Water around fullerene shape amphiphiles: A molecular dynamics simulation study of hydrophobic hydration

Effect of extracorporeal circulation on structure of main components of animal plasma - ATR-IR and 2D-COS studies: Part I

Every year, more and more adults and children with severe cardiac and/or respiratory failure require connection to extracorporeal circulation (ECC). Despite a life-saving role in emergency settings, the use of ECC is associated with several serious complications, which result from structural changes in the plasma components. As yet, the molecular mechanism of these changes was not well recognized, and therefore we undertook the first spectroscopic study of structural changes in plasma during ECC. Vibrational spectroscopy coupled with two-dimensional correlation spectroscopy (2D-COS) is a powerful tool for elucidation of variations at a molecular level. The spectra of animal plasma were recorded by ATR-IR (Attenuated Total Reflection-Infrared) technique, which enables measurements of strongly absorbing samples in a non-destructive way. Moving-window and 2D-COS methods were used to obtain more detailed information about the correlation between spectral features and vibrations of functional groups. A comprehensive analysis of variations in the main plasma components requires using bands from both polar (NH, OH, CO, and CO) and non-polar groups (aliphatic and aromatic moieties). Of particular interest is the effect of the state of water on the structure and intermolecular interactions of the plasma under ECC.

Adsorption of molecular hydrogen (H2) on a fullerene (C60) surface: insights from density functional theory and molecular dynamics simulation

Understanding the adsorption behavior of molecular hydrogen (H2) on solid surfaces is essential for a variety of technological applications, including hydrogen storage and catalysis. We examined the adsorption of H2 (∼2800 configurations) molecules on the surface of fullerene (C60) using a combined approach of density functional theory (DFT) and molecular dynamics (MD) simulations with an improved Lennard-Jones (ILJ) potential force field. First, we determined the adsorption energies and geometries of H2 on the C60 surface using DFT calculations. Calculations of the electronic structure help elucidate underlying mechanisms administrating the adsorption process by revealing how H2 molecules interact with the C60 surface. In addition, molecular dynamics simulations were performed to examine the dynamic behavior of H2 molecules on the C60 surface. We accurately depicted the intermolecular interactions between H2 and C60, as well as the collective behavior of adsorbed H2 molecules, using an ILJ potential force field. Our findings indicate that H2 molecules exhibit robust physisorption on the C60 surface, forming stable adsorption structures with favorable adsorption energies. Calculated adsorption energies and binding sites are useful for designing efficient hydrogen storage materials and comprehending the nature of hydrogen's interactions with carbon-based nanostructures. This research provides a comprehensive understanding of H2 adsorption on the C60 surface by combining the theoretical framework of DFT calculations with the dynamical perspective of MD simulations. The outcomes of the present research provide new insights into the fields of hydrogen storage and carbon-based nanomaterials, facilitating the development of efficient hydrogen storage systems and advancing the use of molecular hydrogen in a variety of applications.

Water Adsorption on π-Surfaces of Open-Fullerenes

Understanding the water adsorptive behavior of fullerenes is of particular importance for their material application in aqueous media. The conventional fullerenols usually provide complex physical pictures of water adsorption due to their uncontrollable hydroxylation degree and substitution pattern. Herein, we focus on poorly hydroxylated fullerenes with well-defined structures. The water adsorptive behavior was examined by synchrotron IR spectroscopy and computational studies. As a result, three types of IR bands were observed for adsorbed water. The population of the three states was considerably altered by the orientational difference of the hydroxy groups. Nevertheless, water adsorption could not occur for 9-fluorenol and catechol. This indicates that the Lewis acidic fullerene π-surface plays a prominent role in water adsorption, while the rather Lewis basic π-surface of 9-fluorenol is unable to attract much water at a boundary with humid air.

