1
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Cai Y, Wang T, Zhao L. Fluctuation theorems in general relativistic stochastic thermodynamics. Phys Rev E 2025; 111:024102. [PMID: 40103068 DOI: 10.1103/physreve.111.024102] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2024] [Accepted: 01/09/2025] [Indexed: 03/20/2025]
Abstract
Based on the recently proposed framework of general relativistic stochastic mechanics [J. Stat. Phys. 190, 193 (2023)1572-961310.1007/s10955-023-03204-5; J. Stat. Phys. 190, 181 (2023)1572-961310.1007/s10955-023-03205-4] and stochastic thermodynamics [SciPost Phys. Core 7, 082 (2024)2666-936610.21468/SciPostPhysCore.7.4.082] at the ensemble level, this work focuses on general relativistic stochastic thermodynamics at the trajectory level. The first law of stochastic thermodynamics is reformulated, and the fluctuation theorems are proved on this level, with an emphasis on maintaining fully general covariance and on the choice of observers.
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Affiliation(s)
- Yifan Cai
- Nankai University, School of Physics, Tianjin 300071, China
| | - Tao Wang
- Nankai University, School of Physics, Tianjin 300071, China
| | - Liu Zhao
- Nankai University, School of Physics, Tianjin 300071, China
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2
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Kolchinsky A, Marvian I, Gokler C, Liu ZW, Shor P, Shtanko O, Thompson K, Wolpert D, Lloyd S. Maximizing Free Energy Gain. ENTROPY (BASEL, SWITZERLAND) 2025; 27:91. [PMID: 39851711 PMCID: PMC11765171 DOI: 10.3390/e27010091] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2024] [Revised: 12/26/2024] [Accepted: 12/30/2024] [Indexed: 01/26/2025]
Abstract
Maximizing the amount of work harvested from an environment is important for a wide variety of biological and technological processes, from energy-harvesting processes such as photosynthesis to energy storage systems such as fuels and batteries. Here, we consider the maximization of free energy-and by extension, the maximum extractable work-that can be gained by a classical or quantum system that undergoes driving by its environment. We consider how the free energy gain depends on the initial state of the system while also accounting for the cost of preparing the system. We provide simple necessary and sufficient conditions for increasing the gain of free energy by varying the initial state. We also derive simple formulae that relate the free energy gained using the optimal initial state rather than another suboptimal initial state. Finally, we demonstrate that the problem of finding the optimal initial state may have two distinct regimes, one easy and one difficult, depending on the temperatures used for preparation and work extraction. We illustrate our results on a simple model of an information engine.
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Affiliation(s)
- Artemy Kolchinsky
- Department of Medicine and Life Sciences, Universitat Pompeu Fabra, 08003 Barcelona, Spain;
| | - Iman Marvian
- Physics and Electrical Engineering, Duke University, Durham, NC 27708, USA;
| | - Can Gokler
- School of Engineering and Applied Sciences, Harvard University, Cambridge, MA 02138, USA;
| | - Zi-Wen Liu
- Yau Mathematical Sciences Center, Tsinghua University, Beijing 100084, China;
| | - Peter Shor
- Department of Mathematics, Center for Theoretical Physics and CSAIL, MIT, Cambridge, MA 02139, USA;
| | - Oles Shtanko
- IBM Quantum Almaden, San Jose, CA 95120, USA;
- Department of Physics, MIT, Cambridge, MA 02139, USA
| | | | - David Wolpert
- Santa Fe Institute, Santa Fe, NM 87501, USA;
- Center for Bio-Social Complex Systems, Arizona State University, Tempe, AZ 85287, USA
| | - Seth Lloyd
- Department of Physics, MIT, Cambridge, MA 02139, USA
- Department of Mechanical Engineering, MIT, Cambridge, MA 02139, USA
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3
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Crutchfield JP, Aghamohammadi C. Not All Fluctuations Are Created Equal: Spontaneous Variations in Thermodynamic Function. ENTROPY (BASEL, SWITZERLAND) 2024; 26:894. [PMID: 39593839 PMCID: PMC11593295 DOI: 10.3390/e26110894] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2024] [Revised: 10/17/2024] [Accepted: 10/17/2024] [Indexed: 11/28/2024]
