is also a bit lowered but more stable against the viscous heating. At a given Weissenberg number, molecular deformations and material properties (recoverable shear strain and normal stress ratio) are found to be similar in both setups. We also study the modelling effect of normal and tangential friction between monomers implemented in a dissipative particle dynamics (DPD) thermostat. Interestingly, the tangential friction substantially enhances the elastic response of the melt due to a reduction of the kinetic stress viscous contribution.
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Affiliation(s)
- Jurij Sablić
- Laboratory for Molecular Modeling, National Institute of Chemistry, Hajdrihova 19, SI-1001 Ljubljana, Slovenia.
| | - Matej Praprotnik
- Laboratory for Molecular Modeling, National Institute of Chemistry, Hajdrihova 19, SI-1001 Ljubljana, Slovenia. and Department of Physics, Faculty of Mathematics and Physics, University of Ljubljana, Jadranska 19, SI-1000 Ljubljana, Slovenia
| | - Rafael Delgado-Buscalioni
- Departamento Física Teórica de la Materia Condensada, Universidad Autónoma de Madrid, Campus de Cantoblanco, E-28049 Madrid, Spain. and Condensed Matter Physics Center, IFIMAC. Campus de Cantoblanco, E-28049 Madrid, Spain
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21
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Prabhu VM, Venkataraman S, Yang YY, Hedrick JL. Equilibrium Self-Assembly, Structure, and Dynamics of Clusters of Star-Like Micelles. ACS Macro Lett 2015; 4:1128-1133. [PMID: 35614817 DOI: 10.1021/acsmacrolett.5b00507] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Hierarchical structure and dynamics of clusters of self-assembled star-like micelles formed by oligocarbonate-fluorene end-functionalized poly(ethylene glycol) triblock copolymers were characterized by small-angle neutron scattering and static and dynamic light scattering at concentrations below the gel point. These micelles persist in equilibrium with concentration-dependent sized hierarchical clusters. When probed at length scales within the clusters by dynamic light scattering, the clusters exhibit Zimm dynamics, reminiscent of dilute mesoscale chains. The ability to form chain-like clusters is attributed to the π-π stacking of the fluorene groups that drives the formation of micelles. This enables a design variable to control the rheology of injectable gels. Further, predictions of the solvent (D2O) viscosity show deviations consistent with polymers in organic solvents, stressing a need for refinement of molecular theories of polymer dynamics.
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Affiliation(s)
- Vivek M. Prabhu
- Material
Measurement Laboratory, National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, Maryland 20899, United States
| | - Shrinivas Venkataraman
- Institute of Bioengineering
and Nanotechnology, 31 Biopolis Way,
The Nanos, Singapore 138669, Singapore
| | - Yi Yan Yang
- Institute of Bioengineering
and Nanotechnology, 31 Biopolis Way,
The Nanos, Singapore 138669, Singapore
| | - James L. Hedrick
- IBM Almaden Research
Center, 650 Harry Road, San Jose, California 95120, United States
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22
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Ceratti DR, Obliger A, Jardat M, Rotenberg B, Dahirel V. Stochastic rotation dynamics simulation of electro-osmosis. Mol Phys 2015. [DOI: 10.1080/00268976.2015.1037370] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- Davide R. Ceratti
- Sorbonne Universités, UPMC Univ Paris 06, UMR PHENIX , Paris, France
- CNRS, UMR PHENIX , Paris, France
- Collège de France, UMR 7574, Chimie de la Matière Condensée de Paris
| | - Amaël Obliger
- Concrete Sustainability Hub, Department of Civil and Environmental Engineering, and MIT-CNRS Joint Laboratory, Massachusetts Institute of Technology , Cambridge, MA, United States
| | - Marie Jardat
- Sorbonne Universités, UPMC Univ Paris 06, UMR PHENIX , Paris, France
- CNRS, UMR PHENIX , Paris, France
| | - Benjamin Rotenberg
- Sorbonne Universités, UPMC Univ Paris 06, UMR PHENIX , Paris, France
- CNRS, UMR PHENIX , Paris, France
| | - Vincent Dahirel
- Sorbonne Universités, UPMC Univ Paris 06, UMR PHENIX , Paris, France
- CNRS, UMR PHENIX , Paris, France
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23
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Kanehl P, Stark H. Hydrodynamic segregation in a bidisperse colloidal suspension in microchannel flow: A theoretical study. J Chem Phys 2015; 142:214901. [PMID: 26049518 DOI: 10.1063/1.4921800] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Colloids in suspension exhibit shear-induced migration towards regions of low viscous shear. In dense bidisperse colloidal suspensions under pressure driven flow large particles can segregate in the center of a microchannel and the suspension partially demixes. To develop a theoretical understanding of these effects, we formulate a phenomenological model for the particle currents based on the work of Phillips et al. [Phys. Fluids 4, 30 (1992)]. We also simulate hard spheres under pressure-driven flow in two and three dimensions using the mesoscale simulation technique of multi-particle collision dynamics. Using a single fit parameter for the intrinsic diffusivity, our theory accurately reproduces the simulated density profiles across the channel. We present a detailed parameter study on how a monodisperse suspension enriches the channel center and quantitatively confirm the experimental observation that a binary colloidal mixture partially segregates into its two species. In particular, we always find a strong accumulation of large particles in the center. Qualitative differences between two and three dimensions reveal that collective diffusion is more relevant in two dimensions.
