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Falkowski AG, da Costa RF, Lima MAP, de A Cadena A, Pocoroba R, Jones R, Mathur M, Childers JG, Khakoo MA, Kossoski F. Electron impact electronic excitation of benzene: Theory and experiment. J Chem Phys 2023; 159:194301. [PMID: 37966005 DOI: 10.1063/5.0173024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2023] [Accepted: 10/03/2023] [Indexed: 11/16/2023] Open
Abstract
We report experimental differential cross sections (DCSs) for electron impact excitation of bands I to V of benzene at incident energies of 10, 12.5, 15, and 20 eV. They are compared to calculations using the Schwinger multichannel method while accounting for up to 437 open channels. For intermediate scattering angles, the calculations reveal that the most intense band (V) emerges from surprisingly similar contributions from all its underlying states (despite some preference for the dipole-allowed transitions). They further shed light on intricate multichannel couplings between the states of bands I to V and higher-lying Rydberg states. In turn, the measurements support a vibronic coupling mechanism for excitation of bands II and IV and also show an unexpected forward peak in the spin-forbidden transition accounting for band III. Overall, there is decent agreement between theory and experiment at intermediate angles and at lower energies and in terms of the relative DCSs of the five bands. Discrepancies between the present and previous experiment regarding bands IV and V draw attention to the need of additional experimental investigations. We also report measured DCSs for vibrational excitation of combined C-H stretching modes.
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Affiliation(s)
- Alan G Falkowski
- Instituto de Física "Gleb Wataghin," Universidade Estadual de Campinas, Campinas, Brazil
| | - Romarly F da Costa
- Centro de Ciências Naturais e Humanas, Universidade Federal do ABC, 09210-580 Santo André, São Paulo, Brazil
| | - Marco A P Lima
- Instituto de Física "Gleb Wataghin," Universidade Estadual de Campinas, Campinas, Brazil
| | - Alexi de A Cadena
- Physics Department, California State University, Fullerton, California 92831, USA
| | - Ronald Pocoroba
- Physics Department, California State University, Fullerton, California 92831, USA
| | - Regan Jones
- Physics Department, California State University, Fullerton, California 92831, USA
| | - Mahak Mathur
- Troy High School, 2200 Dorothy Lane, Fullerton, California 92831, USA
| | - J G Childers
- Physics Department, California State University, Fullerton, California 92831, USA
| | - Murtadha A Khakoo
- Physics Department, California State University, Fullerton, California 92831, USA
| | - Fábris Kossoski
- Laboratoire de Chimie et Physique Quantiques (UMR 5626), Université de Toulouse, CNRS, UPS, 31062 Toulouse, France
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2
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Ameixa J, Arthur-Baidoo E, Pereira-da-Silva J, Ončák M, Ruivo J, Varella MDN, Ferreira da Silva F, Denifl S. Parent anion radical formation in coenzyme Q 0: Breaking ubiquinone family rules. Comput Struct Biotechnol J 2022; 21:346-353. [PMID: 36582437 PMCID: PMC9792397 DOI: 10.1016/j.csbj.2022.12.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 12/06/2022] [Accepted: 12/06/2022] [Indexed: 12/13/2022] Open
Abstract
We report electron attachment (EA) measurements for the parent anion radical formation from coenzyme Q0 (CoQ0) at low electron energies (<2 eV) along with quantum chemical calculations. CoQ0 may be considered a prototype for the electron withdrawing properties of the larger CoQ n molecules, in particular ubiquinone (CoQ10), an electron carrier in aerobic cell respiration. Herein, we show that the mechanisms for the parent anion radical formation of CoQ0 and CoQ n (n = 1,2,4) are remarkably distinct. Reported EA data for CoQ1, CoQ2, CoQ4 and para-benzoquinone indicated stabilization of the parent anion radicals around 1.2-1.4 eV. In contrast, we observe for the yield of the parent anion radical of CoQ0 a sharp peak at ∼ 0 eV, a shoulder at 0.07 eV and a peak around 0.49 eV. Although the mechanisms for the latter feature remain unclear, our calculations suggest that a dipole bound state (DBS) would account for the lower energy signals. Additionally, the isoprenoid side chains in CoQ n (n = 1,2,4) molecules seem to influence the DBS formation for these compounds. In contrast, the side chains enhance the parent anion radical stabilization around 1.4 eV. The absence of parent anion radical formation around 1.4 eV for CoQ0 can be attributed to the short auto-ionization lifetimes. The present results shed light on the underappreciated role played by the side chains in the stabilization of the parent anion radical. The isoprenoid tails should be viewed as co-responsible for the electron-accepting properties of ubiquinone, not mere spectators of electron transfer reactions.
