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Reidelbach M, Bai M, Schneeberger M, Zöllner MS, Kubicek K, Kirchberg H, Bressler C, Thorwart M, Herrmann C. Solvent Dynamics of Aqueous Halides before and after Photoionization. J Phys Chem B 2023; 127:1399-1413. [PMID: 36728132 DOI: 10.1021/acs.jpcb.2c07992] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
Electron transfer reactions can be strongly influenced by solvent dynamics. We study the photoionization of halides in water as a model system for such reactions. There are no internal nuclear degrees of freedom in the solute, allowing the dynamics of the solvent to be uniquely identified. We simulate the equilibrium solvent dynamics for Cl-, Br-, I-, and their respective neutral atoms in water, comparing quantum mechanical/molecular mechanical (QM/MM) and classical molecular dynamics (MD) methods. On the basis of the obtained configurations, we calculate the extended X-ray absorption fine structure (EXAFS) spectra rigorously based on the MD snapshots and compare them in detail with other theoretical and experimental results available in the literature. We find our EXAFS spectra based on QM/MM MD simulations in good agreement with their experimental counterparts for the ions. Classical MD simulations for the ions lead to EXAFS spectra that agree equally well with the experiment when it comes to the oscillatory period of the signal, even though they differ from the QM/MM radial distribution functions extracted from the MD. The amplitude is, however, considerably overestimated. This suggests that to judge the reliability of theoretical simulation methods or to elucidate fine details of the atomistic dynamics of the solvent based on EXAFS spectra, the amplitude as well as the oscillatory period need to be considered. If simulations fail qualitatively, as does the classical MD for the aqueous neutral halogen atoms, the resulting EXAFS will also be strongly affected in both oscillatory period and amplitude. The good reliability of QM/MM-based EXAFS simulations, together with clear qualitative differences in the EXAFS spectra found between halides and their atomic counterparts, suggests that a combined theory and experimental EXAFS approach is suitable for elucidating the nonequilibrium solvent dynamics in the photoionization of halides and possibly also for electron transfer reactions in more complex systems.
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Affiliation(s)
- Marco Reidelbach
- Department of Chemistry, Universität Hamburg, Harbor Bldg. 610, Luruper Chaussee 149, 22761Hamburg, Germany.,The Hamburg Centre of Ultrafast Imaging, Luruper Chaussee 149, 22761Hamburg, Germany
| | - Mei Bai
- The Hamburg Centre of Ultrafast Imaging, Luruper Chaussee 149, 22761Hamburg, Germany.,I. Institut für Theoretische Physik, Universität Hamburg, Notkestr. 9, 22607Hamburg, Germany
| | - Michaela Schneeberger
- Department of Chemistry, Universität Hamburg, Harbor Bldg. 610, Luruper Chaussee 149, 22761Hamburg, Germany.,The Hamburg Centre of Ultrafast Imaging, Luruper Chaussee 149, 22761Hamburg, Germany
| | - Martin Sebastian Zöllner
- Department of Chemistry, Universität Hamburg, Harbor Bldg. 610, Luruper Chaussee 149, 22761Hamburg, Germany.,The Hamburg Centre of Ultrafast Imaging, Luruper Chaussee 149, 22761Hamburg, Germany
| | - Katharina Kubicek
- The Hamburg Centre of Ultrafast Imaging, Luruper Chaussee 149, 22761Hamburg, Germany.,Department of Physics, Universität Hamburg, Notkestr. 85, 22607Hamburg, Germany.,European XFEL, Holzkoppel 4, 22869Schenefeld, Germany
| | - Henning Kirchberg
- The Hamburg Centre of Ultrafast Imaging, Luruper Chaussee 149, 22761Hamburg, Germany.,I. Institut für Theoretische Physik, Universität Hamburg, Notkestr. 9, 22607Hamburg, Germany
| | - Christian Bressler
- The Hamburg Centre of Ultrafast Imaging, Luruper Chaussee 149, 22761Hamburg, Germany.,Department of Physics, Universität Hamburg, Notkestr. 85, 22607Hamburg, Germany.,European XFEL, Holzkoppel 4, 22869Schenefeld, Germany
| | - Michael Thorwart
- The Hamburg Centre of Ultrafast Imaging, Luruper Chaussee 149, 22761Hamburg, Germany.,I. Institut für Theoretische Physik, Universität Hamburg, Notkestr. 9, 22607Hamburg, Germany
| | - Carmen Herrmann
- Department of Chemistry, Universität Hamburg, Harbor Bldg. 610, Luruper Chaussee 149, 22761Hamburg, Germany.,The Hamburg Centre of Ultrafast Imaging, Luruper Chaussee 149, 22761Hamburg, Germany
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Freixas VM, Nelson T, Ondarse-Alvarez D, Nijjar P, Mikhailovsky A, Zhou C, Fernandez-Alberti S, Bazan GC, Tretiak S. Experimental and theoretical study of energy transfer in a chromophore triad: What makes modeling dynamics successful? J Chem Phys 2020; 153:244114. [PMID: 33380074 DOI: 10.1063/5.0028126] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Abstract
Simulation of electronic dynamics in realistically large molecular systems is a demanding task that has not yet achieved the same level of quantitative prediction already realized for its static counterpart. This is particularly true for processes occurring beyond the Born-Oppenheimer regime. Non-adiabatic molecular dynamics (NAMD) simulations suffer from two convoluted sources of error: numerical algorithms for dynamics and electronic structure calculations. While the former has gained increasing attention, particularly addressing the validity of ad hoc methodologies, the effect of the latter remains relatively unexplored. Indeed, the required accuracy for electronic structure calculations to reach quantitative agreement with experiment in dynamics may be even more strict than that required for static simulations. Here, we address this issue by modeling the electronic energy transfer in a donor-acceptor-donor (D-A-D) molecular light harvesting system using fewest switches surface hopping NAMD simulations. In the studied system, time-resolved experimental measurements deliver complete information on spectra and energy transfer rates. Subsequent modeling shows that the calculated electronic transition energies are "sufficiently good" to reproduce experimental spectra but produce over an order of magnitude error in simulated dynamical rates. We further perform simulations using artificially shifted energy gaps to investigate the complex relationship between transition energies and modeled dynamics to understand factors affecting non-radiative relaxation and energy transfer rates.