Abstract
We identify macroscopic functioning arising during a thermodynamic system's typical and atypical behaviors, thereby describing system operations over the entire set of fluctuations. We show how to use the information processing second law to determine functionality for atypical realizations and how to calculate the probability of distinct modalities occurring via the large-deviation rate function, extended to include highly correlated, memoryful environments and systems. Altogether, the results complete a theory of functional fluctuations for complex thermodynamic nanoscale systems operating over finite periods. In addition to constructing the distribution of functional modalities, one immediate consequence is a cautionary lesson: ascribing a single, unique functional modality to a thermodynamic system, especially one on the nanoscale, can be misleading, likely masking an array of simultaneous, parallel thermodynamic transformations that together may also be functional. In this way, functional fluctuation theory alters how we conceive of the operation of biological cellular processes, the goals of engineering design, and the robustness of evolutionary adaptation.
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Affiliation(s)
- James P. Crutchfield
- Complexity Sciences Center and Department of Physics, University of California at Davis, One Shields Avenue, Davis, CA 95616, USA;
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4
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Theurel D. Incompatible observables in classical physics: A closer look at measurement in Hamiltonian mechanics. Phys Rev E 2024; 110:024124. [PMID: 39294991 DOI: 10.1103/physreve.110.024124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Accepted: 01/31/2024] [Indexed: 09/21/2024]
Abstract
Quantum theory famously entails the existence of incompatible measurements, pairs of system observables which cannot be simultaneously measured to arbitrary precision. Incompatibility is widely regarded to be a uniquely quantum phenomenon, linked to failure to commute of quantum operators. Even in the face of deep parallels between quantum commutators and classical Poisson brackets, no connection has been established between the Poisson algebra and any intrinsic limitations to classical measurement. Here I examine measurement in classical Hamiltonian physics as a process involving the joint evolution of an object-system and a finite-temperature measuring apparatus. Instead of the ideal measurement capable of extracting information without disturbing the system, I find a Heisenberg-like precision-disturbance relation: Measuring an observable leaves all Poisson-commuting observables undisturbed but inevitably disturbs all non-Poisson-commuting observables. In this classical uncertainty relation the role of h-bar is played by an apparatus-specific quantity, q-bar. While this is not a universal constant, the analysis suggests that q-bar takes a finite positive value for any apparatus that can be built. (Specifically: q-bar vanishes in the model only in the unreachable limit of zero absolute temperature.) I show that a classical version of Ozawa's model of quantum measurement [Ozawa, Phys. Rev. Lett. 60, 385 (1988)0031-900710.1103/PhysRevLett.60.385], originally proposed as a means to violate Heisenberg's relation, does not violate the classical relation. If this result were to generalize to all models of measurement, then incompatibility would prove to be a feature not only of quantum, but of classical physics too. Put differently: The approach presented here points the way to studying the (Bayesian) epistemology of classical physics, which was until now assumed to be trivial. It now seems possible that it is nontrivial and bears a resemblance to the quantum formalism. The present findings may be of interest to researchers working on foundations of quantum mechanics, particularly for ψ-epistemic interpretations. More practically, there may be applications in the fields of precision measurement, nanoengineering, and molecular machines.