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Affiliation(s)
- J. Ameixa
- Institut für Ionenphysik und Angewandte Physik, Leopold-Franzens Universität Innsbruck, Technikerstraße 25/3, 6020 Innsbruck, Austria
- CEFITEC, Department of Physics, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal
- Center for Molecular Biosciences (CMBI), Leopold-Franzens Universität Innsbruck, Technikerstraße 25/3, 6020 Innsbruck, Austria
| | - E. Arthur-Baidoo
- Institut für Ionenphysik und Angewandte Physik, Leopold-Franzens Universität Innsbruck, Technikerstraße 25/3, 6020 Innsbruck, Austria
- Center for Molecular Biosciences (CMBI), Leopold-Franzens Universität Innsbruck, Technikerstraße 25/3, 6020 Innsbruck, Austria
| | - J. Pereira-da-Silva
- CEFITEC, Department of Physics, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal
| | - M. Ončák
- Institut für Ionenphysik und Angewandte Physik, Leopold-Franzens Universität Innsbruck, Technikerstraße 25/3, 6020 Innsbruck, Austria
| | - J.C. Ruivo
- Institute of Physics, University of São Paulo, Rua do Matão 1731, 05508-090 São Paulo, Brazil
| | - M.T. do N. Varella
- Institute of Physics, University of São Paulo, Rua do Matão 1731, 05508-090 São Paulo, Brazil
| | - F. Ferreira da Silva
- CEFITEC, Department of Physics, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal
| | - S. Denifl
- Institut für Ionenphysik und Angewandte Physik, Leopold-Franzens Universität Innsbruck, Technikerstraße 25/3, 6020 Innsbruck, Austria
- Center for Molecular Biosciences (CMBI), Leopold-Franzens Universität Innsbruck, Technikerstraße 25/3, 6020 Innsbruck, Austria
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Singh S, Gupta D, Antony B, Tudorovskaya M, Tennyson J. Electron Scattering Cross Sections for Anthracene and Pyrene. J Phys Chem A 2020; 124:7088-7100. [PMID: 32786972 DOI: 10.1021/acs.jpca.0c05589] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
UK molecular R-matrix calculations have been carried out for electron scattering from anthracene and pyrene. These molecules belong to the family of polycyclic hydrocarbons (PAHs) and are found in a nebula known as the Red Rectangle. Static exchange (SE), static exchange plus polarization (SEP), and close coupling (CC) approximations are used for scattering calculations. Different elastic and inelastic cross sections are computed in the present work in the energy range of 0.1-15 eV. Dissociative electron attachment cross sections are also calculated for both the molecules. Various shape, Feshbach/core-excited, and mixed resonances are detected for these molecules below 10 eV. All of the resonances detected in the present study are in agreement with the existing experimental and theoretical results. Due to the complexity of the present targets, electron collision cross sections are essentially unknown and hence most of the results are presented for the first time.