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Affiliation(s)
- Victor M Freixas
- Universidad Nacional de Quilmes/CONICET, Roque Saenz Peña 352, B1876BXD Bernal, Argentina
| | - Tammie Nelson
- Physics and Chemistry of Materials, Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | | | - Parmeet Nijjar
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-1062, USA
| | - Alexander Mikhailovsky
- Department of Chemistry and Biochemistry, Center for Polymers and Organic Solids, University of California Santa Barbara, Santa Barbara, California 93106, USA
| | - Cheng Zhou
- Department of Chemistry, National University of Singapore, Singapore 117543, Singapore
| | | | - Guillermo C Bazan
- Department of Chemistry and Biochemistry, Center for Polymers and Organic Solids, University of California Santa Barbara, Santa Barbara, California 93106, USA
| | - Sergei Tretiak
- Physics and Chemistry of Materials, Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
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Smith B, Akimov AV. Modeling nonadiabatic dynamics in condensed matter materials: some recent advances and applications. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2020; 32:073001. [PMID: 31661681 DOI: 10.1088/1361-648x/ab5246] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
This review focuses on recent developments in the field of nonadiabatic molecular dynamics (NA-MD), with particular attention given to condensed-matter systems. NA-MD simulations for small molecular systems can be performed using high-level electronic structure (ES) calculations, methods accounting for the quantization of nuclear motion, and using fewer approximations in the dynamical methodology itself. Modeling condensed-matter systems imposes many limitations on various aspects of NA-MD computations, requiring approximations at various levels of theory-from the ES, to the ways in which the coupling of electrons and nuclei are accounted for. Nonetheless, the approximate treatment of NA-MD in condensed-phase materials has gained a spin lately in many applied studies. A number of advancements of the methodology and computational tools have been undertaken, including general-purpose methods, as well as those tailored to nanoscale and condensed matter systems. This review summarizes such methodological and software developments, puts them into the broader context of existing approaches, and highlights some of the challenges that remain to be solved.
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Affiliation(s)
- Brendan Smith
- Department of Chemistry, University at Buffalo, The State University of New York, Buffalo, New York 14260-3000, United States of America
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Nelson TR, White AJ, Bjorgaard JA, Sifain AE, Zhang Y, Nebgen B, Fernandez-Alberti S, Mozyrsky D, Roitberg AE, Tretiak S. Non-adiabatic Excited-State Molecular Dynamics: Theory and Applications for Modeling Photophysics in Extended Molecular Materials. Chem Rev 2020; 120:2215-2287. [PMID: 32040312 DOI: 10.1021/acs.chemrev.9b00447] [Citation(s) in RCA: 179] [Impact Index Per Article: 44.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Optically active molecular materials, such as organic conjugated polymers and biological systems, are characterized by strong coupling between electronic and vibrational degrees of freedom. Typically, simulations must go beyond the Born-Oppenheimer approximation to account for non-adiabatic coupling between excited states. Indeed, non-adiabatic dynamics is commonly associated with exciton dynamics and photophysics involving charge and energy transfer, as well as exciton dissociation and charge recombination. Understanding the photoinduced dynamics in such materials is vital to providing an accurate description of exciton formation, evolution, and decay. This interdisciplinary field has matured significantly over the past decades. Formulation of new theoretical frameworks, development of more efficient and accurate computational algorithms, and evolution of high-performance computer hardware has extended these simulations to very large molecular systems with hundreds of atoms, including numerous studies of organic semiconductors and biomolecules. In this Review, we will describe recent theoretical advances including treatment of electronic decoherence in surface-hopping methods, the role of solvent effects, trivial unavoided crossings, analysis of data based on transition densities, and efficient computational implementations of these numerical methods. We also emphasize newly developed semiclassical approaches, based on the Gaussian approximation, which retain phase and width information to account for significant decoherence and interference effects while maintaining the high efficiency of surface-hopping approaches. The above developments have been employed to successfully describe photophysics in a variety of molecular materials.
