1
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Wang L, Tricard N, Chen Z, Deng S. Progress in computational methods and mechanistic insights on the growth of carbon nanotubes. NANOSCALE 2025. [PMID: 40275725 DOI: 10.1039/d4nr05487c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/26/2025]
Abstract
Carbon nanotubes (CNTs), as a promising nanomaterial with broad applications across various fields, are continuously attracting significant research attention. Despite substantial progress in understanding their growth mechanisms, synthesis methods, and post-processing techniques, two major goals remain challenging: achieving property-targeted growth and efficient mass production. Recent advancements in computational methods driven by increased computational resources, the development of platforms, and the refinement of theoretical models, have significantly deepened our understanding of the mechanisms underlying CNT growth. This review aims to comprehensively examine the latest computational techniques that shed light on various aspects of CNT synthesis. The first part of this review focuses on progress in computational methods. Beginning with atomistic simulation approaches, we introduce the fundamentals and advancements in density functional theory (DFT), molecular dynamics (MD) simulations, and kinetic Monte Carlo (kMC) simulations. We discuss the applicability and limitations of each method in studying mechanisms of CNT growth. Then, the focus shifts to multiscale modeling approaches, where we demonstrate the coupling of atomic-scale simulations with reactor-scale multiphase flow models. Given that CNT growth inherently spans multiple temporal and spatial scales, the development and application of multiscale modeling techniques are poised to become a central focus of future computational research in this field. Furthermore, this review emphasizes the growing role played by machine learning in CNT growth research. Compared with traditional physics-based simulation methods, data-driven machine learning approaches have rapidly emerged in recent years, revolutionizing research paradigms from molecular simulation to experimental design. In the second part of this review, we highlight the latest advancements in CNT growth mechanisms and synthesis methods achieved through computational techniques. These include novel findings across fundamental growth stages, i.e., from nucleation to elongation and ultimately termination. We also examine the dynamic behaviors of catalyst nanoparticles and chirality-controlled growth processes, emphasizing how these insights contribute to advancing the field. Finally, in the concluding section, we propose future directions for advancements of computational approaches toward deeper understanding of CNT growth mechanisms and better support of CNT manufacturing.
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Affiliation(s)
- Linzheng Wang
- Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, 02139, MA, USA.
| | - Nicolas Tricard
- Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, 02139, MA, USA.
| | - Zituo Chen
- Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, 02139, MA, USA.
| | - Sili Deng
- Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, 02139, MA, USA.
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2
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Prats H, Stamatakis M. First-Principles Kinetic Monte Carlo Simulations for Single-Cluster Catalysis: Study of CO 2 and CH 4 Conversion on Pt/HfC. ACS Catal 2025; 15:2904-2915. [PMID: 40013251 PMCID: PMC11851442 DOI: 10.1021/acscatal.4c07877] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2024] [Revised: 01/25/2025] [Accepted: 01/27/2025] [Indexed: 02/28/2025]
Abstract
The deposition of small transition metal (TM) clusters on transition metal carbides (TMC) gives rise to bifunctional catalysts with multiple active sites. This family of single-cluster catalysts (SCCs) offers exciting opportunities for enabling a wider range of chemical reactions owing to their strong metal-support interactions, which drastically modify the catalytic properties of the supported metal atoms. In this work, we use first-principles Kinetic Monte Carlo (KMC) simulations to investigate the conversion of CO2 and CH4 on Pt/HfC, which was identified as the most promising TM/TMC combination in a previous DFT-based high-throughput screening study. We analyze the interplay between the Pt clusters and the HfC support, evaluating the catalytic activity, selectivity, and adlayer composition across a broad range of operating conditions (p A , p B , and T) and Pt loadings. This study evaluates five different industrial processes, including the dry reforming (DRM), steam reforming (SRM), and partial oxidation (POM) of methane, as well as the water-gas shift (WGS) reaction and its reverse (RWGS). Our results demonstrate that the deposition of Pt clusters on HfC systematically enhances the catalytic performance, even at a Pt loading as low as ∼0.02 ML. This work illustrates the extensive catalytic benefits of SCCs and highlights the importance of considering diffusion steps and lateral interactions in kinetic modeling.
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Affiliation(s)
- Hector Prats
- Department
of Chemistry, Physical & Theoretical Chemistry Laboratory, University of Oxford, South Parks Road, Oxford OX1 3QZ, U.K.
- Institute
of Materials Chemistry, Technische Universität
Wien, 1060 Vienna, Austria
| | - Michail Stamatakis
- Department
of Chemistry, Inorganic Chemistry Lab, University
of Oxford, Oxford OX1 3QR, U.K.
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3
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Kreitz B, Gusmão GS, Nai D, Sahoo SJ, Peterson AA, Bross DH, Goldsmith CF, Medford AJ. Unifying thermochemistry concepts in computational heterogeneous catalysis. Chem Soc Rev 2025; 54:560-589. [PMID: 39611700 DOI: 10.1039/d4cs00768a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2024]
Abstract
Thermophysical properties of adsorbates and gas-phase species define the free energy landscape of heterogeneously catalyzed processes and are pivotal for an atomistic understanding of the catalyst performance. These thermophysical properties, such as the free energy or the enthalpy, are typically derived from density functional theory (DFT) calculations. Enthalpies are species-interdependent properties that are only meaningful when referenced to other species. The widespread use of DFT has led to a proliferation of new energetic data in the literature and databases. However, there is a lack of consistency in how DFT data is referenced and how the associated enthalpies or free energies are stored and reported, leading to challenges in reproducing or utilizing the results of prior work. Additionally, DFT suffers from exchange-correlation errors that often require corrections to align the data with other global thermochemical networks, which are not always clearly documented or explained. In this review, we introduce a set of consistent terminology and definitions, review existing approaches, and unify the techniques using the framework of linear algebra. This set of terminology and tools facilitates the correction and alignment of energies between different data formats and sources, promoting the sharing and reuse of ab initio data. Standardization of thermochemistry concepts in computational heterogeneous catalysis reduces computational cost and enhances fundamental understanding of catalytic processes, which will accelerate the computational design of optimally performing catalysts.
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Affiliation(s)
- Bjarne Kreitz
- School of Engineering, Brown University, Providence, Rhode Island 02912, USA.
| | - Gabriel S Gusmão
- School of Chemical and Biomolecular Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, USA.
| | - Dingqi Nai
- School of Chemical and Biomolecular Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, USA.
| | - Sushree Jagriti Sahoo
- School of Chemical and Biomolecular Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, USA.
| | - Andrew A Peterson
- School of Engineering, Brown University, Providence, Rhode Island 02912, USA.
| | - David H Bross
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, USA
| | | | - Andrew J Medford
- School of Chemical and Biomolecular Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, USA.