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Affiliation(s)
- Suvam Singh
- Atomic and Molecular Physics Lab, Department of Physics, Indian Institute of Technology (Indian School of Mines), Dhanbad, JH 826004, India
| | - Dhanoj Gupta
- Plasma Technology Research Center, National Fusion Research Institute, 37 Dongjangsan-ro, Gunsan, Jeollabuk-do 54004, South Korea.,Department of Particle Physics and Astrophysics, Weizmann Institute of Science, Rehovot 7610010, Israel
| | - Bobby Antony
- Atomic and Molecular Physics Lab, Department of Physics, Indian Institute of Technology (Indian School of Mines), Dhanbad, JH 826004, India
| | - Maria Tudorovskaya
- Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, U.K
| | - Jonathan Tennyson
- Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, U.K
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Falkowski AG, Lima MAP, Kossoski F. Electronic excitation of ethanol by low-energy electron impact. J Chem Phys 2020; 152:244302. [PMID: 32610975 DOI: 10.1063/5.0008428] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We report computed differential cross sections (DCSs) for electron impact excitation of the lower-lying states of both trans and gauche tautomers of ethanol, as well as total cross sections for the 15 eV-50 eV energy range. The Schwinger multichannel (SMC) method with pseudopotentials has been employed, and in our most sophisticated calculation in terms of multichannel coupling, 431 open target states have been considered. We found an overall good agreement with the available experimental data at intermediate scattering angles and at higher impact energies. Although we have used a Born-closure scheme for the higher partial waves, we have found discrepancies in the forward direction that were assigned to a poor description of the long-range component of the lower partial waves. Meanwhile, the lack of more Rydberg states could be related to the overestimated DCSs at lower energies. Missing open channels are usually evoked to explain the remaining discrepancies to experiment, but here, we argue that other factors should also be involved. Aiming at an improved description of the target states, we have proposed a simple procedure for selecting the pairs of hole and particle orbitals while keeping the single excitation prescription of the current SMC implementation. A quantitative assessment of the collision process should further consider the individual contribution of each tautomer, which presented quite distinct DCSs in some cases. Our computed excitation energies also support that the second absorption band of ethanol is comprised of three singlet states of each tautomer, rather than the previously suggested two or four states.
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Affiliation(s)
| | - Marco A P Lima
- Instituto de Física "Gleb Wataghin," Universidade Estadual de Campinas, Campinas, Brazil
| | - Fábris Kossoski
- Instituto de Física "Gleb Wataghin," Universidade Estadual de Campinas, Campinas, Brazil
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Jones DB, Mendes M, Limão-Vieira P, Ferreira da Silva F, Jones NC, Hoffmann SV, Brunger MJ. Electronic structure and VUV photoabsorption measurements of thiophene. J Chem Phys 2019; 150:064303. [PMID: 30769978 DOI: 10.1063/1.5089505] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The absolute photoabsorption cross sections for thiophene in the 5.0-10.7 eV range were measured using synchrotron radiation. New theoretical calculations performed at the time-dependent density functional theory level were used to qualitatively interpret the recorded photoabsorption spectrum. The calculations facilitated a re-analysis of the observed vibronic and Rydberg structures in the photoabsorption spectrum. Here a number of features have been re-assigned, while a number of other features have been assigned for the first time. This represents the most comprehensive and self-consistent assignment of the thiophene high-resolution photoabsorption spectrum to date.
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Affiliation(s)
- D B Jones
- College of Science and Engineering, Flinders University, GPO Box 2100, Adelaide, SA 5001, Australia
| | - M Mendes
- Atomic and Molecular Collisions Laboratory, CEFITEC, Department of Physics, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal
| | - P Limão-Vieira
- Atomic and Molecular Collisions Laboratory, CEFITEC, Department of Physics, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal
| | - F Ferreira da Silva
- Atomic and Molecular Collisions Laboratory, CEFITEC, Department of Physics, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal
| | - N C Jones
- ISA, Department of Physics and Astronomy, Aarhus University, Ny Munkegade 120, DK-8000 Aarhus C, Denmark
| | - S V Hoffmann
- ISA, Department of Physics and Astronomy, Aarhus University, Ny Munkegade 120, DK-8000 Aarhus C, Denmark
| | - M J Brunger
- College of Science and Engineering, Flinders University, GPO Box 2100, Adelaide, SA 5001, Australia
