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Cruz‐Martínez H, Rojas‐Chávez H, Santiago‐Silva L, López‐Sosa L, Calaminici P. Metal Dimers-Doped h-BN Structures as Novel Toxic Gases Sensors With Enhanced Sensitivity Properties: An ADFT Study. J Comput Chem 2025; 46:e70062. [PMID: 39932153 PMCID: PMC11827289 DOI: 10.1002/jcc.70062] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2024] [Revised: 01/25/2025] [Accepted: 01/28/2025] [Indexed: 02/16/2025]
Abstract
Toxic gases monitoring and detection are fundamental to lessening public health problems. Therefore, in this work, to explore emergent sensor materials, 3d-metal dimers-doped hexagonal boron nitride (h-BN) structures were investigated employing auxiliary density functional theory (ADFT) as novel CO and NO gas sensors. Firstly, the stabilities of Co2, Ni2, and Cu2 dimers deposited on defective h-BN were determined. Then, sensitivities of 3d-metal dimers-doped h-BN structures towards the NO and CO gases were investigated. It was found that the interaction energies of these 3d-metal dimers embedded on defective h-BN are higher than those deposited on pristine h-BN structure, which indicates that the 3d-metal dimers exhibit good stability on defective h-BN. Moreover, this work demonstrated that the CO and NO adsorption energies on 3d-metal dimers-doped h-BN structures are higher than those computed in the literature for pristine h-BN structure. Consequently, the here considered 3d-metal dimers-doped h-BN structures can be good candidates for toxic CO and NO gas detection.
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Affiliation(s)
- H. Cruz‐Martínez
- Tecnológico Nacional de MéxicoInstituto Tecnológico del Valle de EtlaOaxacaMexico
| | - H. Rojas‐Chávez
- Tecnológico Nacional de MéxicoInstituto Tecnológico de Tláhuac IIMexico CityMexico
| | - L. Santiago‐Silva
- Tecnológico Nacional de MéxicoInstituto Tecnológico del Valle de EtlaOaxacaMexico
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Santiago-Silva L, Cruz-Martínez H, Rojas-Chávez H, López-Sosa L, Calaminici P. Structural transformation in Pd nanoclusters induced by Cu doping: an ADFT study. J Mol Model 2025; 31:79. [PMID: 39928171 PMCID: PMC11811464 DOI: 10.1007/s00894-025-06305-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2024] [Accepted: 01/28/2025] [Indexed: 02/11/2025]
Abstract
CONTEXT Transition metal nanoparticles have gained great importance due to their promising applications in various fields such as energy, electronics, medicine, and agriculture. For these applications, materials with outstanding properties are currently required. Therefore, different strategies have been established to improve the properties of pure nanoparticles such as alloying, doping, and formation of composites. Among these strategies, doping is gaining great importance because it has been demonstrated that doped nanoparticles have better properties than pure nanoparticles. Therefore, it is essential to know the role of doping on the structures and properties of clusters with more than 16 atoms. Consequently, in this study, we propose a theoretical study of structures and properties focusing on pure Pd19, Cu-doped Pd18 (Pd18Cu), and Cu2-doped Pd17 (Pd17Cu2) nanoclusters and thus elucidate the role of Cu atoms on the structures and properties of larger doped Pd nanoclusters than those already presented in the literature. We have selected a nanocluster with 19 atoms since the most stable structure of this system is characterized by defined shapes such as octahedron or double-icosahedron. METHODS Ground state structures and properties of Pd19, Pd18Cu, and Pd17Cu2 nanoclusters were studied using the auxiliary density functional theory (ADFT), as implemented in the deMon2k code. For obtaining the ground state structures of Pd19, Pd18Cu, and Pd17Cu2 nanoclusters, several dozen initial structures were taken along Born-Oppenheimer molecular dynamics (BOMD) trajectories and subsequently optimized without symmetry restrictions. The optimizations were performed with the revised PBE functional in combination with TZVP-GGA for the Cu atoms and using an 18-electron QECP|SD basis set for the Pd atoms. Different energetic and electronic properties were calculated for the most stable structures of Pd19, Pd18Cu, and Pd17Cu2 nanoclusters. Interestingly, when the Pd nanocluster is doped with two Cu atoms (Pd17Cu2), there is a structural transition, because the most stable structures for Pd19 and Pd18Cu are icosahedral. While the Pd17Cu nanocluster is characterized for a double-icosahedral-base structure. The binding energy per atom increases when the Cu concentration in the nanoclusters increases. According to the HOMO-LUMO gap, the chemical reactivity of the nanoclusters tends to increase as the Cu content in the nanoclusters increases.