Open-[60]fullerenols with water adsorbed both inside and outside

The water affinity on [60]fullerenols was found to be governed by surface electrostatic potential while water aggregation is initiated by the hydroxy groups attached on the carbon surface. The molecular water adsorption at the internal sphere caused a significnat inhibition of water adsorption at the external carbon surface.

Hydrophilic and Apolar Hydration in Densely Grafted Cationic Brushes and Counterions with Large Mobilities

We employ an all-atom molecular dynamics (MD) simulation framework to unravel water microstructure and ion properties for cationic [poly(2-(methacryloyloxy)ethyl) trimethylammonium chloride] (PMETAC) brushes with chloride ions as counterions. First, we identify locally separate water domains (or first hydration shells) each around {N(CH3)3}+ and the C═O functional groups of the PMETAC chain and one around the Cl- ion. These first hydration shells around the respective moieties overlap, and the extent of the overlap depends on the nature of the species triggering it. Second, despite the overlap, the water molecules in these domains demonstrate disparate properties dictated by the properties of the atoms and groups around which they are located. For example, the presence of the methyl groups makes the {N(CH3)3}+ group trigger apolar hydration as evidenced by the corresponding orientation of the dipole of the water molecules around the {N(CH3)3}+ moiety. These water molecules around the {N(CH3)3}+ group also have enhanced tetrahedrality compared to the water molecules constituting the hydration layer around the C═O group and the Cl- counterion. Our simulations also identify that there is an intervening water layer between the Cl- ion and {N(CH3)3}+ group: this layer prevents the Cl- ion from coming very close to the {N(CH3)3}+ group. As a consequence, there is a significantly large mobility of the Cl- ions inside the PMETAC brush layer. Furthermore, the C═O group of the polyelectrolyte (PE) chain, due to the partial negative charge on the oxygen atom and the specific structure of the PMETAC brush system, demonstrates strongly hydrophilic behavior and enforces a specific dipole response of water molecules analogous to that experienced by water around anionic species of high charge density. In summary, our findings confirm that PMETAC brushes undergo hydrophilic hydration at one site and apolar hydration at another site and ensure large mobility of the supported Cl- counterions.

Water dynamics in the hydration shell of hyper-branched poly-ethylenimine

We performed THz and GHz dielectric relaxation spectroscopy to investigate the reorientational dynamics of water molecules in the hydration shell of amphiphilic hyper-branched poly-ethylenimine (HPEI). Four Debye equations were employed to describe four types of water in the hydration shell, including bulk-like water, under-coordinated water, slow water (water molecules hydrating the hydrophobic groups and water molecules accepting hydrogen bonds from the NH₂ groups) and super slow water (water molecules donating hydrogen bonds to and accepting hydrogen bonds from NH groups). The time scales of undercoordinated and bulk-like water show a slight decline from 0.4 to 0.1 ps and from 8 to 2 ps, respectively. Because of hydrophilic amino groups, HPEI molecules exhibit a strong retardation effect, where the time scales of slow and super slow water increase with concentration from 17 to 39.9 ps and from 88 to 225 ps, respectively.

Additive-induced ordered structures formed by PC71BM fullerene derivatives

We report the results of an experimental and theoretical study of structure formation in mixtures of phenyl-C₇₁-butyric acid methyl ester (PC₇₁BM) with high boiling octane based solvent additives 1,8-octanedithiol (ODT), 1,8-dibromooctane, and 1,8-diiodooctane obtained by evaporation of a host-solvent (chlorobenzene). Experimental studies by DSC, SAXS and WAXS methods found evidence of crystallization of fullerenes in the presence of the high boiling additives in the mixtures. A molecular dynamics simulation of a PC₇₁BM/ODT mixture revealed the self-assembly of fullerenes into sponge-like network structures.

