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Xu J, Carney TE, Zhou R, Shepard C, Kanai Y. Real-Time Time-Dependent Density Functional Theory for Simulating Nonequilibrium Electron Dynamics. J Am Chem Soc 2024; 146:5011-5029. [PMID: 38362887 DOI: 10.1021/jacs.3c08226] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/17/2024]
Abstract
The explicit real-time propagation approach for time-dependent density functional theory (RT-TDDFT) has increasingly become a popular first-principles computational method for modeling various time-dependent electronic properties of complex chemical systems. In this Perspective, we provide a nontechnical discussion of how this first-principles simulation approach has been used to gain novel physical insights into nonequilibrium electron dynamics phenomena in recent years. Following a concise overview of the RT-TDDFT methodology from a practical standpoint, we discuss our recent studies on the electronic stopping of DNA in water and the Floquet topological phase as examples. Our discussion focuses on how RT-TDDFT simulations played a unique role in deriving new scientific understandings. We then discuss existing challenges and some new advances at the frontier of RT-TDDFT method development for studying increasingly complex dynamic phenomena and systems.
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Affiliation(s)
- Jianhang Xu
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Thomas E Carney
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Ruiyi Zhou
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Christopher Shepard
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Yosuke Kanai
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
- Department of Physics and Astronomy, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
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Zhou R, Kanai Y. Molecular Control of Floquet Topological Phase in Non-adiabatic Thouless Pumping. J Phys Chem Lett 2023; 14:8205-8212. [PMID: 37672485 DOI: 10.1021/acs.jpclett.3c01746] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/08/2023]
Abstract
Non-adiabatic Thouless pumping of electrons is studied in the framework of topological Floquet engineering, particularly with a focus on how atomistic changes to chemical moieties control the emergence of the Floquet topological phase. We employ real-time time-dependent density functional theory to investigate the extent to which the topological invariant, the winding number, is impacted by molecular-level changes to trans-polyacetylene. In particular, several substitutions to trans-polyacetylene are studied to examine different effects on the electronic structure, including the mesomeric effect, inductive effect, and electron conjugation effect. Maximally localized Wannier functions are employed to relate the winding number to the valence bond description by expressing the topological pumping as the transport dynamics of the localized Wannier functions. By further exploiting the gauge invariance of the quantum dynamics in terms of the minimal particle-hole excitations, the topological pumping of electrons can be also represented as a cyclic transition among the bonding and antibonding orbitals. Having connected the topological invariant to the chemical concepts, we demonstrate molecular-level control of the emergence of the Floquet topological phase, presenting an exciting opportunity for the intuitive engineering of molecular systems with such an exotic topological phase.
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Affiliation(s)
- Ruiyi Zhou
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27514, United States
| | - Yosuke Kanai
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27514, United States
- Department of Physics and Astronomy, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27514, United States
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Battula H, Nath M, Mishra S, Jayanty S. Spirocyclic rhodamine B benzoisothiazole derivative: a multi-stimuli fluorescent switch manifesting ethanol-responsiveness, photo responsiveness, and acidochromism. RSC Adv 2023; 13:5134-5148. [PMID: 36777943 PMCID: PMC9910283 DOI: 10.1039/d2ra08022b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Accepted: 01/24/2023] [Indexed: 02/11/2023] Open
Abstract
Multi-stimuli fluorescent switching materials have been extensively employed in chemistry, biochemistry, physics, and materials science. Although rhodamine-based spirolactams have been specifically considered for metal ion sensing by photoluminescence, only some of them manifest photochromic behavior, and further development of rhodamine B (RHB)-based photochromic materials is required. RHB and its cyclic amides are advantageous in various sensing applications owing to their colorimetric responses to external stimulation. Hence, the current work reports a novel multifunctional active molecular material (3',6'-bis(diethylamino))-2-(5-nitrobenzo[c]isothiazol-3-yl)spiro[isoindoline-1,9'-xanthen]-3-one (RHBIT) by linking rhodamine B with 3-amino,5-nitro[2,1]benzoisothiazole (ANB) in a facile synthetic pathway; that perceives both emission color change and switching between off-on states. RHBIT shows acidochromism, photochromism, and pH sensitivity accompanied by unique ethanol responsiveness, with potential applications in anti-counterfeiting and drug delivery. Notably, RHBIT is highly acid sensitive and reverts to the ring-closed form on treatment with triethylamine (base), visible with the naked eye amidst colorless-pink-colorless transformations. On short UV irradiation, RHBIT provides a two-fold rise in the lifetime for the ring-open form in CHCl3 and DCM compared to the spirolactam (closed form). DFT and TDDFT studies provide electronic characterization for the absorption spectra of the open and closed forms. Using the photoresponsive feature of RHBIT, an information protection application has been enacted via a rewritable platform.