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Affiliation(s)
- David Theurel
- Department of Physics, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
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5
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Yan L, Ge X. A Thermodynamic Study on Information Power in Communication Systems. ENTROPY (BASEL, SWITZERLAND) 2024; 26:650. [PMID: 39202120 PMCID: PMC11353885 DOI: 10.3390/e26080650] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/20/2024] [Revised: 07/29/2024] [Accepted: 07/29/2024] [Indexed: 09/03/2024]
Abstract
Modern information theory pioneered by Shannon provides the mathematical foundation of information transmission and compression. However, the physical (and especially the energetic) nature of the information has been elusive. While the processing of information incurs inevitable energy dissipation, it is possible for communication systems to harness information to perform useful work. In this article, we prove that the thermodynamic cost (that is, the entropy production of the communication system) is at least equal to the information transmitted. Based on this result, a model of a communication heat engine is proposed, which can extract work from the heat bath by utilizing the transmission of information. The communication heat engine integrates the manipulation of both energy and information so that both information and power may be transmitted in parallel. The information transmission rate and the information power of the communication heat engine are derived from a pure thermodynamics argument. We find that the information power of the communication heat engine can be increased by increasing the number of communication channels, but the absolute energy efficiency of the heat engine first increases and then decreases after the number of channels of the system exceeds a threshold. The proposed model and definitions provide a new way to think of a classical communication system from a thermodynamic perspective.
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6
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Chittari SS, Lu Z. Revisiting kinetic Monte Carlo algorithms for time-dependent processes: From open-loop control to feedback control. J Chem Phys 2024; 161:044104. [PMID: 39052082 DOI: 10.1063/5.0217316] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2024] [Accepted: 07/03/2024] [Indexed: 07/27/2024] Open
Abstract
Simulating stochastic systems with feedback control is challenging due to the complex interplay between the system's dynamics and the feedback-dependent control protocols. We present a single-step-trajectory probability analysis to time-dependent stochastic systems. Based on this analysis, we revisit several time-dependent kinetic Monte Carlo (KMC) algorithms designed for systems under open-loop-control protocols. Our analysis provides a unified alternative proof to these algorithms, summarized into a pedagogical tutorial. Moreover, with the trajectory probability analysis, we present a novel feedback-controlled KMC algorithm that accurately captures the dynamics systems controlled by an external signal based on the measurements of the system's state. Our method correctly captures the system dynamics and avoids the artificial Zeno effect that arises from incorrectly applying the direct Gillespie algorithm to feedback-controlled systems. This work provides a unified perspective on existing open-loop-control KMC algorithms and also offers a powerful and accurate tool for simulating stochastic systems with feedback control.
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Affiliation(s)
- Supraja S Chittari
- Department of Chemistry, University of North Carolina-Chapel Hill, Chapel Hill, North Carolina 27599, USA
| | - Zhiyue Lu
- Department of Chemistry, University of North Carolina-Chapel Hill, Chapel Hill, North Carolina 27599, USA
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7
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Cocconi L, Chen L. Efficiency of an autonomous, dynamic information engine operating on a single active particle. Phys Rev E 2024; 110:014602. [PMID: 39161009 DOI: 10.1103/physreve.110.014602] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Accepted: 06/10/2024] [Indexed: 08/21/2024]
Abstract
The Szilard engine stands as a compelling illustration of the intricate interplay between information and thermodynamics. While at thermodynamic equilibrium, the apparent breach of the second law of thermodynamics was reconciled by Landauer and Bennett's insights into memory writing and erasure, recent extensions of these concepts into regimes featuring active fluctuations have unveiled the prospect of exceeding Landauer's bound, capitalizing on information to divert free energy from dissipation towards useful work. To explore this question further, we investigate an autonomous dynamic information engine, addressing the thermodynamic consistency of work extraction and measurement costs by extending the phase space to incorporate an auxiliary system, which plays the role of an explicit measurement device. The nonreciprocal coupling between active particle and measurement device introduces a feedback control loop, and the cost of measurement is quantified through a suitably defined auxiliary entropy production. The study considers different measurement scenarios, highlighting the role of measurement precision in determining engine efficiency.
