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Gu H, Fan L, Tang X, Yang Q. FedCut: A Spectral Analysis Framework for Reliable Detection of Byzantine Colluders. IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE 2024; 46:5905-5920. [PMID: 38466598 DOI: 10.1109/tpami.2024.3375287] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/13/2024]
Abstract
This paper proposes a general spectral analysis framework that thwarts a security risk in federated Learning caused by groups of malicious Byzantine attackers or colluders, who conspire to upload vicious model updates to severely debase global model performances. The proposed framework delineates the strong consistency and temporal coherence between Byzantine colluders' model updates from a spectral analysis lens, and, formulates the detection of Byzantine misbehaviours as a community detection problem in weighted graphs. The modified normalized graph cut is then utilized to discern attackers from benign participants. Moreover, the Spectral heuristics is adopted to make the detection robust against various attacks. The proposed Byzantine colluder resilient method, i.e., FedCut, is guaranteed to converge with bounded errors. Extensive experimental results under a variety of settings justify the superiority of FedCut, which demonstrates extremely robust model accuracy (MA) under various attacks. It was shown that FedCut's averaged MA is 2.1% to 16.5% better than that of the state of the art Byzantine-resilient methods. In terms of the worst-case model accuracy (MA), FedCut is 17.6% to 69.5% better than these methods.
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2
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Alodjants AP, Tsarev DV, Avdyushina AE, Khrennikov AY, Boukhanovsky AV. Quantum-inspired modeling of distributed intelligence systems with artificial intelligent agents self-organization. Sci Rep 2024; 14:15438. [PMID: 38965278 PMCID: PMC11224413 DOI: 10.1038/s41598-024-65684-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2024] [Accepted: 06/24/2024] [Indexed: 07/06/2024] Open
Abstract
Distributed intelligence systems (DIS) containing natural and artificial intelligence agents (NIA and AIA) for decision making (DM) belong to promising interdisciplinary studies aimed at digitalization of routine processes in industry, economy, management, and everyday life. In this work, we suggest a novel quantum-inspired approach to investigate the crucial features of DIS consisting of NIAs (users) and AIAs (digital assistants, or avatars). We suppose that N users and their avatars are located in N nodes of a complex avatar - avatar network. The avatars can receive information from and transmit it to each other within this network, while the users obtain information from the outside. The users are associated with their digital assistants and cannot communicate with each other directly. Depending on the meaningfulness/uselessness of the information presented by avatars, users show their attitude making emotional binary "like"/"dislike" responses. To characterize NIA cognitive abilities in a simple DM process, we propose a mapping procedure for the Russell's valence-arousal circumplex model onto an effective quantum-like two-level system. The DIS aims to maximize the average satisfaction of users via AIAs long-term adaptation to their users. In this regard, we examine the opinion formation and social impact as a result of the collective emotional state evolution occurring in the DIS. We show that generalized cooperativity parameters G i , i = 1 , ⋯ , N introduced in this work play a significant role in DIS features reflecting the users activity in possible cooperation and responses to their avatar suggestions. These parameters reveal how frequently AIAs and NIAs communicate with each other accounting the cognitive abilities of NIAs and information losses within the network. We demonstrate that conditions for opinion formation and social impact in the DIS are relevant to the second-order non-equilibrium phase transition. The transition establishes a non-vanishing average information field inherent to information diffusion and long-term avatar adaptation to their users. It occurs above the phase transition threshold, i.e. atG i > 1 , which implies small (residual) social polarization of the NIAs community. Below the threshold, at weak AIA-NIA coupling (G i ≤ 1 ), many uncertainties in the DIS inhibit opinion formation and social impact for the DM agents due to the information diffusion suppression; the AIAs self-organization within the avatar-avatar network is elucidated in this limit. To increase the users' impact, we suggest an adaptive approach by establishing a network-dependent coupling rate with their digital assistants. In this case, the mechanism of AIA control helps resolve the DM process in the presence of some uncertainties resulting from the variety of users' preferences. Our findings open new perspectives in different areas where AIAs become effective teammates for humans to solve common routine problems in network organizations.
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Affiliation(s)
| | - D V Tsarev
- ITMO University, St. Petersburg, Russia, 197101
| | | | - A Yu Khrennikov
- International Center for Mathematical Modeling in Physics, Engineering, Economics, and Cognitive Science Linnaeus University, 35195, Vaxjo-Kalmar, Sweden.