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da Costa RF, Ruivo JC, Kossoski F, Varella MTDN, Bettega MHF, Jones DB, Brunger MJ, Lima MAP. An ab initio investigation for elastic and electronically inelastic electron scattering from para-benzoquinone. J Chem Phys 2018; 149:174308. [DOI: 10.1063/1.5050622] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- R. F. da Costa
- Centro de Ciências Exatas, Departamento de Física, Universidade Federal do Espírito Santo, 29075-910 Vitória, Espírito Santo, Brazil
- Instituto de Física “Gleb Wataghin”, Universidade Estadual de Campinas, 13083-859 Campinas, São Paulo, Brazil
| | - J. C. Ruivo
- Instituto de Física, Universidade de São Paulo, Rua do Matão 1731, 05508-090 São Paulo, Brazil
| | - F. Kossoski
- Instituto de Física “Gleb Wataghin”, Universidade Estadual de Campinas, 13083-859 Campinas, São Paulo, Brazil
| | - M. T. do N. Varella
- Instituto de Física, Universidade de São Paulo, Rua do Matão 1731, 05508-090 São Paulo, Brazil
| | - M. H. F. Bettega
- Departamento de Física, Universidade Federal do Paraná, CP 19044, 81531-990 Curitiba, Paraná, Brazil
| | - D. B. Jones
- College of Science and Engineering, Flinders University, GPO Box 2100, Adelaide, SA 5001, Australia
| | - M. J. Brunger
- College of Science and Engineering, Flinders University, GPO Box 2100, Adelaide, SA 5001, Australia
| | - M. A. P. Lima
- Instituto de Física “Gleb Wataghin”, Universidade Estadual de Campinas, 13083-859 Campinas, São Paulo, Brazil
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Lozano AI, Oller JC, Jones DB, da Costa RF, Varella MTDN, Bettega MHF, Ferreira da Silva F, Limão-Vieira P, Lima MAP, White RD, Brunger MJ, Blanco F, Muñoz A, García G. Total electron scattering cross sections from para-benzoquinone in the energy range 1-200 eV. Phys Chem Chem Phys 2018; 20:22368-22378. [PMID: 30129642 DOI: 10.1039/c8cp03297a] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Total electron scattering cross sections, from para-benzoquinone, for impact energies ranging between 1 to 200 eV, have been obtained by measuring the attenuation of a linear electron beam under magnetic confinement conditions. Random uncertainty limits on these values have been found to be within 5%. Systematic errors, due to the axial magnetic beam conditions in combination with the acceptance angle of the detector, have been evaluated by integrating our calculated independent atom model with the screening corrected additivity rule and interference term elastic differential cross sections over that detection acceptance angle. Our previous calculations and measurements on this molecule (Jones et al., J. Chem. Phys., 2018, 148, 124312 and J. Chem. Phys., 2018, 148, 204305), have been compiled and complemented with new elastic and inelastic scattering cross section calculations in order to obtain a comprehensive cross section data base, within the considered energy range, for modelling purposes. The self-consistency of the present data set has been evaluated by simulating the electron transport of 15 eV electrons in para-benzoquinone, and comparing those results with the observed transmitted intensity distribution.
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Affiliation(s)
- A I Lozano
- Instituto de Fisica Fundamental, CSIC, Serrano 113-bis, E-28006 Madrid, Spain.
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Jones DB, da Costa RF, Kossoski F, Varella MTDN, Bettega MHF, García G, Blanco F, White RD, Lima MAP, Brunger MJ. Integral elastic, vibrational-excitation, electronic-state excitation, ionization, and total cross sections for electron scattering from para-benzoquinone. J Chem Phys 2018; 148:204305. [DOI: 10.1063/1.5028298] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- D. B. Jones
- College of Science and Engineering, Flinders University, GPO Box 2100, Adelaide, SA 5001, Australia
| | - R. F. da Costa
- Instituto de Física “Gleb Wataghin,” Universidade Estadual de Campinas, 13083-859 Campinas, São Paulo, Brazil
- Centro de Ciências Exatas, Departamento de Física, Universidade Federal do Espírito Santo, 29075-901 Vitória, Espírito Santo, Brazil
| | - F. Kossoski
- Instituto de Física “Gleb Wataghin,” Universidade Estadual de Campinas, 13083-859 Campinas, São Paulo, Brazil
| | - M. T. do N. Varella
- Instituto de Física, Universidade de São Paulo, Rua do Matão 1731, 05508-090 São Paulo, São Paulo, Brazil
| | - M. H. F. Bettega
- Departamento de Física, Universidade Federal do Paraná, CP 19044, 81531-990 Curitiba, Paraná, Brazil
| | - G. García
- Instituto de Física Fundamental, CSIC, Serrano 113-bis, E-28006 Madrid, Spain
| | - F. Blanco
- Departamento de Física Atómica, Molecular y Nuclear, Universidad Complutense de Madrid, Madrid E-28040, Spain
| | - R. D. White
- College of Science and Engineering, James Cook University, Townsville, Qld 4811, Australia
| | - M. A. P. Lima
- Instituto de Física “Gleb Wataghin,” Universidade Estadual de Campinas, 13083-859 Campinas, São Paulo, Brazil
| | - M. J. Brunger
- College of Science and Engineering, Flinders University, GPO Box 2100, Adelaide, SA 5001, Australia
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