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Barclay MS, Cunningham PD, Pascual G, Roy SK, Patten LK, Susumu K, Policht VR, Mathur D, Meares A, Lee J, Yurke B, Knowlton WB, Davis PH, Pensack RD, Medintz IL, Melinger JS, Turner DB. Distinguishing packing configurations of molecular dimers using excited-state absorption peaks in two-dimensional electronic spectra. J Chem Phys 2025; 162:174303. [PMID: 40309947 DOI: 10.1063/5.0258934] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2025] [Accepted: 04/10/2025] [Indexed: 05/02/2025] Open
Abstract
Packing conformations of molecular aggregates are known to strongly influence the locations and intensities of spectral peaks. Here, we develop the third-order nonlinear spectroscopy signals for a purely electronic model of a molecular dimer, which is a prototype aggregate system. The model-which focuses on excited-state absorption (ESA) pathways in two-dimensional electronic spectra-reveals that orientational averaging leads to diagnostic ESA peak locations for H- and J-dimers. We constructed DNA-templated dimers of cyanine molecules as representative systems and used ultrabroadband two-dimensional electronic spectroscopy measurements to support the predicted signatures arising from the theoretical model. Fitting of steady-state spectra supports the assigned packing conformations. The results elucidate how ESA peaks can be diagnostic spectral signatures of packing conformation. This work lays the foundation for future studies that can include the complicating effects of vibronic states and additional electronic levels.
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Affiliation(s)
- Matthew S Barclay
- Micron School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, USA
| | - Paul D Cunningham
- Electronics Science and Technology Division Code 6800, U.S. Naval Research Laboratory, Washington, District of Columbia 20375, USA
| | - Gissela Pascual
- Micron School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, USA
| | - Simon K Roy
- Micron School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, USA
| | - Lance K Patten
- Micron School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, USA
| | - Kimihiro Susumu
- Optical Sciences Division, Code 5600, U.S. Naval Research Laboratory, Washington, District of Columbia 20375, USA
| | - Veronica R Policht
- Electronics Science and Technology Division Code 6800, U.S. Naval Research Laboratory, Washington, District of Columbia 20375, USA
| | - Divita Mathur
- Department of Chemistry, Case Western Reserve University, Cleveland, Ohio 44106, USA
| | - Adam Meares
- Center for Biomolecular Science and Engineering Code 6900, U.S. Naval Research Laboratory, Washington, District of Columbia 20375, USA
| | - Jeunghoon Lee
- Micron School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, USA
- Department of Chemistry and Biochemistry, Boise State University, Boise, Idaho 83725, USA
| | - Bernard Yurke
- Micron School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, USA
- Department of Electrical and Computer Engineering, Boise State University, Boise, Idaho 83725, USA
| | - William B Knowlton
- Micron School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, USA
- Department of Electrical and Computer Engineering, Boise State University, Boise, Idaho 83725, USA
| | - Paul H Davis
- Micron School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, USA
- Center for Advanced Energy Studies, Idaho Falls, Idaho 83401, USA
| | - Ryan D Pensack
- Micron School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, USA
| | - Igor L Medintz
- Center for Biomolecular Science and Engineering Code 6900, U.S. Naval Research Laboratory, Washington, District of Columbia 20375, USA
| | - Joseph S Melinger
- Electronics Science and Technology Division Code 6800, U.S. Naval Research Laboratory, Washington, District of Columbia 20375, USA
| | - Daniel B Turner
- Micron School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, USA
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Bubilaitis V, Abramavicius D. Signatures of exciton-exciton annihilation in 2DES spectra including up to six-wave mixing processes. J Chem Phys 2024; 161:104106. [PMID: 39248235 DOI: 10.1063/5.0223724] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2024] [Accepted: 08/21/2024] [Indexed: 09/10/2024] Open
Abstract
Two-dimensional electronic spectroscopy (2DES) is a powerful spectroscopic tool that allows us to study the dynamics of excited states. Exciton-exciton annihilation is at least a fifth order process, which corresponds to intrachromophoric internal conversion from the double-excited high-energy chromophoric state into the single-excited state of the same chromophore. At high excitation intensities, this effect becomes apparent in standard 2DES and can be inspected via high order nK1⃗-nK2⃗+K3⃗ nonlinear processes. We calculate 2DES based on K1⃗-K2⃗+K3⃗ and 2K1⃗-2K2⃗+K3⃗ wave mixing processes to reveal exciton-exciton annihilation (EEA) induced exciton symmetry breaking, which occurs at high excitation intensities. We present the general theory that captures all these processes for bosonic and paulionic quasiparticles in a unified way and demonstrate that the NEEs can be easily utilized for highly nonlinear two-dimensional spectra calculations by employing phase cycling for separating various phase matching conditions. The approach predicts various excitonic third- to fifth-order features; however, due to high excitation intensities, contributions of different order processes become comparable and overlap, i.e., the signals no longer can be associated with well-defined order-to-the-field contributions. In addition, EEA leads to breaking of the exciton symmetries, thus enabling population of dark excitons. Such effects are due to the local nature of the EEA process.