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3
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McKee J, Dallas T. Structural network characteristics affect epidemic severity and prediction in social contact networks. Infect Dis Model 2024; 9:204-213. [PMID: 38293687 PMCID: PMC10824764 DOI: 10.1016/j.idm.2023.12.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 11/14/2023] [Accepted: 12/27/2023] [Indexed: 02/01/2024] Open
Abstract
Understanding and mitigating epidemic spread in complex networks requires the measurement of structural network properties associated with epidemic risk. Classic measures of epidemic thresholds like the basic reproduction number (R0) have been adapted to account for the structure of social contact networks but still may be unable to capture epidemic potential relative to more recent measures based on spectral graph properties. Here, we explore the ability of R0 and the spectral radius of the social contact network to estimate epidemic susceptibility. To do so, we simulate epidemics on a series of constructed (small world, scale-free, and random networks) and a collection of over 700 empirical biological social contact networks. Further, we explore how other network properties are related to these two epidemic estimators (R0 and spectral radius) and mean infection prevalence in simulated epidemics. Overall, we find that network properties strongly influence epidemic dynamics and the subsequent utility of R0 and spectral radius as indicators of epidemic risk.
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Affiliation(s)
- Jae McKee
- Bioinnovation Program, Tulane University, New Orleans, LA, 70118, USA
- Department of Medicine, Tulane University School of Medicine, New Orleans, LA, 70112, USA
| | - Tad Dallas
- Department of Biological Sciences, University of South Carolina, Columbia, SC, 29208, USA
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4
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Kaiser D, Patwardhan S, Kim M, Radicchi F. Reconstruction of multiplex networks via graph embeddings. Phys Rev E 2024; 109:024313. [PMID: 38491583 DOI: 10.1103/physreve.109.024313] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2023] [Accepted: 02/06/2024] [Indexed: 03/18/2024]
Abstract
Multiplex networks are collections of networks with identical nodes but distinct layers of edges. They are genuine representations of a large variety of real systems whose elements interact in multiple fashions or flavors. However, multiplex networks are not always simple to observe in the real world; often, only partial information on the layer structure of the networks is available, whereas the remaining information is in the form of aggregated, single-layer networks. Recent works have proposed solutions to the problem of reconstructing the hidden multiplexity of single-layer networks using tools proper for network science. Here, we develop a machine-learning framework that takes advantage of graph embeddings, i.e., representations of networks in geometric space. We validate the framework in systematic experiments aimed at the reconstruction of synthetic and real-world multiplex networks, providing evidence that our proposed framework not only accomplishes its intended task, but often outperforms existing reconstruction techniques.
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Affiliation(s)
- Daniel Kaiser
- Center for Complex Networks and Systems Research, Luddy School of Informatics, Computing, and Engineering Indiana University, Bloomington, Indiana 47408, USA
| | - Siddharth Patwardhan
- Center for Complex Networks and Systems Research, Luddy School of Informatics, Computing, and Engineering Indiana University, Bloomington, Indiana 47408, USA
| | - Minsuk Kim
- Center for Complex Networks and Systems Research, Luddy School of Informatics, Computing, and Engineering Indiana University, Bloomington, Indiana 47408, USA
| | - Filippo Radicchi
- Center for Complex Networks and Systems Research, Luddy School of Informatics, Computing, and Engineering Indiana University, Bloomington, Indiana 47408, USA
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5
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Xiong K, Ren J, Marchesoni F, Huang J. Phononic band gap in random spring networks. Phys Rev E 2023; 108:044306. [PMID: 37978624 DOI: 10.1103/physreve.108.044306] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Accepted: 09/07/2023] [Indexed: 11/19/2023]
Abstract
We investigate the relation between topological and vibrational properties of networked materials by analyzing, both numerically and analytically, the properties of a random spring network model. We establish a pseudodispersion relation, which allows us to predict the existence of distinct transitions from extended to localized vibrational modes in this class of materials. Consequently, we propose an alternative method to control phonon and elastic wave propagation in disordered networks. In particular, the phonon band gap of our spring network model can be enhanced by either increasing its average degree or decreasing its assortativity coefficient. Applications to phonon band engineering and vibrational energy harvesting are briefly discussed.