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4
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Jiang Y, Huang Y, Guo H, Zhu H, Chen ZX. Comparative simulations of methanol steam reforming on PdZn alloy using kinetic Monte Carlo and mean-field microkinetic model. J Chem Phys 2024; 161:024701. [PMID: 38980094 DOI: 10.1063/5.0206139] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Accepted: 06/19/2024] [Indexed: 07/10/2024] Open
Abstract
Methanol steam reforming (MSR) is an attractive route for producing clean energy hydrogen. PdZn alloys are extensively studied as potential MSR catalysts for their stability and high CO2 selectivity. Here, we investigated the reaction mechanism using density functional calculations, mean-field microkinetic modeling (MF-MKM), and kinetic Monte Carlo (kMC) simulations. To overcome the over-underestimation of CO2 selectivity by log-kMC, an ads-kMC algorithm is proposed in which the adsorption/desorption rate constants were reduced under certain requirements and the diffusion process was treated by redistributing surface species each time an event occured. The simulations show that the dominant pathway to CO2 at low temperatures is CH3OH → CH3O → CH2O → H2COOH → H2COO → HCOO → CO2. The ads-kMC predicted OH coverage is 2-3 times that of MF-MKM, while they produce similar coverage for other species. Analyses indicate that surface OH promotes the dehydrogenation of CH3OH, CH3O, and H2COOH significantly and plays a key role in the MSR process. The dissociation of water/methanol is the most important rate-limiting/rate-inhibiting step. The CO2 selectivity obtained by the two methods is close to each other and consistent with the experimental trend with temperature. Generally, the ads-kMC results agree with the MF-MKM ones, supporting the previous finding that kMC and MF-MKM predict similar results if the diffusion is very fast and adsorbate interactions are neglected. The present study sheds light on the MSR process on PdZn alloys, and the proposed scheme to overcome the stiff problems in kMC simulations is worthy of being extended to other systems.
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Affiliation(s)
- Yongjie Jiang
- Institute of Theoretical and Computational Chemistry, Key Laboratory of Mesoscopic Chemistry of MOE, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Yucheng Huang
- College of Chemistry and Material Science, Key Laboratory of Functional Molecular Solids, Ministry of Education, Anhui Normal University, Wuhu 241000, China
| | - Hui Guo
- Institute of Theoretical and Computational Chemistry, Key Laboratory of Mesoscopic Chemistry of MOE, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Hong Zhu
- Institute of Theoretical and Computational Chemistry, Key Laboratory of Mesoscopic Chemistry of MOE, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Zhao-Xu Chen
- Institute of Theoretical and Computational Chemistry, Key Laboratory of Mesoscopic Chemistry of MOE, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
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5
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Li XY, Ou P, Duan X, Ying L, Meng J, Zhu B, Gao Y. Dynamic Active Sites In Situ Formed in Metal Nanoparticle Reshaping under Reaction Conditions. JACS AU 2024; 4:1892-1900. [PMID: 38818067 PMCID: PMC11134379 DOI: 10.1021/jacsau.4c00088] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Revised: 04/11/2024] [Accepted: 04/12/2024] [Indexed: 06/01/2024]
Abstract
Understanding the nonequilibrium transformation of nanocatalysts under reaction conditions is important because metastable atomic structures may be created during the process, which offers unique activities in reactions. Although reshaping of metal nanoparticles (NPs) under reaction conditions has been widely recognized, the dynamic reshaping process has been less studied at the atomic scale. Here, we develop an atomistic kinetic Monte Carlo model to simulate the complete reshaping process of Pt nanoparticles in a CO environment and reveal the in situ formation of atomic clusters on the NP surface, a new type of active site beyond conventional understanding, boosting the reactivities in the CO oxidation reaction. Interestingly, highly active peninsula and inactive island clusters both form on the (111) facets and interchange in varying states of dynamic equilibrium, which influences the catalytic activities significantly. This study provides new fundamental knowledge of nanocatalysis and new guidance for the rational design of nanocatalysts.
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Affiliation(s)
- Xiao-Yan Li
- Shanghai
Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China
- Department
of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Pengfei Ou
- Department
of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Xinyi Duan
- Shanghai
Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China
| | - Lei Ying
- Shanghai
Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China
| | - Jun Meng
- Shanghai
Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China
| | - Beien Zhu
- Photon
Science Research Center for Carbon Dioxide, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201210, China
| | - Yi Gao
- Photon
Science Research Center for Carbon Dioxide, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201210, China
- Key
Laboratory of Low-Carbon Conversion Science & Engineering, Shanghai Advanced Research Institute, Chinese Academy
of Sciences, Shanghai 201210, China
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6
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Wang M, Langer M, Altieri R, Crisci M, Osella S, Gatti T. Two-Dimensional Layered Heterojunctions for Photoelectrocatalysis. ACS NANO 2024; 18:9245-9284. [PMID: 38502101 DOI: 10.1021/acsnano.3c12274] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/20/2024]
Abstract
Two-dimensional (2D) layered nanomaterial heterostructures, arising from the combination of 2D materials with other low-dimensional species, feature a large surface area to volume ratio, which provides a high density of active sites for catalytic applications and for (photo)electrocatalysis (PEC). Meanwhile, their electronic band structure and high electrical conductivity enable efficient charge transfer (CT) between the active material and the substrate, which is essential for catalytic activity. In recent years, researchers have demonstrated the potential of a range of 2D material interfaces, such as graphene, graphitic carbon nitride (g-C3N4), metal chalcogenides (MCs), and MXenes, for (photo)electrocatalytic applications. For instance, MCs such as MoS2 and WS2 have shown excellent catalytic activity for hydrogen evolution, while graphene and MXenes have been used for the reduction of carbon dioxide to higher value chemicals. However, despite their great potential, there are still major challenges that need to be addressed to fully realize the potential of 2D materials for PEC. For example, their stability under harsh reaction conditions, as well as their scalability for large-scale production are important factors to be considered. Generating heterojunctions (HJs) by combining 2D layered structures with other nanomaterials is a promising method to improve the photoelectrocatalytic properties of the former. In this review, we inspect thoroughly the recent literature, to demonstrate the significant potential that arises from utilizing 2D layered heterostructures in PEC processes across a broad spectrum of applications, from energy conversion and storage to environmental remediation. With the ongoing research and development, it is likely that the potential of these materials will be fully expressed in the near future.
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Affiliation(s)
- Mengjiao Wang
- Department of Applied Science and Technology, Politecnico di Torino, Torino, 10129, Italy
| | - Michal Langer
- Chemical and Biological Systems Simulation Lab, Centre of New Technologies, University of Warsaw, Warsaw, 02097, Poland
| | - Roberto Altieri
- Institute of Physical Chemistry and Center for Materials Research (LaMa), Justus Liebig University, Giessen, 35392, Germany
| | - Matteo Crisci
- Institute of Physical Chemistry and Center for Materials Research (LaMa), Justus Liebig University, Giessen, 35392, Germany
| | - Silvio Osella
- Chemical and Biological Systems Simulation Lab, Centre of New Technologies, University of Warsaw, Warsaw, 02097, Poland
| | - Teresa Gatti
- Department of Applied Science and Technology, Politecnico di Torino, Torino, 10129, Italy
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7
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Werkovits A, Hollweger SB, Niederreiter M, Risse T, Cartus JJ, Sterrer M, Matera S, Hofmann OT. Kinetic Trapping of Charge-Transfer Molecules at Metal Interfaces. THE JOURNAL OF PHYSICAL CHEMISTRY. C, NANOMATERIALS AND INTERFACES 2024; 128:3082-3089. [PMID: 38414835 PMCID: PMC10895664 DOI: 10.1021/acs.jpcc.3c08262] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Revised: 01/23/2024] [Accepted: 01/24/2024] [Indexed: 02/29/2024]
Abstract
Despite the common expectation that conjugated organic molecules on metals adsorb in a flat-lying layer, several recent studies have found coverage-dependent transitions to upright-standing phases, which exhibit notably different physical properties. In this work, we argue that from an energetic perspective, thermodynamically stable upright-standing phases may be more common than hitherto thought. However, for kinetic reasons, this phase may often not be observed experimentally. Using first-principles kinetic Monte Carlo simulations, we find that the structure with lower molecular density is (almost) always formed first, reminiscent of Ostwald's rule of stages. The phase transitions to the upright-standing phase are likely to be kinetically hindered under the conditions typically used in surface science. The simulation results are experimentally confirmed for the adsorption of tetracyanoethylene on Cu(111) using infrared and X-ray photoemission spectroscopy. Investigating both the role of the growth conditions and the energetics of the interface, we find that the time for the phase transition is determined mostly by the deposition rate and, thus, is mostly independent of the nature of the molecule.