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Affiliation(s)
- Vytautas Bubilaitis
- Institute of Chemical Physics, Physics Faculty, Vilnius University, Sauletekio ave. 9-III, Vilnius, Lithuania
| | - Darius Abramavicius
- Institute of Chemical Physics, Physics Faculty, Vilnius University, Sauletekio ave. 9-III, Vilnius, Lithuania
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Zazubovich V, Jankowiak R. High-Resolution Frequency-Domain Spectroscopic and Modeling Studies of Photosystem I (PSI), PSI Mutants and PSI Supercomplexes. Int J Mol Sci 2024; 25:3850. [PMID: 38612659 PMCID: PMC11011720 DOI: 10.3390/ijms25073850] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2024] [Revised: 03/23/2024] [Accepted: 03/26/2024] [Indexed: 04/14/2024] Open
Abstract
Photosystem I (PSI) is one of the two main pigment-protein complexes where the primary steps of oxygenic photosynthesis take place. This review describes low-temperature frequency-domain experiments (absorption, emission, circular dichroism, resonant and non-resonant hole-burned spectra) and modeling efforts reported for PSI in recent years. In particular, we focus on the spectral hole-burning studies, which are not as common in photosynthesis research as the time-domain spectroscopies. Experimental and modeling data obtained for trimeric cyanobacterial Photosystem I (PSI3), PSI3 mutants, and PSI3-IsiA18 supercomplexes are analyzed to provide a more comprehensive understanding of their excitonic structure and excitation energy transfer (EET) processes. Detailed information on the excitonic structure of photosynthetic complexes is essential to determine the structure-function relationship. We will focus on the so-called "red antenna states" of cyanobacterial PSI, as these states play an important role in photochemical processes and EET pathways. The high-resolution data and modeling studies presented here provide additional information on the energetics of the lowest energy states and their chlorophyll (Chl) compositions, as well as the EET pathways and how they are altered by mutations. We present evidence that the low-energy traps observed in PSI are excitonically coupled states with significant charge-transfer (CT) character. The analysis presented for various optical spectra of PSI3 and PSI3-IsiA18 supercomplexes allowed us to make inferences about EET from the IsiA18 ring to the PSI3 core and demonstrate that the number of entry points varies between sample preparations studied by different groups. In our most recent samples, there most likely are three entry points for EET from the IsiA18 ring per the PSI core monomer, with two of these entry points likely being located next to each other. Therefore, there are nine entry points from the IsiA18 ring to the PSI3 trimer. We anticipate that the data discussed below will stimulate further research in this area, providing even more insight into the structure-based models of these important cyanobacterial photosystems.
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Affiliation(s)
- Valter Zazubovich
- Department of Physics, Concordia University, Montreal, QC H4B 1R6, Canada
| | - Ryszard Jankowiak
- Department of Chemistry, Kansas State University, Manhattan, KS 66506, USA
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Sanders SE, Zhang M, Javed A, Ogilvie JP. Expanding the bandwidth of fluorescence-detected two-dimensional electronic spectroscopy using a broadband continuum probe pulse pair. OPTICS EXPRESS 2024; 32:8887-8902. [PMID: 38571135 DOI: 10.1364/oe.516963] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2024] [Accepted: 02/16/2024] [Indexed: 04/05/2024]
Abstract
We demonstrate fluorescence-detected two-dimensional electronic spectroscopy (F-2DES) with a broadband, continuum probe pulse pair in the pump-probe geometry. The approach combines a pump pulse pair generated by an acousto-optic pulse-shaper with precise control of the relative pump pulse phase and time delay with a broadband, continuum probe pulse pair created using the Translating Wedge-based Identical pulses eNcoding System (TWINS). The continuum probe expands the spectral range of the detection axis and lengthens the waiting times that can be accessed in comparison to implementations of F-2DES using a single pulse-shaper. We employ phase-cycling of the pump pulse pair and take advantage of the separation of signals in the frequency domain to isolate rephasing and non-rephasing signals and optimize the signal-to-noise ratio. As proof of principle, we demonstrate broadband F-2DES on a laser dye and bacteriochlorophyll a.
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