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Affiliation(s)
- Kezhao Xiong
- Department of Physics, State Key Laboratory of Surface Physics, and Key Laboratory of Micro and Nano Photonic Structures (MOE), Fudan University, Shanghai 200438, China
- College of Sciences, Xi'an University of Science and Technology, Xi'an 710054, China
| | - Jie Ren
- MOE Key Laboratory of Advanced Micro-Structured Materials and Shanghai Key Laboratory of Special Artificial Microstructure Materials and Technology, School of Physics Science and Engineering, Tongji University, Shanghai 200092, China
| | - Fabio Marchesoni
- MOE Key Laboratory of Advanced Micro-Structured Materials and Shanghai Key Laboratory of Special Artificial Microstructure Materials and Technology, School of Physics Science and Engineering, Tongji University, Shanghai 200092, China
- Department of Physics, University of Camerino, 62032 Camerino, Italy
| | - Jiping Huang
- Department of Physics, State Key Laboratory of Surface Physics, and Key Laboratory of Micro and Nano Photonic Structures (MOE), Fudan University, Shanghai 200438, China
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6
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Mishra A, Jalan S. Eigenvector localization in hypergraphs: Pairwise versus higher-order links. Phys Rev E 2023; 107:034311. [PMID: 37072980 DOI: 10.1103/physreve.107.034311] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2022] [Accepted: 03/02/2023] [Indexed: 04/20/2023]
Abstract
Localization behaviors of Laplacian eigenvectors of complex networks furnish an explanation to various dynamical phenomena of the corresponding complex systems. We numerically examine roles of higher-order and pairwise links in driving eigenvector localization of hypergraphs Laplacians. We find that pairwise interactions can engender localization of eigenvectors corresponding to small eigenvalues for some cases, whereas higher-order interactions, even being much much less than the pairwise links, keep steering localization of the eigenvectors corresponding to larger eigenvalues for all the cases considered here. These results will be advantageous to comprehend dynamical phenomena, such as diffusion, and random walks on a range of real-world complex systems having higher-order interactions in better manner.
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Affiliation(s)
- Ankit Mishra
- Department of Physics, Complex systems Lab, Indian Institute of Technology Indore, Khandwa Road, Simrol, Indore-453552, India
| | - Sarika Jalan
- Department of Physics, Complex systems Lab, Indian Institute of Technology Indore, Khandwa Road, Simrol, Indore-453552, India
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7
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Sanders J, Van Werde A. Singular value distribution of dense random matrices with block Markovian dependence. Stoch Process Their Appl 2023. [DOI: 10.1016/j.spa.2023.01.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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8
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Network structure from a characterization of interactions in complex systems. Sci Rep 2022; 12:11742. [PMID: 35817803 PMCID: PMC9273794 DOI: 10.1038/s41598-022-14397-2] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Accepted: 06/06/2022] [Indexed: 11/29/2022] Open
Abstract
Many natural and man-made complex dynamical systems can be represented by networks with vertices representing system units and edges the coupling between vertices. If edges of such a structural network are inaccessible, a widely used approach is to identify them with interactions between vertices, thereby setting up a functional network. However, it is an unsolved issue if and to what extent important properties of a functional network on the global and the local scale match those of the corresponding structural network. We address this issue by deriving functional networks from characterizing interactions in paradigmatic oscillator networks with widely-used time-series-analysis techniques for various factors that alter the collective network dynamics. Surprisingly, we find that particularly key constituents of functional networks—as identified with betweenness and eigenvector centrality—coincide with ground truth to a high degree, while global topological and spectral properties—clustering coefficient, average shortest path length, assortativity, and synchronizability—clearly deviate. We obtain similar concurrences for an empirical network. Our findings are of relevance for various scientific fields and call for conceptual and methodological refinements to further our understanding of the relationship between structure and function of complex dynamical systems.