Structural Dynamics of Neighboring Water Molecules of N-Isopropylacrylamide Pentamer

Poly(N-isopropylacrylamide) (PNIPAM) is a popular polymer widely used in smart hydrogel synthesis due to its thermo-responsive behavior in aqueous medium. Aqueous PNIPAM hydrogels can reversibly swell and collapse below and above their lower critical solution temperature (LCST), respectively. The present work used molecular dynamics simulations to explore the behavior of water molecules surrounding the side chains of a NIPAM pentamer in response to temperature changes (273-353 K range) near its experimental LCST (305 K). Results suggest a strong inverse correlation of temperature with water density and hydrophobic hydration character of the first coordination shell around the isopropyl groups. Integrity of the first and second coordination shells is further characterized by polygon ring analysis. Predominant occurrence of pentagons suggests clathrate-like behavior of both shells at lower temperatures. This predominance is eventually overtaken by 4-membered rings as temperature is increased beyond 303 and 293 K for the first and second coordination shells, respectively, losing their clathrate-like property. It is surmised that this temperature-dependent stability of the coordination shells is one of the important factors that controls the reversible swell-collapse mechanism of PNIPAM hydrogels.

Enhanced Cavitation and Hydration Crossover of Stretched Water in the Presence of C60

We performed molecular dynamics simulations on systems containing stretched water and a C₆₀ buckyball molecule. Our goals were to understand how the presence of the hydrophobic impurity influences the rate of cavitation in stretched water and how the change in pressure (an increase in the value of negative pressure) affects the nature of hydrophobic hydration. Our simulations show that the presence of a buckyball increases the rate of cavitation in water under negative pressure. When studying the influence of the degree of stretching on hydration, we observed that at pressures above -100 MPa the mechanism of hydrophobic hydration is the one that characterizes hydration of a small particle. At some pressure below -100 MPa, there is a crossover in the mechanism of hydration where dewetting occurs by forming cavities next to the surface of the buckyball, and this is characteristic of hydrophobic hydration of large particles.

Interfacial structural crossover and hydration thermodynamics of charged C60 in water

Classical molecular dynamics simulations of the hydration thermodynamics, structure, and dynamics of water in hydration shells of charged buckminsterfullerenes are presented in this study. Charging of fullerenes leads to a structural transition in the hydration shell, accompanied by creation of a significant population of dangling O-H bonds pointing toward the solute. In contrast to the well accepted structure-function paradigm, this interfacial structural transition causes nearly no effect on either the dynamics of hydration water or on the solvation thermodynamics. Linear response to the solute charge is maintained despite significant structural changes in the hydration shell, and solvation thermodynamic potentials are nearly insensitive to the altering structure. Only solvation heat capacities, which are higher thermodynamic derivatives of the solvation free energy, indicate some sensitivity to the local hydration structure. We have separated the solvation thermodynamic potentials into direct solute-solvent interactions and restructuring of the hydration shell and analyzed the relative contributions of electrostatic and nonpolar interactions to the solvation thermodynamics.

Water-mediated curvature change in graphene by single-walled carbon nanotubes

Novel nanostructured materials possessing new architectural segments can be synthesized using various combinations of graphene and carbon nanotubes (CNT) that can result in the generation of enhanced physico-chemical properties within the hybrids. Comprehending the various physical processes involved in the creation of these new segments is crucial for designing an optimized nanomaterial for a specific purpose. In this paper we report induced folding in a graphene sheet resulting from the physical interactions between water-mediated graphene and a CNT. Owing to robust binding interactions between the CNT and a compatible graphene sheet, the latter forms a second domed layer around the former culminating in a structure equivalent to a double-walled CNT. The induced curvature change in graphene by CNT was found to have a strong dependence upon their relative physical dimensions. For example, CNT possessing extremely small diameters are unable to induce any significant curvature changes in longer graphene sheets. The potential-of-mean force (PMF) between our reference graphene and CNT in water suggests a favorable binding interaction of -14.5 kcal mol-1. The breakdown of the PMF into direct graphene-nanotube interactions and water-mediated interactions reveals a huge reduction in the strongly attractive binding interactions between graphene and CNT by the water molecules.