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Affiliation(s)
- Tammie R Nelson
- Theoretical Division , Los Alamos National Laboratory , Los Alamos , New Mexico 87545 , United States
| | - Alexander J White
- Theoretical Division , Los Alamos National Laboratory , Los Alamos , New Mexico 87545 , United States
| | - Josiah A Bjorgaard
- Theoretical Division , Los Alamos National Laboratory , Los Alamos , New Mexico 87545 , United States
| | - Andrew E Sifain
- Theoretical Division , Los Alamos National Laboratory , Los Alamos , New Mexico 87545 , United States.,U.S. Army Research Laboratory , Aberdeen Proving Ground , Maryland 21005 , United States
| | - Yu Zhang
- Theoretical Division , Los Alamos National Laboratory , Los Alamos , New Mexico 87545 , United States
| | - Benjamin Nebgen
- Theoretical Division , Los Alamos National Laboratory , Los Alamos , New Mexico 87545 , United States
| | | | - Dmitry Mozyrsky
- Theoretical Division , Los Alamos National Laboratory , Los Alamos , New Mexico 87545 , United States
| | - Adrian E Roitberg
- Department of Chemistry , University of Florida , Gainesville , Florida 32611 , United States
| | - Sergei Tretiak
- Theoretical Division , Los Alamos National Laboratory , Los Alamos , New Mexico 87545 , United States
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Sifain AE, Gifford BJ, Gao DW, Lystrom L, Nelson TR, Tretiak S. NEXMD Modeling of Photoisomerization Dynamics of 4-Styrylquinoline. J Phys Chem A 2018; 122:9403-9411. [DOI: 10.1021/acs.jpca.8b09103] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Andrew E. Sifain
- Department of Physics and Astronomy, University of Southern California, Los Angeles, California 90089-0485, United States
- Theoretical Division and Center for Nonlinear Studies, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Brendan J. Gifford
- Theoretical Division and Center for Nonlinear Studies, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - David W. Gao
- Theoretical Division and Center for Nonlinear Studies, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
- Los Alamos High School, Los Alamos, New Mexico 87544, United States
| | - Levi Lystrom
- Theoretical Division and Center for Nonlinear Studies, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
- Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58108, United States
| | - Tammie R. Nelson
- Theoretical Division and Center for Nonlinear Studies, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Sergei Tretiak
- Theoretical Division and Center for Nonlinear Studies, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
- Center for Integrated Nanotechnologies, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
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Lystrom L, Zhang Y, Tretiak S, Nelson T. Site-Specific Photodecomposition in Conjugated Energetic Materials. J Phys Chem A 2018; 122:6055-6061. [DOI: 10.1021/acs.jpca.8b04381] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Levi Lystrom
- Theoretical Division, Physics and Chemistry of Materials (T-1), Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
- Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58108-6050, United States
| | - Yu Zhang
- Theoretical Division, Physics and Chemistry of Materials (T-1), Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Sergei Tretiak
- Theoretical Division, Physics and Chemistry of Materials (T-1), Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Tammie Nelson
- Theoretical Division, Physics and Chemistry of Materials (T-1), Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
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Sifain AE, Bjorgaard JA, Nelson TR, Nebgen BT, White AJ, Gifford BJ, Gao DW, Prezhdo OV, Fernandez-Alberti S, Roitberg AE, Tretiak S. Photoexcited Nonadiabatic Dynamics of Solvated Push–Pull π-Conjugated Oligomers with the NEXMD Software. J Chem Theory Comput 2018; 14:3955-3966. [DOI: 10.1021/acs.jctc.8b00103] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | | | | | | | | | - Brendan J. Gifford
- Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58108, United States
| | - David W. Gao
- Los Alamos High School, Los Alamos, New Mexico 87544, United States
| | | | | | - Adrian E. Roitberg
- Department of Chemistry, University of Florida, Gainesville, Florida 32611, United States
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