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Affiliation(s)
- Anna Werkovits
- Institute
of Solid State Physics, Graz University of Technology, Petersgasse 16/II, 8010 Graz, Austria
| | - Simon B. Hollweger
- Institute
of Solid State Physics, Graz University of Technology, Petersgasse 16/II, 8010 Graz, Austria
| | - Max Niederreiter
- Institute
of Physics, University of Graz, Universitätsplatz 5, 8010 Graz, Austria
| | - Thomas Risse
- Institut
für Chemie und Biochemie, Freie Universität Berlin, Arminallee 22, 14195 Berlin, Germany
| | - Johannes J. Cartus
- Institute
of Solid State Physics, Graz University of Technology, Petersgasse 16/II, 8010 Graz, Austria
| | - Martin Sterrer
- Institute
of Physics, University of Graz, Universitätsplatz 5, 8010 Graz, Austria
| | - Sebastian Matera
- Theory
Department, Fritz Haber Institute of the
MPG, Faradayweg 4-6, 14195 Berlin-Dahlem, Germany
| | - Oliver T. Hofmann
- Institute
of Solid State Physics, Graz University of Technology, Petersgasse 16/II, 8010 Graz, Austria
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8
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Kanchan DR, Banerjee A. Linear Scaling Relationships for Furan Hydrodeoxygenation over Transition Metal and Bimetallic Surfaces. CHEMSUSCHEM 2023; 16:e202300491. [PMID: 37314827 DOI: 10.1002/cssc.202300491] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Revised: 05/29/2023] [Accepted: 06/13/2023] [Indexed: 06/15/2023]
Abstract
Brønsted-Evans-Polanyi (BEP) and transition-state-scaling (TSS) relationships have become valuable tools for the rational design of catalysts for complex reactions like hydrodeoxygenation (HDO) of bio-oil (containing heterocyclic and homocyclic molecules). In this work, BEP and TSS relationships are developed for all the elementary steps of furan activation (C and O hydrogenation and CHx -OHy scission, for both ring and open-ring intermediates) to oxygenates, ring-saturated compounds and deoxygenated products on the most stable facets of Ni, Co, Rh, Ru, Pt, Pd, Fe and Ir surfaces using Density Functional Theory (DFT) calculations. Furan ring opening barriers were found to be facile and strongly dependent on carbon and oxygen binding strength on the investigated surfaces. Our calculations suggest linear chain oxygenates form on Ir, Pt, Pd and Rh surfaces due to their low hydrogenation and high CHx -OHy scission barriers, while deoxygenated linear products are favoured on Fe and Ni surfaces due to their low CHx -OHy scission and moderate hydrogenation barriers. Bimetallic alloy catalysts were also screened for their potential HDO activity and PtFe catalysts were found to significantly lower the ring opening and deoxygenation barriers relative to the corresponding pure metals. The developed BEPs for monometallic surfaces can be extended to estimate the barriers on bimetallic surfaces for ring opening and ring hydrogenation reactions but fails to predict the barriers for open-ring activation reactions due to the change in transition state binding sites on the bimetallic surface. The obtained BEP and TSS relationships can be used to develop microkinetic models for facilitating accelerated catalyst discovery for HDO.
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Affiliation(s)
- Dipika Rajendra Kanchan
- Department of Chemical Engineering, Indian Institute of Technology Ropar, Rupnagar, Punjab, 140001, India
| | - Arghya Banerjee
- Department of Chemical Engineering, Indian Institute of Technology Ropar, Rupnagar, Punjab, 140001, India
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9
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Yadavalli SS, Jones G, Benson RL, Stamatakis M. Assessing the Impact of Adlayer Description Fidelity on Theoretical Predictions of Coking on Ni(111) at Steam Reforming Conditions. THE JOURNAL OF PHYSICAL CHEMISTRY. C, NANOMATERIALS AND INTERFACES 2023; 127:8591-8606. [PMID: 37197383 PMCID: PMC10184169 DOI: 10.1021/acs.jpcc.3c02323] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/07/2023] [Revised: 04/13/2023] [Indexed: 05/19/2023]
Abstract
Methane steam reforming is an important industrial process for hydrogen production, employing Ni as a low-cost, highly active catalyst, which, however, suffers from coking due to methane cracking. Coking is the accumulation of a stable poison over time, occurring at high temperatures; thus, to a first approximation, it can be treated as a thermodynamic problem. In this work, we developed an Ab initio kinetic Monte Carlo (KMC) model for methane cracking on Ni(111) at steam reforming conditions. The model captures C-H activation kinetics in detail, while graphene sheet formation is described at the level of thermodynamics, to obtain insights into the "terminal (poisoned) state" of graphene/coke within reasonable computational times. We used cluster expansions (CEs) of progressively higher fidelity to systematically assess the influence of effective cluster interactions between adsorbed or covalently bonded C and CH species on the "terminal state" morphology. Moreover, we compared the predictions of KMC models incorporating these CEs into mean-field microkinetic models in a consistent manner. The models show that the "terminal state" changes significantly with the level of fidelity of the CEs. Furthermore, high-fidelity simulations predict C-CH island/rings that are largely disconnected at low temperatures but completely encapsulate the Ni(111) surface at high temperatures.
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Affiliation(s)
- Sai Sharath Yadavalli
- Thomas
Young Centre and Department of Chemical Engineering, University College London, Roberts Building, Torrington Place, London WC1E 7JE, U.K.
| | - Glenn Jones
- Johnson
Matthey Technology Centre, Sonning Common, Reading RG4 9NH, U.K.
| | - Raz L. Benson
- Thomas
Young Centre and Department of Chemical Engineering, University College London, Roberts Building, Torrington Place, London WC1E 7JE, U.K.
| | - Michail Stamatakis
- Thomas
Young Centre and Department of Chemical Engineering, University College London, Roberts Building, Torrington Place, London WC1E 7JE, U.K.
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10
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Razdan NK, Lin TC, Bhan A. Concepts Relevant for the Kinetic Analysis of Reversible Reaction Systems. Chem Rev 2023; 123:2950-3006. [PMID: 36802557 DOI: 10.1021/acs.chemrev.2c00510] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/23/2023]
Abstract
The net rate of a reversible chemical reaction is the difference between unidirectional rates of traversal along forward and reverse reaction paths. In a multistep reaction sequence, the forward and reverse trajectories, in general, are not the microscopic reverse of one another; rather, each unidirectional route is comprised of distinct rate-controlling steps, intermediates, and transition states. Consequently, traditional descriptors of rate (e.g., reaction orders) do not reflect intrinsic kinetic information but instead conflate unidirectional contributions determined by (i) the microscopic occurrence of forward/reverse reactions (i.e., unidirectional kinetics) and (ii) the reversibility of reaction (i.e., nonequilibrium thermodynamics). This review aims to provide a comprehensive resource of analytical and conceptual tools which deconvolute the contributions of reaction kinetics and thermodynamics to disambiguate unidirectional reaction trajectories and precisely identify rate- and reversibility-controlling molecular species and steps in reversible reaction systems. The extrication of mechanistic and kinetic information from bidirectional reactions is accomplished through equation-based formalisms (e.g., De Donder relations) grounded in principles of thermodynamics and interpreted in the context of theories of chemical kinetics developed in the past 25 years. The aggregate of mathematical formalisms detailed herein is general to thermochemical and electrochemical reactions and encapsulates a diverse body of scientific literature encompassing chemical physics, thermodynamics, chemical kinetics, catalysis, and kinetic modeling.