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Affiliation(s)
- Himabindu Battula
- Department of Chemistry, Birla Institute of Technology and Science Pilani-Hyderabad Campus, Jawaharnagar, Shameerpet, Kapra Mandal, Medchal Dist. Hyderabad-500078 Telangana State India +91-040-66303998 +91-40-66303561
| | - Moromi Nath
- Department of Chemistry, Indian Institute of TechnologyKharagpur-721302India
| | - Sabyashachi Mishra
- Department of Chemistry, Indian Institute of TechnologyKharagpur-721302India
| | - Subbalakshmi Jayanty
- Department of Chemistry, Birla Institute of Technology and Science Pilani-Hyderabad Campus, Jawaharnagar, Shameerpet, Kapra Mandal, Medchal Dist. Hyderabad-500078 Telangana State India +91-040-66303998 +91-40-66303561
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Trepl T, Schelter I, Kümmel S. Analyzing Excitation-Energy Transfer Based on the Time-Dependent Density Functional Theory in Real Time. J Chem Theory Comput 2022; 18:6577-6587. [PMID: 36268773 DOI: 10.1021/acs.jctc.2c00600] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Excitation-energy transfer is a key step in processes such as photosynthesis that convert light into other forms of energy. Time-dependent density functional theory (DFT) in real time is ideal for the first-principles simulation of such processes due to its computational efficiency. We here demonstrate how real-time DFT can be used for analyzing excitation-energy transfer from first-principles. We discuss several measures of energy transfer that are based solely on the time-dependent density, are well founded in the DFT framework, allow for intuitive understanding and visualization, and reproduce important limiting cases of an analytical model. We demonstrate their usefulness in calculations for model systems, both with static nuclei and in the context of DFT-based Ehrenfest dynamics.
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Affiliation(s)
- T Trepl
- Theoretical Physics IV, University of Bayreuth, Bayreuth95440, Germany
| | - I Schelter
- Theoretical Physics IV, University of Bayreuth, Bayreuth95440, Germany
| | - S Kümmel
- Theoretical Physics IV, University of Bayreuth, Bayreuth95440, Germany
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Battula H, Muduli S, Priyanka Bandi S, Kapoor S, Mishra S, Aggarwal H, Vamsi krishna Venuganti V, Jayanty S. Selective and swift-responsive “off-on” rhodamine B based chemosensors: Recognition of multi-metal ions, on-site sensing of Fe(III) in water samples and bioimaging in aqueous media. J Photochem Photobiol A Chem 2022. [DOI: 10.1016/j.jphotochem.2021.113748] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Mattiat J, Luber S. Recent Progress in the Simulation of Chiral Systems with Real Time Propagation Methods. Helv Chim Acta 2021. [DOI: 10.1002/hlca.202100154] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Johann Mattiat
- Department of Chemistry University of Zurich Winterthurerstrasse 190 CH-8057 Zurich Switzerland
| | - Sandra Luber
- Department of Chemistry University of Zurich Winterthurerstrasse 190 CH-8057 Zurich Switzerland
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Shepard C, Zhou R, Yost DC, Yao Y, Kanai Y. Simulating electronic excitation and dynamics with real-time propagation approach to TDDFT within plane-wave pseudopotential formulation. J Chem Phys 2021; 155:100901. [PMID: 34525811 DOI: 10.1063/5.0057587] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We give a perspective on simulating electronic excitation and dynamics using the real-time propagation approach to time-dependent density functional theory (RT-TDDFT) in the plane-wave pseudopotential formulation. RT-TDDFT is implemented in various numerical formalisms in recent years, and its practical application often dictates the most appropriate implementation of the theory. We discuss recent developments and challenges, emphasizing numerical aspects of studying real systems. Several applications of RT-TDDFT simulation are discussed to highlight how the approach is used to study interesting electronic excitation and dynamics phenomena in recent years.
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Affiliation(s)
- Christopher Shepard
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27514, USA
| | - Ruiyi Zhou
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27514, USA
| | - Dillon C Yost
- Department of Materials Science and Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02142, USA
| | - Yi Yao
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27514, USA
| | - Yosuke Kanai
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27514, USA
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Zhou R, Yost DC, Kanai Y. First-Principles Demonstration of Nonadiabatic Thouless Pumping of Electrons in a Molecular System. J Phys Chem Lett 2021; 12:4496-4503. [PMID: 33956458 DOI: 10.1021/acs.jpclett.1c01037] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
We demonstrate nonadiabatic Thouless pumping of electrons in trans-polyacetylene in the framework of Floquet engineering using first-principles theory. We identify the regimes in which the quantized pump is operative with respect to the driving electric field for a time-dependent Hamiltonian. By employing the time-dependent maximally localized Wannier functions in real-time time-dependent density functional theory simulation, we connect the winding number, a topological invariant, to a molecular-level understanding of the quantized pumping. While the pumping dynamics constitutes the opposing movement of the Wannier functions that represent both double and single bonds, the resulting current is unidirectional due to the greater number of double-bond electrons. Using a gauge-invariant formulation called dynamical transition orbitals, an alternative viewpoint on the nonequilibrium dynamics is obtained in terms of the particle-hole excitation. A single time-dependent transition orbital is found to be largely responsible for the observed quantized pumping. In this representation, the pumping dynamics manifests itself in the dynamics of this single orbital as it undergoes changes from its π bonding orbital character at equilibrium to acquiring resonance and antibonding character in the driving cycle. The work demonstrates the Floquet engineering of the nonadiabatic topological state in an extended molecular system, paving the way for experimental realization of the new quantum material phase.
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Affiliation(s)
- Ruiyi Zhou
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Dillon C Yost
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
- Department of Materials Science and Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Yosuke Kanai
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
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