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Mishra A, Raghav T, Jalan S. Eigenvalue ratio statistics of complex networks: Disorder versus randomness. Phys Rev E 2022; 105:064307. [PMID: 35854611 DOI: 10.1103/physreve.105.064307] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2021] [Accepted: 05/20/2022] [Indexed: 06/15/2023]
Abstract
The distribution of the ratios of consecutive eigenvalue spacings of random matrices has emerged as an important tool to study spectral properties of many-body systems. This article numerically investigates the eigenvalue ratios distribution of various model networks, namely, small-world, Erdős-Rényi random, and (dis)assortative random having a diagonal disorder in the corresponding adjacency matrices. Without any diagonal disorder, the eigenvalues ratio distribution of these model networks depict Gaussian orthogonal ensemble (GOE) statistics. Upon adding diagonal disorder, there exists a gradual transition from the GOE to Poisson statistics depending upon the strength of the disorder. The critical disorder (w_{c}) required to procure the Poisson statistics increases with the randomness in the network architecture. We relate w_{c} with the time taken by maximum entropy random walker to reach the steady state. These analyses will be helpful to understand the role of eigenvalues other than the principal one for various network dynamics such as transient behavior.
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Affiliation(s)
- Ankit Mishra
- Complex Systems Lab, Department of Physics, Indian Institute of Technology Indore, Khandwa Road, Simrol, Indore-453552, India
| | - Tanu Raghav
- Complex Systems Lab, Department of Physics, Indian Institute of Technology Indore, Khandwa Road, Simrol, Indore-453552, India
| | - Sarika Jalan
- Complex Systems Lab, Department of Physics, Indian Institute of Technology Indore, Khandwa Road, Simrol, Indore-453552, India
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10
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Weng T, Wang H, Yang H, Gu C, Zhang J, Small M. Representing complex networks without connectivity via spectrum series. Inf Sci (N Y) 2021. [DOI: 10.1016/j.ins.2021.01.067] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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11
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Patankar SP, Kim JZ, Pasqualetti F, Bassett DS. Path-dependent connectivity, not modularity, consistently predicts controllability of structural brain networks. Netw Neurosci 2020; 4:1091-1121. [PMID: 33195950 PMCID: PMC7655114 DOI: 10.1162/netn_a_00157] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2020] [Accepted: 07/15/2020] [Indexed: 01/03/2023] Open
Abstract
The human brain displays rich communication dynamics that are thought to be particularly well-reflected in its marked community structure. Yet, the precise relationship between community structure in structural brain networks and the communication dynamics that can emerge therefrom is not well understood. In addition to offering insight into the structure-function relationship of networked systems, such an understanding is a critical step toward the ability to manipulate the brain's large-scale dynamical activity in a targeted manner. We investigate the role of community structure in the controllability of structural brain networks. At the region level, we find that certain network measures of community structure are sometimes statistically correlated with measures of linear controllability. However, we then demonstrate that this relationship depends on the distribution of network edge weights. We highlight the complexity of the relationship between community structure and controllability by performing numerical simulations using canonical graph models with varying mesoscale architectures and edge weight distributions. Finally, we demonstrate that weighted subgraph centrality, a measure rooted in the graph spectrum, and which captures higher order graph architecture, is a stronger and more consistent predictor of controllability. Our study contributes to an understanding of how the brain's diverse mesoscale structure supports transient communication dynamics.
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Affiliation(s)
| | - Jason Z. Kim
- Department of Bioengineering, University of Pennsylvania, Philadelphia, PA USA
| | - Fabio Pasqualetti
- Department of Mechanical Engineering, University of California, Riverside, CA USA
| | - Danielle S. Bassett
- Department of Bioengineering, University of Pennsylvania, Philadelphia, PA USA
- Department of Neuroscience, University of Pennsylvania, Philadelphia, PA USA
- Department of Electrical and Systems Engineering, University of Pennsylvania, Philadelphia, PA USA
- Department of Neurology, University of Pennsylvania, Philadelphia, PA USA
- Department of Physics and Astronomy, University of Pennsylvania, Philadelphia, PA USA
- Department of Psychiatry, University of Pennsylvania, Philadelphia, PA USA
- Santa Fe Institute, Santa Fe, NM USA
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12
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Zhou M, Tan J, Liao H, Wang Z, Mao R. Dismantling complex networks based on the principal eigenvalue of the adjacency matrix. CHAOS (WOODBURY, N.Y.) 2020; 30:083118. [PMID: 32872797 DOI: 10.1063/1.5141153] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2019] [Accepted: 07/09/2020] [Indexed: 06/11/2023]
Abstract
The connectivity of complex networks is usually determined by a small fraction of key nodes. Earlier works successfully identify an influential single node, yet have some problems for the case of multiple ones. In this paper, based on the matrix spectral theory, we propose the collective influence of multiple nodes. An interesting finding is that some traditionally influential nodes have strong internal coupling interactions that reduce their collective influence. We then propose a greedy algorithm to dismantle complex networks by optimizing the collective influence of multiple nodes. Experimental results show that our proposed method outperforms the state of the art methods in terms of the principal eigenvalue and the giant component of the remaining networks.