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Affiliation(s)
- Neil K Razdan
- Department of Chemical Engineering and Materials Science, University of Minnesota─Twin Cities, 421 Washington Avenue SE, Minneapolis, Minnesota 55455, United States
| | - Ting C Lin
- Department of Chemical Engineering and Materials Science, University of Minnesota─Twin Cities, 421 Washington Avenue SE, Minneapolis, Minnesota 55455, United States
| | - Aditya Bhan
- Department of Chemical Engineering and Materials Science, University of Minnesota─Twin Cities, 421 Washington Avenue SE, Minneapolis, Minnesota 55455, United States
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11
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Wang L, Wang B, Fan M, Ling L, Zhang R. Unraveling the Structure and Composition Sensitivity of Transition Metal Phosphide toward Catalytic Performance of C2H2 Semi-Hydrogenation. J Catal 2022. [DOI: 10.1016/j.jcat.2022.10.016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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12
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Deimel M, Prats H, Seibt M, Reuter K, Andersen M. Selectivity Trends and Role of Adsorbate–Adsorbate Interactions in CO Hydrogenation on Rhodium Catalysts. ACS Catal 2022. [DOI: 10.1021/acscatal.2c02353] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Martin Deimel
- Chair for Theoretical Chemistry and Catalysis Research Center, Technische Universität München, Lichtenbergstraße 4, 85747 Garching, Germany
| | - Hector Prats
- Department of Chemical Engineering, University College London, Roberts Building, Torrington Place, London WC1E 7JE, UK
| | - Michael Seibt
- Chair for Theoretical Chemistry and Catalysis Research Center, Technische Universität München, Lichtenbergstraße 4, 85747 Garching, Germany
| | - Karsten Reuter
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
| | - Mie Andersen
- Aarhus Institute of Advanced Studies, Aarhus University, 8000 Aarhus C, Denmark
- Center for Interstellar Catalysis, Department of Physics and Astronomy, Aarhus University, 8000 Aarhus C, Denmark
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13
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Gößwein M, Kaiser W, Gagliardi A. Local Temporal Acceleration Scheme to Couple Transport and Reaction Dynamics in Kinetic Monte Carlo Models of Electrochemical Systems. J Chem Theory Comput 2022; 18:2749-2763. [DOI: 10.1021/acs.jctc.1c01010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Manuel Gößwein
- Department of Electrical and Computer Engineering, Technical University of Munich, Karlstraße 45, 80333 Munich, Germany
| | - Waldemar Kaiser
- Department of Electrical and Computer Engineering, Technical University of Munich, Karlstraße 45, 80333 Munich, Germany
- Computational Laboratory for Hybrid/Organic Photovoltaics (CLHYO), Istituto CNR di Scienze e Tecnologie Chimiche “Giulio Natta” (CNR-SCITEC), 06123 Perugia, Italy
| | - Alessio Gagliardi
- Department of Electrical and Computer Engineering, Technical University of Munich, Karlstraße 45, 80333 Munich, Germany
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14
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15
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Pineda M, Stamatakis M. Kinetic Monte Carlo simulations for heterogeneous catalysis: Fundamentals, current status, and challenges. J Chem Phys 2022; 156:120902. [DOI: 10.1063/5.0083251] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Abstract
Kinetic Monte Carlo (KMC) simulations in combination with first-principles (1p)-based calculations are rapidly becoming the gold-standard computational framework for bridging the gap between the wide range of length scales and time scales over which heterogeneous catalysis unfolds. 1p-KMC simulations provide accurate insights into reactions over surfaces, a vital step toward the rational design of novel catalysts. In this Perspective, we briefly outline basic principles, computational challenges, successful applications, as well as future directions and opportunities of this promising and ever more popular kinetic modeling approach.
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Affiliation(s)
- M. Pineda
- Thomas Young Centre and Department of Chemical Engineering, University College London, Roberts Building, Torrington Place, London WC1E 7JE, United Kingdom
| | - M. Stamatakis
- Thomas Young Centre and Department of Chemical Engineering, University College London, Roberts Building, Torrington Place, London WC1E 7JE, United Kingdom
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16
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Cheula R, Maestri M. Nature and identity of the active site via structure-dependent microkinetic modeling: An application to WGS and reverse WGS reactions on Rh. Catal Today 2022. [DOI: 10.1016/j.cattod.2021.05.016] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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17
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Evaluating the benefits of kinetic Monte Carlo and microkinetic modeling for catalyst design studies in the presence of lateral interactions. Catal Today 2022. [DOI: 10.1016/j.cattod.2021.03.010] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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18
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Streibel V, Aljama HA, Yang AC, Choksi TS, Sánchez-Carrera RS, Schäfer A, Li Y, Cargnello M, Abild-Pedersen F. Microkinetic Modeling of Propene Combustion on a Stepped, Metallic Palladium Surface and the Importance of Oxygen Coverage. ACS Catal 2022. [DOI: 10.1021/acscatal.1c03699] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Verena Streibel
- Department of Chemical Engineering, Stanford University, 443 Via Ortega, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, SUNCAT Center for Interface Science and Catalysis, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Hassan A. Aljama
- Department of Chemical Engineering, Stanford University, 443 Via Ortega, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, SUNCAT Center for Interface Science and Catalysis, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - An-Chih Yang
- Department of Chemical Engineering, Stanford University, 443 Via Ortega, Stanford, California 94305, United States
| | - Tej S. Choksi
- Department of Chemical Engineering, Stanford University, 443 Via Ortega, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, SUNCAT Center for Interface Science and Catalysis, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | | | - Ansgar Schäfer
- BASF SE, Quantum Chemistry, Carl-Bosch-Straße 38, 67056 Ludwigshafen, Germany
| | - Yuejin Li
- BASF Corporation, Environmental Catalysis R&D and Application, 25 Middlesex-Essex Turnpike, Iselin, New Jersey 08830, United States
| | - Matteo Cargnello
- Department of Chemical Engineering, Stanford University, 443 Via Ortega, Stanford, California 94305, United States
| | - Frank Abild-Pedersen
- SLAC National Accelerator Laboratory, SUNCAT Center for Interface Science and Catalysis, 2575 Sand Hill Road, Menlo Park, California 94025, United States
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19
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Pablo-García S, Sabadell-Rendón A, Saadun AJ, Morandi S, Pérez-Ramírez J, López N. Generalizing Performance Equations in Heterogeneous Catalysis from Hybrid Data and Statistical Learning. ACS Catal 2022. [DOI: 10.1021/acscatal.1c04345] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Sergio Pablo-García
- Institute of Chemical Research of Catalonia, The Barcelona Institute of Science and Technology ICIQ, Av. Països Catalans 16, 43007, Tarragona, Spain
| | - Albert Sabadell-Rendón
- Institute of Chemical Research of Catalonia, The Barcelona Institute of Science and Technology ICIQ, Av. Països Catalans 16, 43007, Tarragona, Spain
| | - Ali J. Saadun
- Institute for Chemical and Bioengineering, Department of Chemistry and Applied Biosciences, ETH Zurich, Vladimir-Prelog-Weg 1, 8093 Zürich, Switzerland
| | - Santiago Morandi
- Institute of Chemical Research of Catalonia, The Barcelona Institute of Science and Technology ICIQ, Av. Països Catalans 16, 43007, Tarragona, Spain