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8
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Zeng Q, Li R, Wang J. Nonequilibrium Effects on Information Recoverability of the Noisy Channels. ENTROPY (BASEL, SWITZERLAND) 2023; 25:1589. [PMID: 38136470 PMCID: PMC10742946 DOI: 10.3390/e25121589] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2023] [Revised: 08/23/2023] [Accepted: 11/18/2023] [Indexed: 12/24/2023]
Abstract
We investigated the impact of nonequilibrium conditions on the transmission and recovery of information through noisy channels. By measuring the recoverability of messages from an information source, we demonstrate that the ability to recover information is connected to the nonequilibrium behavior of the information flow, particularly in terms of sequential information transfer. We discovered that the mathematical equivalence of information recoverability and entropy production characterizes the dissipative nature of information transfer. Our findings show that both entropy production (or recoverability) and mutual information increase monotonically with the nonequilibrium strength of information dynamics. These results suggest that the nonequilibrium dissipation cost can enhance the recoverability of noise messages and improve the quality of information transfer. Finally, we propose a simple model to test our conclusions and found that the numerical results support our findings.
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Affiliation(s)
- Qian Zeng
- State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry, Changchun 130022, China
| | - Ran Li
- Center for Theoretical Interdisciplinary Sciences, Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou 325001, China
| | - Jin Wang
- Department of Chemistry, State University of New York, Stony Brook, NY 11794, USA
- Department of Physics and Astronomy, State University of New York, Stony Brook, NY 11794, USA
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9
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Ruiz-Pino N, Villarrubia-Moreno D, Prados A, Cao-García FJ. Information in feedback ratchets. Phys Rev E 2023; 108:034112. [PMID: 37849167 DOI: 10.1103/physreve.108.034112] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2023] [Accepted: 08/17/2023] [Indexed: 10/19/2023]
Abstract
Feedback control uses the state information of the system to actuate on it. The information used implies an effective entropy reduction of the controlled system, potentially increasing its performance. How to compute this entropy reduction has been formally shown for a general system and has been explicitly computed for spatially discrete systems. Here, we address a relevant example of how to compute the entropy reduction by information in a spatially continuous feedback-controlled system. Specifically, we consider a feedback flashing ratchet, which constitutes a paradigmatic example for the role of information and feedback in the dynamics and thermodynamics of transport induced by the rectification of Brownian motion. A Brownian particle moves in a periodic potential that is switched on and off by a controller. The controller measures the position of the particle at regular intervals and performs the switching depending on the result of the measurement. This system reaches a long-time dynamical regime with a nonzero mean particle velocity, even for a symmetric potential. Here, we calculate the efficiency at maximum power in this long-time regime, computing all the required contributions. We show how the entropy reduction can be evaluated from the entropy of the non-Markovian sequence of control actions, and we also discuss the required sampling effort for its accurate computation. Moreover, the output power developed by the particle against an external force is investigated, which-for some values of the system parameters-is shown to become larger than the input power provided by the switching of the potential. The apparent efficiency of the ratchet thus becomes higher than one, if the entropy reduction contribution is not considered. This result highlights the relevance of including the entropy reduction by information in the thermodynamic balance of feedback-controlled devices, specifically when writing the second principle. The inclusion of the entropy reduction by information leads to a well-behaved efficiency over all the range of parameters investigated.