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Affiliation(s)
- L Santiago-Silva
- Tecnológico Nacional de México, Instituto Tecnológico del Valle de Etla, Abasolo S/N, Barrio del Agua Buena, Santiago Suchilquitongo, 68230, Oaxaca, Mexico
| | - H Cruz-Martínez
- Tecnológico Nacional de México, Instituto Tecnológico del Valle de Etla, Abasolo S/N, Barrio del Agua Buena, Santiago Suchilquitongo, 68230, Oaxaca, Mexico.
| | - H Rojas-Chávez
- Tecnológico Nacional de México, Instituto Tecnológico de Tláhuac II, Camino Real 625, Jardines del Llano, 13550, San Juan Ixtayopan, Tláhuac, Ciudad de México , Mexico
| | - L López-Sosa
- Departamento de Química, CINVESTAV, Instituto Politécnico Nacional 2508, 07360, San Pedro Zacatenco, Gustavo A. Madero, Ciudad de Mexico, Mexico
| | - P Calaminici
- Departamento de Química, CINVESTAV, Instituto Politécnico Nacional 2508, 07360, San Pedro Zacatenco, Gustavo A. Madero, Ciudad de Mexico, Mexico.
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Hernández-Segura LI, Olvera-Rubalcava FA, Flores-Moreno R, Calaminici P, Köster AM. Exchange-correlation kernel for perturbation dependent auxiliary functions in auxiliary density perturbation theory. J Mol Model 2024; 30:302. [PMID: 39115689 PMCID: PMC11310252 DOI: 10.1007/s00894-024-06091-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2024] [Accepted: 07/23/2024] [Indexed: 08/11/2024]
Abstract
CONTEXT Analytic exchange-correlation kernel formulations are of the outermost importance for density functional theory (DFT) perturbation calculations. In this paper, the working equation for the exchange-correlation kernel of the generalized gradient approximation (GGA) for perturbation dependent auxiliary functions is derived and discussed in the framework of auxiliary density functional theory (ADFT). The presented new formulation is extended to the unrestricted approach, too. A comprehensive discussion of the implementation of the GGA ADFT kernel, using either the native exchange-correlation functional implementations in deMon2k or the ones from the LibXC library, is given. Calculations with analytic exchange-correlation kernels are compared to their finite difference counterparts. The obtained results are in quantitative agreement. Nevertheless, analytic GGA ADFT kernel implementations show substantial improvement in the computational performance. Similar results are reported for analytic second derivatives of effective core potential (ECP) and model core potential (MCP) matrix elements when compared to their finite difference counterparts in molecular frequency analyses. METHOD All calculations are performed in the framework of ADFT as implemented in deMon2k. In the ADFT analytic frequency calculations, auxiliary density perturbation theory was used. The underlying two-center exchange-correlation kernel matrix elements are calculated by numerical integration either with analytic or finite difference kernel expressions. Validation calculations are performed with the VWN and PBE functionals employing DFT-optimized DZVP basis sets in conjunction with automatically generated GEN-A2 auxiliary density function sets. In the (Pt3Cu)n cluster benchmark calculations, the RPBE functional was used. For Pt atoms, the quasi-relativistic LANL2DZ effective core potential with the corresponding valence basis set was employed, whereas for Cu atoms, the all-electron DFT-optimized TZVP basis was applied. The auxiliary density was expanded by the automatically generated GEN-A2* auxiliary function set. We run all benchmark calculations in parallel on 24 cores.
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Affiliation(s)
- Luis I Hernández-Segura
- Chemistry Department, CINVESTAV, Av. Instituto Politecnico Nacional 2508, Col. San Pedro Zacatenco, Del. Gustavo A. Madero, Mexico City, C.P. 07360, Mexico.
| | - Flor A Olvera-Rubalcava
- Chemistry Department, CINVESTAV, Av. Instituto Politecnico Nacional 2508, Col. San Pedro Zacatenco, Del. Gustavo A. Madero, Mexico City, C.P. 07360, Mexico
| | - Roberto Flores-Moreno
- Departamento de Química, Universidad de Guadalajara, Blvd. Gral. Marcelino García Barragán 1421, Guadalajara, Jal., C.P. 44430, Mexico
| | - Patrizia Calaminici
- Chemistry Department, CINVESTAV, Av. Instituto Politecnico Nacional 2508, Col. San Pedro Zacatenco, Del. Gustavo A. Madero, Mexico City, C.P. 07360, Mexico
| | - Andreas M Köster
- Chemistry Department, CINVESTAV, Av. Instituto Politecnico Nacional 2508, Col. San Pedro Zacatenco, Del. Gustavo A. Madero, Mexico City, C.P. 07360, Mexico.