Effect of Spacer Length and Solvent on the Concentration-Driven Aggregation of Cationic Hydrogen-Bonding Donor Polythiophenes

Aggregation of cationic isothiouronium polythiophenes with alkoxy-spacers of different lengths at the 3-position of the thiophene ring was studied in solvents of different polarities. Hydrogen-bonding capacity was assessed by steady-state absorption and fluorescence spectroscopy, whereas the aggregation in aqueous solutions was studied by electron paramagnetic resonance spectroscopy, using paramagnetic probes of different polarities. The two polymers displayed similar features in respect to conformation, effect of cosolvents on aggregation, unstructured absorption-fluorescence spectra, Stokes shifts when aggregated, solvatochromic effect, and self-quenching concentration. However, these polymers also showed different specific interactions with water, Stokes shifts in water, effect of the solvent on the extent of dominant state of the S1 level, and also different inner cavities and hydrophobic-hydrophilic surface area in aqueous solution aggregates. Water maximized the difference between the polymers concerning the effect of specific increases in concentration, whereas the presence of 1,4-dioxane generated almost identical effects on both polymers.

Does C60 fullerene act as a transporter of small aromatic molecules?

C₆₀ fullerene is reported to directly interact with biomolecules, such as aromatic mutagens or anticancer drugs. Therefore, it is extensively studied for its potential application in the fields of drug delivery and chemoprevention. Understanding the nature of fullerene-drugs interactions might contribute to optimization and modification of the existing chemotherapy systems. Possible interactions between ICR-191, a model acridine mutagen, with well-established biophysical properties and mutagenic activity, and C₆₀ fullerene aqueous solution were investigated by broad range of biophysical methods, such as Dynamic Light Scattering, Isothermal Titration Calorimetry, and Atomic Force Microscopy. Additionally, to determine biological activity of ICR-191-C₆₀ fullerene mixtures, Ames mutagenicity test was employed. It was demonstrated that C₆₀ fullerene interacts non-covalently with ICR-191 and has strong affinity to bacterial membranes. The obtained results provide practical insight into C₆₀ fullerene interactions with aromatic compounds.

Photosensitive Cationic Azobenzene Surfactants: Thermodynamics of Hydration and the Complex Formation with Poly(methacrylic acid)

In this computational work, we investigate the photosensitive cationic surfactants with the trimethylammonium or polyamine hydrophilic head and the azobenzene-containing hydrophobic tail. The azobenzene-based molecules are known to undergo a reversible trans-cis-trans isomerization reaction when subjected to UV-visible light irradiation. Combining the density functional theory and the all-atom molecular dynamics simulations, the structural and the hydration properties of the trans- and the cis-isomers and their interaction with the oppositely charged poly(methacrylic acid) in aqueous solution are investigated. We establish and quantify the correlations of the molecular structure and the isomerization state of the surfactants and their hydrophilicity/hydrophobicity and the self-assembling altered by light. For this reason, we compare the hydration free energies of the trans- and the cis-isomers. Moreover, the investigations of the interaction strength between the azobenzene molecules and the polyanion provide additional elucidations of the recent experimental and theoretical studies on the light triggered reversible deformation behavior of the microgels and the polymer brushes loaded with azobenzene surfactants.

Origin of the blueshift of water molecules at interfaces of hydrophilic cyclic compounds

Water molecules at interfaces of materials exhibit enigmatic properties. A variety of spectroscopic studies have observed a high-frequency motion in these water molecules, represented by a blueshift, at both hydrophobic and hydrophilic interfaces. However, the molecular mechanism behind this blueshift has remained unclear. Using Raman spectroscopy and ab initio molecular dynamics simulations, we reveal the molecular mechanism of the blueshift of water molecules around six monosaccharide isomers. In the first hydration shell, we found weak hydrogen-bonded water molecules that cannot have a stable tetrahedral water network. In the water molecules, the vibrational state of the OH bond oriented toward the bulk solvent strongly contributes to the observed blueshift. Our work suggests that the blueshift in various solutions originates from the vibrational motions of these observed water molecules.