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Affiliation(s)
- Philipp Kanehl
- Institute of Theoretical Physics, Technische Universität Berlin, Hardenbergstr. 36, 10623 Berlin, Germany
| | - Holger Stark
- Institute of Theoretical Physics, Technische Universität Berlin, Hardenbergstr. 36, 10623 Berlin, Germany
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24
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Kikugawa G, Nakano T, Ohara T. Hydrodynamic consideration of the finite size effect on the self-diffusion coefficient in a periodic rectangular parallelepiped system. J Chem Phys 2015; 143:024507. [DOI: 10.1063/1.4926841] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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25
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Botan A, Marry V, Rotenberg B. Diffusion in bulk liquids: finite-size effects in anisotropic systems. Mol Phys 2015. [DOI: 10.1080/00268976.2015.1021730] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- Alexandru Botan
- Centre for Materials Science and Nanotechnology, Department of Physics, University of Oslo , Oslo, Norway
| | - Virginie Marry
- Sorbonne Universités , UPMC Univ Paris 06, UMR PHENIX, Paris, France
- CNRS , UMR PHENIX, Paris, France
| | - Benjamin Rotenberg
- Sorbonne Universités , UPMC Univ Paris 06, UMR PHENIX, Paris, France
- CNRS , UMR PHENIX, Paris, France
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26
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Poblete S, Wysocki A, Gompper G, Winkler RG. Hydrodynamics of discrete-particle models of spherical colloids: a multiparticle collision dynamics simulation study. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 90:033314. [PMID: 25314571 DOI: 10.1103/physreve.90.033314] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2014] [Indexed: 06/04/2023]
Abstract
We investigate the hydrodynamic properties of a spherical colloid model, which is composed of a shell of point particles by hybrid mesoscale simulations, which combine molecular dynamics simulations for the sphere with the multiparticle collision dynamics approach for the fluid. Results are presented for the center-of-mass and angular velocity correlation functions. The simulation results are compared with theoretical results for a rigid colloid obtained as a solution of the Stokes equation with no-slip boundary conditions. Similarly, analytical results of a point-particle model are presented, which account for the finite size of the simulated system. The simulation results agree well with both approaches on appropriative time scales; specifically, the long-time correlations are quantitatively reproduced. Moreover, a procedure is proposed to obtain the infinite-system-size diffusion coefficient based on a combination of simulation results and analytical predictions. In addition, we present the velocity field in the vicinity of the colloid and demonstrate its close agreement with the theoretical prediction. Our studies show that a point-particle model of a sphere is very well suited to describe the hydrodynamic properties of spherical colloids, with a significantly reduced numerical effort.
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Affiliation(s)
- Simón Poblete
- Theoretical Soft Matter and Biophysics, Institute of Complex Systems and Institute for Advanced Simulation, Forschungszentrum Jülich, D-52425 Jülich, Germany
| | - Adam Wysocki
- Theoretical Soft Matter and Biophysics, Institute of Complex Systems and Institute for Advanced Simulation, Forschungszentrum Jülich, D-52425 Jülich, Germany
| | - Gerhard Gompper
- Theoretical Soft Matter and Biophysics, Institute of Complex Systems and Institute for Advanced Simulation, Forschungszentrum Jülich, D-52425 Jülich, Germany
| | - Roland G Winkler
- Theoretical Soft Matter and Biophysics, Institute of Complex Systems and Institute for Advanced Simulation, Forschungszentrum Jülich, D-52425 Jülich, Germany
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