| | - Javier Pérez-Ramírez
- Institute for Chemical and Bioengineering, Department of Chemistry and Applied Biosciences, ETH Zurich, Vladimir-Prelog-Weg 1, 8093 Zürich, Switzerland
| | - Núria López
- Institute of Chemical Research of Catalonia, The Barcelona Institute of Science and Technology ICIQ, Av. Països Catalans 16, 43007, Tarragona, Spain
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20
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Razdan N, Bhan A. Catalytic site ensembles: A context to reexamine the Langmuir-Hinshelwood kinetic description. J Catal 2021. [DOI: 10.1016/j.jcat.2021.09.016] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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21
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Abstract
We demonstrate that the Langmuir-Hinshelwood formalism is an incomplete kinetic description and, in particular, that the Hinshelwood assumption (i.e., that adsorbates are randomly distributed on the surface) is inappropriate even in catalytic reactions as simple as A + A → A2 The Hinshelwood assumption results in miscounting of site pairs (e.g., A*-A*) and, consequently, in erroneous rates, reaction orders, and identification of rate-determining steps. The clustering and isolation of surface species unnoticed by the Langmuir-Hinshelwood model is rigorously accounted for by derivation of higher-order rate terms containing statistical factors specific to each site ensemble. Ensemble-specific statistical rate terms arise irrespective of and couple with lateral adsorbate interactions, are distinct for each elementary step including surface diffusion events (e.g., A* + * → * + A*), and provide physical insight obscured by the nonanalytical nature of the kinetic Monte Carlo (kMC) method-with which the higher-order formalism quantitatively agrees. The limitations of the Langmuir-Hinshelwood model are attributed to the incorrect assertion that the rate of an elementary step is the same with respect to each site ensemble. In actuality, each elementary step-including adsorbate diffusion-traverses through each ensemble with unique rate, reversibility, and kinetic-relevance to the overall reaction rate. Explicit kinetic description of ensemble-specific paths is key to the improvements of the higher-order formalism; enables quantification of ensemble-specific rate, reversibility, and degree of rate control of surface diffusion; and reveals that a single elementary step can, counter intuitively, be both equilibrated and rate determining.
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22
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Andersen M, Reuter K. Adsorption Enthalpies for Catalysis Modeling through Machine-Learned Descriptors. Acc Chem Res 2021; 54:2741-2749. [PMID: 34080415 DOI: 10.1021/acs.accounts.1c00153] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Heterogeneous catalysts are rather complex materials that come in many classes (e.g., metals, oxides, carbides) and shapes. At the same time, the interaction of the catalyst surface with even a relatively simple gas-phase environment such as syngas (CO and H2) may already produce a wide variety of reaction intermediates ranging from atoms to complex molecules. The starting point for creating predictive maps of, e.g., surface coverages or chemical activities of potential catalyst materials is the reliable prediction of adsorption enthalpies of all of these intermediates. For simple systems, direct density functional theory (DFT) calculations are currently the method of choice. However, a wider exploration of complex materials and reaction networks generally requires enthalpy predictions at lower computational cost.The use of machine learning (ML) and related techniques to make accurate and low-cost predictions of quantum-mechanical calculations has gained increasing attention lately. The employed approaches span from physically motivated models over hybrid physics-ΔML approaches to complete black-box methods such as deep neural networks. In recent works we have explored the possibilities for using a compressed sensing method (Sure Independence Screening and Sparsifying Operator, SISSO) to identify sparse (low-dimensional) descriptors for the prediction of adsorption enthalpies at various active-site motifs of metals and oxides. We start from a set of physically motivated primary features such as atomic acid/base properties, coordination numbers, or band moments and let the data and the compressed sensing method find the best algebraic combination of these features. Here we take this work as a starting point to categorize and compare recent ML-based approaches with a particular focus on model sparsity, data efficiency, and the level of physical insight that one can obtain from the model.Looking ahead, while many works to date have focused only on the mere prediction of databases of, e.g., adsorption enthalpies, there is also an emerging interest in our field to start using ML predictions to answer fundamental science questions about the functioning of heterogeneous catalysts or perhaps even to design better catalysts than we know today. This task is significantly simplified in works that make use of scaling-relation-based models (volcano curves), where the model outcome is determined by only one or two adsorption enthalpies and which consequently become the sole target for ML-based high-throughput screening or design. However, the availability of cheap ML energetics also allows going beyond scaling relations. On the basis of our own work in this direction, we will discuss the additional physical insight that can be achieved by integrating ML-based predictions with traditional catalysis modeling techniques from thermal and electrocatalysis, such as the computational hydrogen electrode and microkinetic modeling, as well as the challenges that lie ahead.
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Affiliation(s)
- Mie Andersen
- Aarhus Institute of Advanced Studies, Aarhus University, DK-8000 Aarhus C, Denmark
- Department of Physics and Astronomy - Center for Interstellar Catalysis, Aarhus University, DK-8000 Aarhus C, Denmark
- Chair for Theoretical Chemistry and Catalysis Research Center, Technische Universität München, Lichtenbergstr. 4, 85747 Garching, Germany
| | - Karsten Reuter
- Chair for Theoretical Chemistry and Catalysis Research Center, Technische Universität München, Lichtenbergstr. 4, 85747 Garching, Germany
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
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23
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Patel P, Wells RH, Kaphan DM, Delferro M, Skodje RT, Liu C. Computational Investigation of the Role of Active Site Heterogeneity for a Supported Organovanadium(III) Hydrogenation Catalyst. ACS Catal 2021. [DOI: 10.1021/acscatal.1c00688] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Prajay Patel
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439-4801, United States
| | - Robert H. Wells
- Department of Chemistry, University of Colorado Boulder, Boulder, Colorado 80309-0215, United States
| | - David M. Kaphan
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439-4801, United States
| | - Massimiliano Delferro
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439-4801, United States
| | - Rex T. Skodje
- Department of Chemistry, University of Colorado Boulder, Boulder, Colorado 80309-0215, United States
| | - Cong Liu
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439-4801, United States
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24
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Ke J, Wang YD, Wang CM. First-principles microkinetic simulations revealing the scaling relations and structure sensitivity of CO 2 hydrogenation to C 1 & C 2 oxygenates on Pd surfaces. Catal Sci Technol 2021. [DOI: 10.1039/d1cy00700a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
CO2 hydrogenation to alcohols and other oxygenates on Pd(211) and Pd(111) surfaces was studied by microkinetic modelling. Energy scaling relations on two surfaces were established. Activity plots as a function of reaction conditions were identified.