Solvation of Carbon Nanoparticles in Water/Alcohol Mixtures: Using Molecular Simulation To Probe Energetics, Structure, and Dynamics

Molecular dynamics simulations were used to examine the solvation behavior of buckminsterfullerene and single-walled carbon nanotubes (SWCNT) in a range of water/alcohol solvent compositions at 1 atm and 300 K. Results indicate that the alcohols assume the role of pseudosurfactants by shielding the nanotube from the more unfavorable interactions with polar water molecules. This is evident in both the free energies of transfer (ΔΔG_water→xOH = -68.1 kJ/mol and -86.5 kJ/mol for C₆₀ in methanol and ethanol; ΔΔG_water→xOH = -345.6 kJ/mol and -421.2 kJ/mol for the (6,5)-SWCNT in methanol and ethanol) and the composition of the solvation shell at intermediate alcohol concentrations. Additionally, we have observed the retardation of both the translational and rotational dynamics of molecules near the nanoparticle surface through use of time correlation functions. A 3-fold increase in the residence times of the alcohol molecules within the solvation shells at low concentrations further reveals their surfactant-like behavior. Such interactions are important when considering the complex molecular environment present in many schemes used for nanoparticle purification techniques.

Direct Aqueous Dispersion of Carbon Nanotubes Using Nanoparticle-Formed Fullerenes and Self-Assembled Formation of p/n Heterojunctions with Polythiophene

Single-walled carbon nanotubes (SWCNTs) have received much attention because of their potential in optoelectronic applications. Pristine SWCNTs exhibit substantial van der Waals interactions and hydrophobic characteristics, so precipitation occurs immediately in most organic solvents and water. Highly toxic and hazardous chemicals are often used to obtain well-dispersed SWCNTs. Developing environmentally friendly processing methods for safe and practical applications is a great challenge. Here, we demonstrate direct exfoliation of SWCNTs in pure water only with n-type semiconducting fullerene nanoparticles. The resultant SWCNTs can be well-dispersed in water, where they remain essentially unchanged for several weeks. Adding an aqueous solution of p-type semiconducting water-soluble polythiophene yields self-assembled p/n heterojunctions between polythiophene and the nanoparticles. The aqueous-dispersed SWCNTs yield photocurrent responses in solution-processed thin films as a potential application of water-dispersed carbon nanomaterials.

Thermodynamics of hydration of fullerols [C60(OH)n] and hydrogen bond dynamics in their hydration shells

Molecular dynamics simulations of fullerene and fullerols [C₆₀(OH)_n, where n = 2-30] in aqueous solutions have been performed for the purpose of obtaining a detailed understanding of the structural and dynamic properties of these nanoparticles in water. The structures, dynamics and hydration free energies of the solute molecules in water have been analysed. Radial distribution functions, spatial density distribution functions and hydrogen bond analyses are employed to characterize the solvation shells of water around the central solute molecules. We have found that water molecules form two solvation shells around the central solute molecule. Hydrogen bonding in the bulk solvent is unaffected by increasing n. The large decrease in solvation enthalpies of these solute molecules for n > 14 enhances solubilisation. The diffusion constants of solute molecules decrease with increasing n. The solvation free energy of C₆₀ in water is positive (52.8 kJ/mol), whereas its value for C₆₀(OH)₃₀ is highly negative (-427.1 kJ/mol). The effects of surface hydroxylation become more dominant once the fullerols become soluble.