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Affiliation(s)
- Mingyang Zhou
- Guangdong Province Key Laboratory of Popular High Performance Computers, College of Computer Science and Software Engineering, Shenzhen University, Shenzhen 518060, People's Republic of China; Guangdong Province Engineering Center of China-made High Performance Data Computing System, Shenzhen 518060, People's Republic of China; and Shenzhen City Key Laboratory of Service Computing and Application, Shenzhen 518060, People's Republic of China
| | - Juntao Tan
- Guangdong Province Key Laboratory of Popular High Performance Computers, College of Computer Science and Software Engineering, Shenzhen University, Shenzhen 518060, People's Republic of China; Guangdong Province Engineering Center of China-made High Performance Data Computing System, Shenzhen 518060, People's Republic of China; and Shenzhen City Key Laboratory of Service Computing and Application, Shenzhen 518060, People's Republic of China
| | - Hao Liao
- Guangdong Province Key Laboratory of Popular High Performance Computers, College of Computer Science and Software Engineering, Shenzhen University, Shenzhen 518060, People's Republic of China; Guangdong Province Engineering Center of China-made High Performance Data Computing System, Shenzhen 518060, People's Republic of China; and Shenzhen City Key Laboratory of Service Computing and Application, Shenzhen 518060, People's Republic of China
| | - Ziming Wang
- Guangdong Province Key Laboratory of Popular High Performance Computers, College of Computer Science and Software Engineering, Shenzhen University, Shenzhen 518060, People's Republic of China; Guangdong Province Engineering Center of China-made High Performance Data Computing System, Shenzhen 518060, People's Republic of China; and Shenzhen City Key Laboratory of Service Computing and Application, Shenzhen 518060, People's Republic of China
| | - Rui Mao
- Guangdong Province Key Laboratory of Popular High Performance Computers, College of Computer Science and Software Engineering, Shenzhen University, Shenzhen 518060, People's Republic of China; Guangdong Province Engineering Center of China-made High Performance Data Computing System, Shenzhen 518060, People's Republic of China; and Shenzhen City Key Laboratory of Service Computing and Application, Shenzhen 518060, People's Republic of China
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13
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Morrison M, Gabbay M. Community detectability and structural balance dynamics in signed networks. Phys Rev E 2020; 102:012304. [PMID: 32795056 DOI: 10.1103/physreve.102.012304] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2019] [Accepted: 06/08/2020] [Indexed: 11/07/2022]
Abstract
We investigate signed networks with community structure with respect to their spectra and their evolution under a dynamical model of structural balance, a prominent theory of signed social networks. The spectrum of the adjacency matrix generated by a stochastic block model with two equal-size communities shows detectability transitions in which the community structure becomes manifest when its signal eigenvalue appears outside the main spectral band. The spectrum also exhibits "sociality" transitions involving the homogeneous structure representing the average tie value. We derive expressions for the eigenvalues associated with the community and homogeneous structure as well as the transition boundaries, all in good agreement with numerical results. Using the stochastically generated networks as initial conditions for a simple model of structural balance dynamics yields three outcome regimes: two hostile factions that correspond with the initial communities, two hostile factions uncorrelated with those communities, and a single harmonious faction of all nodes. The detectability transition predicts the boundary between the assortative and mixed two-faction states and the sociality transition predicts that between the mixed and harmonious states. Our results may yield insight into the dynamics of cooperation and conflict among actors with distinct social identities.