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Affiliation(s)
- Jun Ke
- State Key Laboratory of Green Chemical Engineering and Industrial Catalysis
- Sinopec Shanghai Research Institute of Petrochemical Technology
- Shanghai 201208
- China
| | - Yang-Dong Wang
- State Key Laboratory of Green Chemical Engineering and Industrial Catalysis
- Sinopec Shanghai Research Institute of Petrochemical Technology
- Shanghai 201208
- China
| | - Chuan-Ming Wang
- State Key Laboratory of Green Chemical Engineering and Industrial Catalysis
- Sinopec Shanghai Research Institute of Petrochemical Technology
- Shanghai 201208
- China
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25
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Kovačič Ž, Likozar B, Huš M. Photocatalytic CO2 Reduction: A Review of Ab Initio Mechanism, Kinetics, and Multiscale Modeling Simulations. ACS Catal 2020. [DOI: 10.1021/acscatal.0c02557] [Citation(s) in RCA: 79] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Žan Kovačič
- National Institute of Chemistry, Department of Chemical Reaction Engineering, Hajdrihova 19, SI-1001 Ljubljana, Slovenia, European Union
| | - Blaž Likozar
- National Institute of Chemistry, Department of Chemical Reaction Engineering, Hajdrihova 19, SI-1001 Ljubljana, Slovenia, European Union
| | - Matej Huš
- National Institute of Chemistry, Department of Chemical Reaction Engineering, Hajdrihova 19, SI-1001 Ljubljana, Slovenia, European Union
- Association for Technical Culture of Slovenia (ZOTKS), Zaloška 65, SI-1000 Ljubljana, Slovenia
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26
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Deimel M, Reuter K, Andersen M. Active Site Representation in First-Principles Microkinetic Models: Data-Enhanced Computational Screening for Improved Methanation Catalysts. ACS Catal 2020. [DOI: 10.1021/acscatal.0c04045] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Martin Deimel
- Chair for Theoretical Chemistry and Catalysis Research Center, Technische Universität München, Lichtenbergstr. 4, 85747 Garching, Germany
| | - Karsten Reuter
- Chair for Theoretical Chemistry and Catalysis Research Center, Technische Universität München, Lichtenbergstr. 4, 85747 Garching, Germany
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
| | - Mie Andersen
- Chair for Theoretical Chemistry and Catalysis Research Center, Technische Universität München, Lichtenbergstr. 4, 85747 Garching, Germany
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27
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Chen B, Xiong C, Jiang DE, Savara A. Ethanol Conversion over La 0.7Sr 0.3MnO 3–x(100): Autocatalysis, Adjacent O-Vacancies, Disproportionation, and Dehydrogenation. ACS Catal 2020. [DOI: 10.1021/acscatal.0c03241] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Bo Chen
- Chemical Science Division, Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, Tennessee 37831-6201, United States
| | | | | | - Aditya Savara
- Chemical Science Division, Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, Tennessee 37831-6201, United States
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28
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Ding C, Weng J, Shen T, Xu X. The enhanced extended phenomenological kinetics method to deal with timescale disparity problem among different reaction pathways. J Comput Chem 2020; 41:2115-2123. [PMID: 32618018 DOI: 10.1002/jcc.26374] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2020] [Revised: 05/29/2020] [Accepted: 06/02/2020] [Indexed: 11/10/2022]
Abstract
Kinetic Monte Carlo method can provide valuable mechanistic insights for catalytic systems. Nonetheless, it suffers from the notorious problem of timescale disparity due to the existence of the complex catalytic network that consists of fast events and slow events. Previously, we have proposed the extended phenomenological kinetics (XPK) method that effectively deals with the timescale disparity problem between diffusion and reaction. However, it remains a great challenge to simulate systems with timescale disparity among different reaction pathways, which is important when selectivity is the major concern. In this study, we implement the enhanced XPK method to address this problem. The new algorithm works by identifying states connected through fast transitions and compressing them into a "superstate" when the chosen states satisfy a local steadystate condition. This state compression algorithm simplifies the reaction network by concealing the fast transitions. The accuracy and efficiency of the algorithm are demonstrated by two model systems: selective catalytic hydrogenation and selective catalytic decomposition. The enhanced XPK method is expected to be beneficial to the kinetic simulations of catalytic systems, especially those with complex reaction networks.
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Affiliation(s)
- Chen Ding
- Collaborative Innovation Center of Chemistry for Energy Materials, Shanghai, Key Laboratory of Molecular Catalysis and Innovative Materials, MOE Key Laboratory of Computational Physical Sciences, Department of Chemistry, Fudan University, Shanghai, China
| | - Jingwei Weng
- Collaborative Innovation Center of Chemistry for Energy Materials, Shanghai, Key Laboratory of Molecular Catalysis and Innovative Materials, MOE Key Laboratory of Computational Physical Sciences, Department of Chemistry, Fudan University, Shanghai, China
| | - Tonghao Shen
- Collaborative Innovation Center of Chemistry for Energy Materials, Shanghai, Key Laboratory of Molecular Catalysis and Innovative Materials, MOE Key Laboratory of Computational Physical Sciences, Department of Chemistry, Fudan University, Shanghai, China
| | - Xin Xu
- Collaborative Innovation Center of Chemistry for Energy Materials, Shanghai, Key Laboratory of Molecular Catalysis and Innovative Materials, MOE Key Laboratory of Computational Physical Sciences, Department of Chemistry, Fudan University, Shanghai, China
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29
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Ravipati S, d'Avezac M, Nielsen J, Hetherington J, Stamatakis M. A Caching Scheme To Accelerate Kinetic Monte Carlo Simulations of Catalytic Reactions. J Phys Chem A 2020; 124:7140-7154. [PMID: 32786994 DOI: 10.1021/acs.jpca.0c03571] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Kinetic Monte Carlo (KMC) simulations have been instrumental in advancing our fundamental understanding of heterogeneously catalyzed reactions, with particular emphasis on structure sensitivity, ensemble effects, and the interplay between adlayer structure and adsorbate-adsorbate lateral interactions in shaping the observed kinetics. Yet, the computational cost of KMC remains high, thereby motivating the development of acceleration schemes that would improve the simulation efficiency. We present an exact such scheme, which implements a caching algorithm along with shared-memory parallelization to improve the computational performance of simulations incorporating long-range adsorbate-adsorbate lateral interactions. This scheme is based on caching information about the energetic interaction patterns associated with the products of each possible lattice process (adsorption, desorption, reaction etc.). Thus, every time a reaction occurs ("ongoing reaction"), it enables fast updates of the rate constants of "affected reactions", i.e., possible reactions in the region of influence of the "ongoing reaction". Benchmarks on KMC simulations of NOx oxidation/reduction, yielded acceleration factors of up to 20, when comparing single-thread runs without caching to runs on 16 threads with caching, for simulations with a cluster expansion Hamiltonian that incorporates up to 8th-nearest-neighbor interactions.
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Affiliation(s)
- Srikanth Ravipati
- Thomas Young Centre and Department of Chemical Engineering, University College London, Torrington Place, London WC1E 7JE, United Kingdom
| | - Mayeul d'Avezac
- Research Software Development Group, Research IT Services, University College London, Torrington Place, London WC1E 6BT, United Kingdom
| | - Jens Nielsen
- Research Software Development Group, Research IT Services, University College London, Torrington Place, London WC1E 6BT, United Kingdom
| | - James Hetherington
- Research Software Development Group, Research IT Services, University College London, Torrington Place, London WC1E 6BT, United Kingdom
| | - Michail Stamatakis
- Thomas Young Centre and Department of Chemical Engineering, University College London, Torrington Place, London WC1E 7JE, United Kingdom
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30
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Liu J, Tan L, Huang L, Wang Q, Liu Y. Kinetic Monte Carlo Modeling for the NO-CO Reaction Mechanism on Rh(100) and Rh(111). LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2020; 36:3127-3140. [PMID: 32075370 DOI: 10.1021/acs.langmuir.9b03720] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
The NO-CO reaction on Rh(100) and Rh(111) is a prototypical catalytic system with various practical applications, including the treatment of automotive gas exhausts. With parameters derived from first-principles calculations, the Brønsted-Evans-Polanyi (BEP) relation for the reaction steps of NO-CO on Rh(100) and Rh(111) surfaces is fitted, which is more accurate and practical for the calculation of the effect of interaction between adsorbates on activation energy compared to the basic BEP relation. Further, a kinetic Monte Carlo (kMC) model for the NO-CO reaction systems on Rh(100) and Rh(111) is constructed for the exploration of the system's reaction mechanism. Besides the temperature and pressure, the coverage and activation sites are essential factors for reaction kinetic of the NO-CO reaction system. Our results are beneficial for designing more efficient, economical, and environmentally friendly next-generation catalysts.