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Galindo-Uribe CD, Geudtner G, Calaminici P, Solorza-Feria O. One-Pot Graphene Supported Pt 3Cu Nanoparticles-From Theory towards an Effective Molecular Oxygen Reduction Reaction Catalyst. Molecules 2023; 28:5072. [PMID: 37446734 DOI: 10.3390/molecules28135072] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Revised: 06/20/2023] [Accepted: 06/21/2023] [Indexed: 07/15/2023] Open
Abstract
In this work, recent research progresses in the formation of Pt3Cu nanoparticles onto the surface of graphene are described, and the obtained results are contrasted with previously published theoretical studies. To form these nanoparticles, tetrabutylammonium hexachloroplatinate, and copper acetylacetonate are used as platinum and copper precursors, respectively. Oleylamine is used as a reductor and a solvent. The obtained catalyst is characterized via X-ray diffraction (XRD), transmission electron microscopy (TEM), scanning electron microscopy (SEM), and energy dispersive spectroscopy X-ray (EDS). To assess the catalytic activity, the graphene-supported Pt3Cu material is tested with cyclic voltammetry, "CO stripping", and oxygen reduction reaction potentiodynamic curves to find the nature and the intrinsic electrochemical activity of the material. It can be observed that the tetrabutylammonium cation plays a critical role in anchoring and supporting nanoparticles over graphene, from which a broad discussion about the true nature of the anchoring mechanism was derived. The growth mechanism of the nanoparticles on the surface of graphene was observed, supporting the conducted theoretical models. With this study, a reliable, versatile, and efficient synthesis of nanocatalysts is presented, demonstrating the potentiality of Pt3Cu/graphene as an effective cathode catalyst. This study demonstrates the importance of reliable ab inito theoretical results as a useful source of information for the synthesis of the Pt3Cu alloy system.
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Affiliation(s)
- Carlos Daniel Galindo-Uribe
- Chemistry Department, Research Center for Advanced Studies (CINVESTAV), Av. Instituto Politécnico Nacional 2508, Col. San Pedro Zacatenco, Del. Gustavo A. Madero, Mexico City 07360, Mexico
| | - Gerald Geudtner
- Chemistry Department, Research Center for Advanced Studies (CINVESTAV), Av. Instituto Politécnico Nacional 2508, Col. San Pedro Zacatenco, Del. Gustavo A. Madero, Mexico City 07360, Mexico
| | - Patrizia Calaminici
- Chemistry Department, Research Center for Advanced Studies (CINVESTAV), Av. Instituto Politécnico Nacional 2508, Col. San Pedro Zacatenco, Del. Gustavo A. Madero, Mexico City 07360, Mexico
| | - Omar Solorza-Feria
- Chemistry Department, Research Center for Advanced Studies (CINVESTAV), Av. Instituto Politécnico Nacional 2508, Col. San Pedro Zacatenco, Del. Gustavo A. Madero, Mexico City 07360, Mexico
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Ruiz-Villalobos D, López-Sosa L, García-Hilerio B, Calaminici P, Cruz-Martínez H. Stability and activity of PdCu clusters embedded on pyridinic N-doped graphene: a density functional theory investigation. Mol Phys 2023. [DOI: 10.1080/00268976.2023.2192826] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/03/2023]
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Galindo-Uribe CD, Calaminici P, Solorza-Feria O. First-principle investigation of structures and energy properties of $$({\textbf {Pt}}_{3}{} {\textbf {Cu}})_{{\varvec{n}}}$$, n = 10–11 nanoclusters. Theor Chem Acc 2023. [DOI: 10.1007/s00214-023-02963-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]
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Cruz-Martínez H, Rojas-Chávez H, Valdés-Madrigal MA, López-Sosa L, Calaminici P. Stability and catalytic properties of Pt–Ni clusters supported on pyridinic N-doped graphene nanoflakes: an auxiliary density functional theory study. Theor Chem Acc 2022. [DOI: 10.1007/s00214-022-02904-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Stability, Energetic, and Reactivity Properties of NiPd Alloy Clusters Deposited on Graphene with Defects: A Density Functional Theory Study. MATERIALS 2022; 15:ma15134710. [PMID: 35806834 PMCID: PMC9267918 DOI: 10.3390/ma15134710] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/17/2022] [Revised: 02/02/2022] [Accepted: 02/06/2022] [Indexed: 02/04/2023]
Abstract
Graphene with defects is a vital support material since it improves the catalytic activity and stability of nanoparticles. Here, a density functional theory study was conducted to investigate the stability, energy, and reactivity properties of NinPdn (n = 1–3) clusters supported on graphene with different defects (i.e., graphene with monovacancy and pyridinic N-doped graphene with one, two, and three N atoms). On the interaction between the clusters and graphene with defects, the charge was transferred from the clusters to the modified graphene, and it was observed that the binding energy between them was substantially higher than that previously reported for Pd-based clusters supported on pristine graphene. The vertical ionization potential calculated for the clusters supported on modified graphene decreased compared with that calculated for free clusters. In contrast, vertical electron affinity values for the clusters supported on graphene with defects increased compared with those calculated for free clusters. In addition, the chemical hardness calculated for the clusters supported on modified graphene was decreased compared with free clusters, suggesting that the former may exhibit higher reactivity than the latter. Therefore, it could be inferred that graphene with defects is a good support material because it enhances the stability and reactivity of the Pd-based alloy clusters supported on PNG.
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