Recent developments in the theoretical, simulational, and experimental studies of the role of water hydrogen bonding in hydrophobic phenomena

Hydrophobic effects (hydrophobic hydration and hydrophobic interaction) constitute an important element of a wide variety of phenomena relevant to biological, physical, chemical, environmental, engineering, and pharmaceutical sciences, such as the immiscibility of oil and water, self-assembly of amphiphiles leading to micelle and membrane formation, folding and stability and unfolding of the native structure of a biologically active protein, gating of ion channels, wetting, froth floatation, and adhesion. On the other hand, the hydrogen bonding ability of water plays a major (if not crucial) role in hydrophobic phenomena. We present a review of most important and relatively recent experimental, simulational, and theoretical research on hydrophobic phenomena in various systems. With a particular interest we survey investigations clarifying the role of water hydrogen bonding therein, because it has been the main object of our own recent research. We have developed a probabilistic hydrogen bond (PHB) model that allows one to obtain an analytic expression for the number of bonds per water molecule as a function of its distance to a hydrophobe, hydrophobe radius, and temperature. Knowing that function, one can explicitly identify a water hydrogen bond contribution to the external potential whereto a water molecule is subjected near a hydrophobe. Combining the PHB model with the classical density functional theory (DFT), one can examine the contribution of water hydrogen bonding to the temperature and lengthscale effects on the hydration of particles and on their solvent-mediated interactions over the entire low-to-high temperature and small-to-large lengthscale ranges. We applied the combined DFT/PHB model to study a variety of hydrophobic phenomena such as (liquid) water in contact with a hydrophobic plate, solvation of spherical solutes of various radii in associated and non-associated liquids at various temperatures, the solvent-mediated interaction of spherical solutes and its temperature dependence, interaction of C60 fullerenes in water, temperature effect on the evaporation lengthscale of water confined between two hydrophobes, temperature dependence of the effective width of the solute-solvent transition layer and average density therein. These applications demonstrated that the DFT/PHB model can serve as a valuable tool in studying hydrophobic phenomena because it constitutes a balanced combination of simplicity, accuracy, and detail. The predictions of the combined DFT/PHB approach for the solvent density profiles and thermodynamic aspects of hydrophobic phenomena are generally in good agreement with experiments and simulations. For example, it predicts the small-to-large crossover lengthscale of its mechanism to be approximately in the range from 1nm to 4nm, and decreasing with increasing temperature. It also suggests that, in terms of the average fluid density in the solute-solvent transition layer, the transition layer for small hydrophobes (of radii ≲2 nm) becomes enriched with rather than depleted of fluid when both the solvent-solute affinity and hb-energy alteration ratio become large enough. The boundary values of these parameters, needed for the depletion-to-enrichment crossover, are predicted to decrease with increasing temperature.

Towards better understanding of C60organosols

The C₆₀colloidal species in acetonitrile are negatively charged owing to formation of anion-radicals. Electrolytes coagulate the organosol, and multi-charged cations cause the re-charging of the particles.

Fullerenes in Aromatic Solvents: Correlation between Solvation-Shell Structure, Solvate Formation, and Solubility

In this work, an all-atom molecular dynamics simulation technique was employed to gain insight into the dynamic structure of the solvation shell formed around C60 and phenyl-C61-butyric acid methyl ester (PCBM) in nine aromatic solvents. A new method was developed to visualize and quantify the distribution of solvent molecule orientations in the solvation shell. A strong positive correlation was found between the regularity of solvent molecule orientations in the solvation shell and the experimentally obtained solubility limits for both C60 and PCBM. This correlation was extended to predict a solubility of 36 g/L for PCBM in 1,2,4-trimethylbenze. The relationship between solvation-shell structure and solubility provided detailed insight into solvate formation of C60 and solvation in relation to solvent molecular structure and properties. The determined dependence of the solvation-shell structure on the geometric shape of the solvent might allow for enhanced control of fullerene solution-phase behavior during processing by chemically tailoring the solvent molecular structure, potentially diminishing the need for costly and environmentally harmful halogenated solvents and/or additives.