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Affiliation(s)
- Megan Morrison
- Department of Applied Mathematics, University of Washington, Washington 98115, USA
| | - Michael Gabbay
- Applied Physics Laboratory, University of Washington, Washington 98115, USA
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14
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F de Resende BM, F Costa LD. Characterization and comparison of large directed networks through the spectra of the magnetic Laplacian. CHAOS (WOODBURY, N.Y.) 2020; 30:073141. [PMID: 32752616 DOI: 10.1063/5.0006891] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2020] [Accepted: 06/29/2020] [Indexed: 06/11/2023]
Abstract
In this paper, we investigated the possibility of using the magnetic Laplacian to characterize directed networks. We address the problem of characterization of network models and perform the inference of the parameters used to generate these networks under analysis. Many interesting results are obtained, including the finding that the community structure is related to rotational symmetry in the spectral measurements for a type of stochastic block model. Due the hermiticity property of the magnetic Laplacian we show here how to scale our approach to larger networks containing hundreds of thousands of nodes using the Kernel Polynomial Method (KPM), a method commonly used in condensed matter physics. Using a combination of KPM with the Wasserstein metric, we show how we can measure distances between networks, even when these networks are directed, large, and have different sizes, a hard problem that cannot be tackled by previous methods presented in the literature.
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Affiliation(s)
| | - Luciano da F Costa
- Instituto de Física de São Carlos, Universidade de São Paulo, São Carlos, SP 13566-590, Brazil
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15
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Whitwell HJ, Bacalini MG, Blyuss O, Chen S, Garagnani P, Gordleeva SY, Jalan S, Ivanchenko M, Kanakov O, Kustikova V, Mariño IP, Meyerov I, Ullner E, Franceschi C, Zaikin A. The Human Body as a Super Network: Digital Methods to Analyze the Propagation of Aging. Front Aging Neurosci 2020; 12:136. [PMID: 32523526 PMCID: PMC7261843 DOI: 10.3389/fnagi.2020.00136] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2020] [Accepted: 04/22/2020] [Indexed: 12/13/2022] Open
Abstract
Biological aging is a complex process involving multiple biological processes. These can be understood theoretically though considering them as individual networks-e.g., epigenetic networks, cell-cell networks (such as astroglial networks), and population genetics. Mathematical modeling allows the combination of such networks so that they may be studied in unison, to better understand how the so-called "seven pillars of aging" combine and to generate hypothesis for treating aging as a condition at relatively early biological ages. In this review, we consider how recent progression in mathematical modeling can be utilized to investigate aging, particularly in, but not exclusive to, the context of degenerative neuronal disease. We also consider how the latest techniques for generating biomarker models for disease prediction, such as longitudinal analysis and parenclitic analysis can be applied to as both biomarker platforms for aging, as well as to better understand the inescapable condition. This review is written by a highly diverse and multi-disciplinary team of scientists from across the globe and calls for greater collaboration between diverse fields of research.
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Affiliation(s)
- Harry J Whitwell
- Department of Chemical Engineering, Imperial College London, London, United Kingdom
| | | | - Oleg Blyuss
- School of Physics, Astronomy and Mathematics, University of Hertfordshire, Harfield, United Kingdom.,Department of Paediatrics and Paediatric Infectious Diseases, Sechenov First Moscow State Medical University (Sechenov University), Moscow, Russia
| | - Shangbin Chen
- Britton Chance Centre for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics-Huazhong University of Science and Technology, Wuhan, China
| | - Paolo Garagnani
- Department of Experimental, Diagnostic and Specialty Medicine (DIMES), University of Bologna, Bologna, Italy
| | - Susan Yu Gordleeva
- Laboratory of Systems Medicine of Healthy Aging, Lobachevsky State University of Nizhny Novgorod, Nizhny Novgorod, Russia
| | - Sarika Jalan
- Complex Systems Laboratory, Discipline of Physics, Indian Institute of Technology Indore, Indore, India.,Centre for Bio-Science and Bio-Medical Engineering, Indian Institute of Technology Indore, Indore, India
| | - Mikhail Ivanchenko
- Institute of Information Technologies, Mathematics and Mechanics, Lobachevsky State University of Nizhny Novgorod, Nizhny Novgorod, Russia
| | - Oleg Kanakov
- Laboratory of Systems Medicine of Healthy Aging, Lobachevsky State University of Nizhny Novgorod, Nizhny Novgorod, Russia
| | - Valentina Kustikova
- Institute of Information Technologies, Mathematics and Mechanics, Lobachevsky State University of Nizhny Novgorod, Nizhny Novgorod, Russia
| | - Ines P Mariño
- Department of Biology and Geology, Physics and Inorganic Chemistry, Universidad Rey Juan Carlos, Madrid, Spain