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Affiliation(s)
- Jiangyue Liu
- Department of Chemistry, Zhejiang University, Hangzhou 310027, People's Republic of China
| | - Lu Tan
- Department of Chemistry, Zhejiang University, Hangzhou 310027, People's Republic of China
| | - Liangliang Huang
- School of Chemical, Biological & Materials Engineering, University of Oklahoma, Norman, Oklahoma 73019, United States
| | - Qi Wang
- Department of Chemistry, Zhejiang University, Hangzhou 310027, People's Republic of China
| | - Yingchun Liu
- Department of Chemistry, Zhejiang University, Hangzhou 310027, People's Republic of China
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31
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Adsorption of CO and desorption of CO2 interacting with Pt (111) surface: a combined density functional theory and Kinetic Monte Carlo simulation. ADSORPTION 2020. [DOI: 10.1007/s10450-020-00202-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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32
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Development of a Microkinetic Model for the CO2 Methanation with an Automated Reaction Mechanism Generator. ACTA ACUST UNITED AC 2020. [DOI: 10.1016/b978-0-12-823377-1.50089-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/12/2023]
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33
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Galparsoro O, Kaufmann S, Auerbach DJ, Kandratsenka A, Wodtke AM. First principles rates for surface chemistry employing exact transition state theory: application to recombinative desorption of hydrogen from Cu(111). Phys Chem Chem Phys 2020; 22:17532-17539. [DOI: 10.1039/d0cp02858d] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We present first principles calculations of the reactive flux for thermal recombinative desorption of hydrogen from Cu(111).
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Affiliation(s)
- Oihana Galparsoro
- Institute for Physical Chemistry
- Georg-August University of Göttingen
- 37077 Göttingen
- Germany
- Department of Dynamics at Surfaces
| | - Sven Kaufmann
- Department of Dynamics at Surfaces
- Max-Planck-Institute for Biophysical Chemistry
- 37077 Göttingen
- Germany
| | - Daniel J. Auerbach
- Department of Dynamics at Surfaces
- Max-Planck-Institute for Biophysical Chemistry
- 37077 Göttingen
- Germany
| | - Alexander Kandratsenka
- Department of Dynamics at Surfaces
- Max-Planck-Institute for Biophysical Chemistry
- 37077 Göttingen
- Germany
| | - Alec M. Wodtke
- Institute for Physical Chemistry
- Georg-August University of Göttingen
- 37077 Göttingen
- Germany
- Department of Dynamics at Surfaces
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34
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Huš M, Grilc M, Pavlišič A, Likozar B, Hellman A. Multiscale modelling from quantum level to reactor scale: An example of ethylene epoxidation on silver catalysts. Catal Today 2019. [DOI: 10.1016/j.cattod.2019.05.022] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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35
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Mechanistic study of site blocking catalytic deactivation through accelerated kinetic Monte Carlo. J Catal 2019. [DOI: 10.1016/j.jcat.2019.08.029] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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36
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Prats H, Posada-Pérez S, Rodriguez JA, Sayós R, Illas F. Kinetic Monte Carlo Simulations Unveil Synergic Effects at Work on Bifunctional Catalysts. ACS Catal 2019. [DOI: 10.1021/acscatal.9b02813] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Hèctor Prats
- Departament de Ciència de Materials i Química Física & Institut de Química Teòrica i Computacional (IQTCUB), Universitat de Barcelona, C/Martí i Franquès 1-11, 08028 Barcelona, Spain
| | - Sergio Posada-Pérez
- Departament de Ciència de Materials i Química Física & Institut de Química Teòrica i Computacional (IQTCUB), Universitat de Barcelona, C/Martí i Franquès 1-11, 08028 Barcelona, Spain
| | - José A. Rodriguez
- Chemistry Department, Brookhaven National Laboratory, Upton, New York 11973, United States of America
| | - Ramón Sayós
- Departament de Ciència de Materials i Química Física & Institut de Química Teòrica i Computacional (IQTCUB), Universitat de Barcelona, C/Martí i Franquès 1-11, 08028 Barcelona, Spain
| | - Francesc Illas
- Departament de Ciència de Materials i Química Física & Institut de Química Teòrica i Computacional (IQTCUB), Universitat de Barcelona, C/Martí i Franquès 1-11, 08028 Barcelona, Spain
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37
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Affiliation(s)
- Mikkel Jørgensen
- Department of Physics and Competence Centre for Catalysis, Chalmers University of Technology, 412 96 Göteborg, Sweden
| | - Henrik Grönbeck
- Department of Physics and Competence Centre for Catalysis, Chalmers University of Technology, 412 96 Göteborg, Sweden
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38
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Matera S, Schneider WF, Heyden A, Savara A. Progress in Accurate Chemical Kinetic Modeling, Simulations, and Parameter Estimation for Heterogeneous Catalysis. ACS Catal 2019. [DOI: 10.1021/acscatal.9b01234] [Citation(s) in RCA: 94] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Sebastian Matera
- Fachbereich Mathematik and Informatik, Freie Universität, 14195 Berlin, Germany
| | - William F. Schneider
- Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, Indiana 46556, United States
| | - Andreas Heyden
- Department of Chemical Engineering, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Aditya Savara
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States
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39
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Andersen M, Panosetti C, Reuter K. A Practical Guide to Surface Kinetic Monte Carlo Simulations. Front Chem 2019; 7:202. [PMID: 31024891 PMCID: PMC6465329 DOI: 10.3389/fchem.2019.00202] [Citation(s) in RCA: 99] [Impact Index Per Article: 16.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2018] [Accepted: 03/15/2019] [Indexed: 11/26/2022] Open
Abstract
This review article is intended as a practical guide for newcomers to the field of kinetic Monte Carlo (KMC) simulations, and specifically to lattice KMC simulations as prevalently used for surface and interface applications. We will provide worked out examples using the kmos code, where we highlight the central approximations made in implementing a KMC model as well as possible pitfalls. This includes the mapping of the problem onto a lattice and the derivation of rate constant expressions for various elementary processes. Example KMC models will be presented within the application areas surface diffusion, crystal growth and heterogeneous catalysis, covering both transient and steady-state kinetics as well as the preparation of various initial states of the system. We highlight the sensitivity of KMC models to the elementary processes included, as well as to possible errors in the rate constants. For catalysis models in particular, a recurrent challenge is the occurrence of processes at very different timescales, e.g., fast diffusion processes and slow chemical reactions. We demonstrate how to overcome this timescale disparity problem using recently developed acceleration algorithms. Finally, we will discuss how to account for lateral interactions between the species adsorbed to the lattice, which can play an important role in all application areas covered here.