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Affiliation(s)
- Natalia Ruiz-Pino
- Física Teórica, Apartado de Correos 1065, Universidad de Sevilla, E-41080 Sevilla, Spain
- Departamento Estructura de la Materia, Física Térmica y Electrónica, Universidad Complutense de Madrid, Plaza de Ciencias, 1, 28040 Madrid, Spain
| | - Daniel Villarrubia-Moreno
- Departamento Estructura de la Materia, Física Térmica y Electrónica, Universidad Complutense de Madrid, Plaza de Ciencias, 1, 28040 Madrid, Spain
- Departamento de Matemáticas & Grupo Interdisciplinar de Sistemas Complejos (GISC), Universidad Carlos III de Madrid, Avenida Universidad 30, 28911 Leganés, Spain
| | - Antonio Prados
- Física Teórica, Apartado de Correos 1065, Universidad de Sevilla, E-41080 Sevilla, Spain
| | - Francisco J Cao-García
- Departamento Estructura de la Materia, Física Térmica y Electrónica, Universidad Complutense de Madrid, Plaza de Ciencias, 1, 28040 Madrid, Spain
- Instituto Madrileño de Estudios Avanzados en Nanociencia, IMDEA Nanociencia, Calle Faraday, 9, 28049 Madrid, Spain
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10
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Flatt S, Busiello DM, Zamuner S, De Los Rios P. ABC transporters are billion-year-old Maxwell Demons. COMMUNICATIONS PHYSICS 2023; 6:205. [PMID: 38665399 PMCID: PMC11041718 DOI: 10.1038/s42005-023-01320-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/23/2022] [Accepted: 07/26/2023] [Indexed: 04/28/2024]
Abstract
ATP-Binding Cassette (ABC) transporters are a broad family of biological machines, found in most prokaryotic and eukaryotic cells, performing the crucial import or export of substrates through both plasma and organellar membranes, and maintaining a steady concentration gradient driven by ATP hydrolysis. Building upon the present biophysical and biochemical characterization of ABC transporters, we propose here a model whose solution reveals that these machines are an exact molecular realization of the autonomous Maxwell Demon, a century-old abstract device that uses an energy source to drive systems away from thermodynamic equilibrium. In particular, the Maxwell Demon does not perform any direct mechanical work on the system, but simply selects which spontaneous processes to allow and which ones to forbid based on information that it collects and processes. In its autonomous version, the measurement device is embedded in the system itself. In the molecular model introduced here, the different operations that characterize Maxwell Demons (measurement, feedback, resetting) are features that emerge from the biochemical and structural properties of ABC transporters, revealing the crucial role of allostery to process information. Our framework allows us to develop an explicit bridge between the molecular-level description and the higher-level language of information theory for ABC transporters.
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Affiliation(s)
- Solange Flatt
- Institute of Physics, School of Basic Sciences, École Polytechnique Fédérale de Lausanne—EPFL, Lausanne, 1015 Switzerland
| | - Daniel Maria Busiello
- Institute of Physics, School of Basic Sciences, École Polytechnique Fédérale de Lausanne—EPFL, Lausanne, 1015 Switzerland
- Max Planck Institute for the Physics of Complex Systems, Dresden, 01187 Germany
| | - Stefano Zamuner
- Institute of Physics, School of Basic Sciences, École Polytechnique Fédérale de Lausanne—EPFL, Lausanne, 1015 Switzerland
| | - Paolo De Los Rios
- Institute of Physics, School of Basic Sciences, École Polytechnique Fédérale de Lausanne—EPFL, Lausanne, 1015 Switzerland
- Institute of Bioengineering, School of Life Sciences, École Polytechnique Fédérale de Lausanne—EPFL, Lausanne, 1015 Switzerland
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11
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Semaan MT, Crutchfield JP. First and second laws of information processing by nonequilibrium dynamical states. Phys Rev E 2023; 107:054132. [PMID: 37329111 DOI: 10.1103/physreve.107.054132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2023] [Accepted: 05/04/2023] [Indexed: 06/18/2023]
Abstract
The averaged steady-state surprisal links a driven stochastic system's information processing to its nonequilibrium thermodynamic response. By explicitly accounting for the effects of nonequilibrium steady states, a decomposition of the surprisal results in an information processing first law that extends and tightens-to strict equalities-various information processing second laws. Applying stochastic thermodynamics' integral fluctuation theorems then shows that the decomposition reduces to the second laws under appropriate limits. In unifying them, the first law paves the way to identifying the mechanisms by which nonequilibrium steady-state systems leverage information-bearing degrees of freedom to extract heat. To illustrate, we analyze an autonomous Maxwellian information ratchet that tunably violates detailed balance in its effective dynamics. This demonstrates how the presence of nonequilibrium steady states qualitatively alters an information engine's allowed functionality.