| | - Iosif Meyerov
- Institute of Information Technologies, Mathematics and Mechanics, Lobachevsky State University of Nizhny Novgorod, Nizhny Novgorod, Russia
| | - Ekkehard Ullner
- Department of Physics (SUPA), Institute for Complex Systems and Mathematical Biology, University of Aberdeen, Aberdeen, United Kingdom
| | - Claudio Franceschi
- Laboratory of Systems Medicine of Healthy Aging, Lobachevsky State University of Nizhny Novgorod, Nizhny Novgorod, Russia.,Institute of Information Technologies, Mathematics and Mechanics, Lobachevsky State University of Nizhny Novgorod, Nizhny Novgorod, Russia
| | - Alexey Zaikin
- Department of Paediatrics and Paediatric Infectious Diseases, Sechenov First Moscow State Medical University (Sechenov University), Moscow, Russia.,Institute of Information Technologies, Mathematics and Mechanics, Lobachevsky State University of Nizhny Novgorod, Nizhny Novgorod, Russia.,Department of Mathematics, Institute for Women's Health, University College London, London, United Kingdom
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16
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Arola-Fernández L, Mosquera-Doñate G, Steinegger B, Arenas A. Uncertainty propagation in complex networks: From noisy links to critical properties. CHAOS (WOODBURY, N.Y.) 2020; 30:023129. [PMID: 32113220 DOI: 10.1063/1.5129630] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2019] [Accepted: 02/01/2020] [Indexed: 06/10/2023]
Abstract
Many complex networks are built up from empirical data prone to experimental error. Thus, the determination of the specific weights of the links is a noisy measure. Noise propagates to those macroscopic variables researchers are interested in, such as the critical threshold for synchronization of coupled oscillators or for the spreading of a disease. Here, we apply error propagation to estimate the macroscopic uncertainty in the critical threshold for some dynamical processes in networks with noisy links. We obtain closed form expressions for the mean and standard deviation of the critical threshold depending on the properties of the noise and the moments of the degree distribution of the network. The analysis provides confidence intervals for critical predictions when dealing with uncertain measurements or intrinsic fluctuations in empirical networked systems. Furthermore, our results unveil a nonmonotonous behavior of the uncertainty of the critical threshold that depends on the specific network structure.
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Affiliation(s)
- Lluís Arola-Fernández
- Departament d'Enginyeria Informàtica i Matemàtiques, Universitat Rovira i Virgili, 43007 Tarragona, Catalonia, Spain
| | | | - Benjamin Steinegger
- Departament d'Enginyeria Informàtica i Matemàtiques, Universitat Rovira i Virgili, 43007 Tarragona, Catalonia, Spain
| | - Alex Arenas
- Departament d'Enginyeria Informàtica i Matemàtiques, Universitat Rovira i Virgili, 43007 Tarragona, Catalonia, Spain
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Dankulov MM, Tadić B, Melnik R. Spectral properties of hyperbolic nanonetworks with tunable aggregation of simplexes. Phys Rev E 2019; 100:012309. [PMID: 31499845 DOI: 10.1103/physreve.100.012309] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2019] [Indexed: 06/10/2023]
Abstract
Cooperative self-assembly is a ubiquitous phenomenon found in natural systems which is used for designing nanostructured materials with new functional features. Its origin and mechanisms, leading to improved functionality of the assembly, have attracted much attention from researchers in many branches of science and engineering. These complex structures often come with hyperbolic geometry; however, the relation between the hyperbolicity and their spectral and dynamical properties remains unclear. Using the model of aggregation of simplexes introduced by Šuvakov et al. [Sci. Rep. 8, 1987 (2018)2045-232210.1038/s41598-018-20398-x], here we study topological and spectral properties of a large class of self-assembled structures or nanonetworks consisting of monodisperse building blocks (cliques of size n=3,4,5,6) which self-assemble via sharing the geometrical shapes of a lower order. The size of the shared substructure is tuned by varying the chemical affinity ν such that for significant positive ν sharing the largest face is the most probable, while for ν<0, attaching via a single node dominates. Our results reveal that, while the parameter of hyperbolicity remains δ_{max}=1 across the assemblies, their structure and spectral dimension d_{s} vary with the size of cliques n and the affinity when ν≥0. In this range, we find that d_{s}>4 can be reached for n≥5 and sufficiently large ν. For the aggregates of triangles and tetrahedra, the spectral dimension remains in the range d_{s}∈[2,4), as well as for the higher cliques at vanishing affinity. On the other end, for ν<0, we find d_{s}≂1.57 independently on n. Moreover, the spectral distribution of the normalized Laplacian eigenvalues has a characteristic shape with peaks and a pronounced minimum, representing the hierarchical architecture of the simplicial complexes. These findings show how the structures compatible with complex dynamical properties can be assembled by controlling the higher-order connectivity among the building blocks.