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Affiliation(s)
- Mie Andersen
- Chair for Theoretical Chemistry and Catalysis Research Center, Technische Universität München, Garching, Germany
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Andersen M, Levchenko SV, Scheffler M, Reuter K. Beyond Scaling Relations for the Description of Catalytic Materials. ACS Catal 2019. [DOI: 10.1021/acscatal.8b04478] [Citation(s) in RCA: 115] [Impact Index Per Article: 19.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Mie Andersen
- Chair for Theoretical Chemistry and Catalysis Research Center, Technische Universität München, Lichtenbergstrasse 4, 85747 Garching, Germany
| | - Sergey V. Levchenko
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
| | - Matthias Scheffler
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
| | - Karsten Reuter
- Chair for Theoretical Chemistry and Catalysis Research Center, Technische Universität München, Lichtenbergstrasse 4, 85747 Garching, Germany
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Núñez M, Vlachos DG. Multiscale Modeling Combined with Active Learning for Microstructure Optimization of Bifunctional Catalysts. Ind Eng Chem Res 2018. [DOI: 10.1021/acs.iecr.8b04801] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Marcel Núñez
- Department of Chemical and Biomolecular Engineering, University of Delaware, Newark, Delaware 19716, United States
| | - Dionisios G. Vlachos
- Department of Chemical and Biomolecular Engineering, University of Delaware, Newark, Delaware 19716, United States
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42
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H2 Thermal Desorption Spectra on Pt(111): A Density Functional Theory and Kinetic Monte Carlo Simulation Study. Catalysts 2018. [DOI: 10.3390/catal8100450] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Theoretical investigation of the static and kinetic behaviors of H and H2 on metal surface plays a key role in the development of hydrogenation catalysts and new materials with high H2 storage capacity. Based on the density functional theory (DFT) calculation of H and H2 adsorption on Pt(111), H(a) adatom strongly interacts with surface Pt; while H2 weakly adsorbs on Pt(111). H(a) adatoms stably occupy the face-centered cubic sites on Pt(111) which agrees with the experimental LERS observations. By using kinetic Monte Carlo (kMC) simulation, the qualitative effects of the kinetic parameters on the H2 TDS spectra indicate that the H2 desorption peaks shift to the low temperature with increasing pre-exponential factor and decreasing desorption barrier. Simultaneously, the desorption peaks shift downwards and broaden to two peaks with the increase of the lateral interaction energy among H(a) adatoms. Using the kMC simulation based on DFT calculation, the predicted H2 TDS spectra are well consistent with the experimental ones. It unanimously proves that the two peaks of TDS spectra are derived from the lateral interactions among H(a). This work provides the intrinsic kinetics of H(a) and H2 on Pt(111) at an atomic level, and gives insight into the development of hydrogenation catalysts.
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Francis MF. Continuum Microkinetic Rate Theory of Lattice Systems: Formalization, Current Limitations, and a Possible Basis for Continuum Rate Theory. J Phys Chem A 2018; 122:7267-7275. [DOI: 10.1021/acs.jpca.8b06238] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- M. F. Francis
- Los Alamos National Laboratories, Los Alamos, New Mexico 87545
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Chen Z, Wang H, Su NQ, Duan S, Shen T, Xu X. Beyond Mean-Field Microkinetics: Toward Accurate and Efficient Theoretical Modeling in Heterogeneous Catalysis. ACS Catal 2018. [DOI: 10.1021/acscatal.8b00943] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Zheng Chen
- Collaborative Innovation Center of Chemistry for Energy Materials, Shanghai, Key Laboratory of Molecular Catalysis and Innovative Materials, MOE Key Laboratory of Computational Physical Sciences, Department of Chemistry, Fudan University, Shanghai 200433, People’s Republic of China
| | - He Wang
- Collaborative Innovation Center of Chemistry for Energy Materials, Shanghai, Key Laboratory of Molecular Catalysis and Innovative Materials, MOE Key Laboratory of Computational Physical Sciences, Department of Chemistry, Fudan University, Shanghai 200433, People’s Republic of China
| | - Neil Qiang Su
- Collaborative Innovation Center of Chemistry for Energy Materials, Shanghai, Key Laboratory of Molecular Catalysis and Innovative Materials, MOE Key Laboratory of Computational Physical Sciences, Department of Chemistry, Fudan University, Shanghai 200433, People’s Republic of China
| | - Sai Duan
- Collaborative Innovation Center of Chemistry for Energy Materials, Shanghai, Key Laboratory of Molecular Catalysis and Innovative Materials, MOE Key Laboratory of Computational Physical Sciences, Department of Chemistry, Fudan University, Shanghai 200433, People’s Republic of China
| | - Tonghao Shen
- Collaborative Innovation Center of Chemistry for Energy Materials, Shanghai, Key Laboratory of Molecular Catalysis and Innovative Materials, MOE Key Laboratory of Computational Physical Sciences, Department of Chemistry, Fudan University, Shanghai 200433, People’s Republic of China
| | - Xin Xu
- Collaborative Innovation Center of Chemistry for Energy Materials, Shanghai, Key Laboratory of Molecular Catalysis and Innovative Materials, MOE Key Laboratory of Computational Physical Sciences, Department of Chemistry, Fudan University, Shanghai 200433, People’s Republic of China
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Jia C, Zhong W, Deng M, Jiang J. CO oxidation on Ru-Pt bimetallic nanoclusters supported on TiO 2(101): The effect of charge polarization. J Chem Phys 2018; 148:124701. [PMID: 29604843 DOI: 10.1063/1.5021712] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Pt-based catalyst is widely used in CO oxidation, while its catalytic activity is often undermined because of the CO poisoning effect. Here, using density functional theory, we propose the use of a Ru-Pt bimetallic cluster supported on TiO2 for CO oxidation, to achieve both high activity and low CO poisoning effect. Excellent catalytic activity is obtained in a Ru1Pt7/TiO2(101) system, which is ascribed to strong electric fields induced by charge polarization between one Ru atom and its neighboring Pt atoms. Because of its lower electronegativity, the Ru atom donates electrons to neighboring Pt. This induces strong electric fields around the top-layered Ru, substantially promoting the adsorption of O2/CO + O2 and eliminating the CO poisoning effect. In addition, the charge polarization also drives the d-band center of the Ru1Pt7 cluster to up-shift to the Fermi level. For surface O2 activation/CO oxidation, the strong electric field and d-band center close to the Fermi level can promote the adsorption of O2 and CO as well as reduce the reaction barrier of the rate-determining step. Meanwhile, since O2 easily dissociates on Ru1Pt7/TiO2(101) resulting in unwanted oxidation of Ru and Pt, a CO-rich condition is necessary to protect the catalyst at high temperature.
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Affiliation(s)
- Chuanyi Jia
- Guizhou Provincial Key Laboratory of Computational Nano-Material Science, Institute of Applied Physics, Guizhou Education University, Guiyang 550018, China
| | - Wenhui Zhong
- Guizhou Provincial Key Laboratory of Computational Nano-Material Science, Institute of Applied Physics, Guizhou Education University, Guiyang 550018, China
| | - Mingsen Deng
- Guizhou Provincial Key Laboratory of Computational Nano-Material Science, Institute of Applied Physics, Guizhou Education University, Guiyang 550018, China
| | - Jun Jiang
- Guizhou Synergetic Innovation Center of Scientific Big Data for Advance Manufacturing Technology, Guizhou Education University, Guiyang 550018, China
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