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Affiliation(s)
- Marija Mitrović Dankulov
- Scientific Computing Laboratory, Center for the Study of Complex Systems, Institute of Physics Belgrade, University of Belgrade, Pregrevica 118, 11080 Belgrade, Serbia
- Department of Theoretical Physics, Jožef Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia
| | - Bosiljka Tadić
- Department of Theoretical Physics, Jožef Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia
- Complexity Science Hub Vienna, Josephstadterstrasse 39, 1080 Vienna, Austria
| | - Roderick Melnik
- MS2Discovery Interdisciplinary Research Institute, M2NeT Laboratory and Department of Mathematics, Wilfrid Laurier University, 75 University Ave W, Waterloo, Ontario, Canada N2L 3C5
- BCAM-Basque Center for Applied Mathematics, Alameda de Mazarredo 14, E-48009 Bilbao, Spain
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18
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Tamaševičius A, Bumelienė S, Adomaitienė E. Stabilization of steady states in an array of all-to-all coupled oscillators. Phys Rev E 2019; 99:042217. [PMID: 31108634 DOI: 10.1103/physreve.99.042217] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2019] [Indexed: 11/07/2022]
Abstract
An array of globally all-to-all coupled FitzHugh-Nagumo-type oscillators is considered. We suggest an adaptive first-order stable filter control feedback technique to stabilize the steady states of the oscillators. The overall system includes separate networks of coupling and control. Therefore, the controller does not depend on the intrinsic parameters of coupling between the oscillators. We have investigated stabilization of the steady states in an array of nonidentical oscillators analytically, numerically, and experimentally.
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Affiliation(s)
- Arūnas Tamaševičius
- Center for Physical Sciences and Technology, 3 Saulėtekio ave., Vilnius LT-10257, Lithuania
| | - Skaidra Bumelienė
- Center for Physical Sciences and Technology, 3 Saulėtekio ave., Vilnius LT-10257, Lithuania
| | - Elena Adomaitienė
- Center for Physical Sciences and Technology, 3 Saulėtekio ave., Vilnius LT-10257, Lithuania
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19
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Rai A, Shinde P, Jalan S. Network spectra for drug-target identification in complex diseases: new guns against old foes. APPLIED NETWORK SCIENCE 2018; 3:51. [PMID: 30596144 PMCID: PMC6297166 DOI: 10.1007/s41109-018-0107-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2018] [Accepted: 10/30/2018] [Indexed: 05/07/2023]
Abstract
The fundamental understanding of altered complex molecular interactions in a diseased condition is the key to its cure. The overall functioning of these molecules is kind of jugglers play in the cell orchestra and to anticipate these relationships among the molecules is one of the greatest challenges in modern biology and medicine. Network science turned out to be providing a successful and simple platform to understand complex interactions among healthy and diseased tissues. Furthermore, much information about the structure and dynamics of a network is concealed in the eigenvalues of its adjacency matrix. In this review, we illustrate rapid advancements in the field of network science in combination with spectral graph theory that enables us to uncover the complexities of various diseases. Interpretations laid by network science approach have solicited insights into molecular relationships and have reported novel drug targets and biomarkers in various complex diseases.
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Affiliation(s)
- Aparna Rai
- Aushadhi Open Innovation Programme, Indian Institute of Technology Guwahati, Guwahati, 781039 India
| | - Pramod Shinde
- Discipline of Biosciences and Biomedical Engineering, Indian Institute of Technology Indore, Khandwa Road, Simrol, Indore, 453552 India
| | - Sarika Jalan
- Discipline of Biosciences and Biomedical Engineering, Indian Institute of Technology Indore, Khandwa Road, Simrol, Indore, 453552 India
- Complex Systems Lab, Discipline of Physics, Indian Institute of Technology Indore, Khandwa Road, Indore, 453552 India
- Lobachevsky University, Gagarin avenue 23, Nizhny Novgorod, 603950 Russia
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