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Affiliation(s)
- Mikhael T Semaan
- Complexity Sciences Center and Department of Physics and Astronomy, University of California, Davis, One Shields Avenue, Davis, California 95616, USA
- Science Research Initiative, College of Science, University of Utah, Salt Lake City, Utah 84112, USA
| | - James P Crutchfield
- Complexity Sciences Center and Department of Physics and Astronomy, University of California, Davis, One Shields Avenue, Davis, California 95616, USA
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12
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Loos SAM, Arabha S, Rajabpour A, Hassanali A, Roldán É. Nonreciprocal forces enable cold-to-hot heat transfer between nanoparticles. Sci Rep 2023; 13:4517. [PMID: 36934145 PMCID: PMC10024720 DOI: 10.1038/s41598-023-31583-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Accepted: 03/14/2023] [Indexed: 03/20/2023] Open
Abstract
We study the heat transfer between two nanoparticles held at different temperatures that interact through nonreciprocal forces, by combining molecular dynamics simulations with stochastic thermodynamics. Our simulations reveal that it is possible to construct nano refrigerators that generate a net heat transfer from a cold to a hot reservoir at the expense of power exerted by the nonreciprocal forces. Applying concepts from stochastic thermodynamics to a minimal underdamped Langevin model, we derive exact analytical expressions predictions for the fluctuations of work, heat, and efficiency, which reproduce thermodynamic quantities extracted from the molecular dynamics simulations. The theory only involves a single unknown parameter, namely an effective friction coefficient, which we estimate fitting the results of the molecular dynamics simulation to our theoretical predictions. Using this framework, we also establish design principles which identify the minimal amount of entropy production that is needed to achieve a certain amount of uncertainty in the power fluctuations of our nano refrigerator. Taken together, our results shed light on how the direction and fluctuations of heat flows in natural and artificial nano machines can be accurately quantified and controlled by using nonreciprocal forces.
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Affiliation(s)
- Sarah A M Loos
- Department of Applied Mathematics and Theoretical Physics, University of Cambridge, Wilberforce Road, Cambridge, CB3 0WA, UK.
- ICTP - International Centre for Theoretical Physics, Strada Costiera, 11, 34151, Trieste, Italy.
| | - Saeed Arabha
- Department of Mechanical Engineering, Lassonde School of Engineering, York University, Toronto, Canada
- Advanced Simulation and Computing Laboratory (ASCL), Imam Khomeini International University, Qazvin, Iran
| | - Ali Rajabpour
- Advanced Simulation and Computing Laboratory (ASCL), Imam Khomeini International University, Qazvin, Iran
- School of Nano Science, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran
| | - Ali Hassanali
- ICTP - International Centre for Theoretical Physics, Strada Costiera, 11, 34151, Trieste, Italy
| | - Édgar Roldán
- ICTP - International Centre for Theoretical Physics, Strada Costiera, 11, 34151, Trieste, Italy
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13
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He L, Cheong JW, Pradana A, Chew LY. Effects of correlation in an information ratchet with finite tape. Phys Rev E 2023; 107:024130. [PMID: 36932557 DOI: 10.1103/physreve.107.024130] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Accepted: 01/13/2023] [Indexed: 06/18/2023]
Abstract
With the finite-tape autonomous information ratchet modeled by He et al. [Phys. Rev. E 105, 054131 (2022)2470-004510.1103/PhysRevE.105.054131], we recast the information processing second law, giving a tighter bound on the work extracted, in terms of the marginal bit-ratchet distribution defined from the joint tape-ratchet distribution. The marginal distribution is further utilized to probe and elucidate the conditions that lead to the presence of equilibrium and nonequilibrium stationary states in general, which are related to the effects of correlation. Applying our analysis to two designs of this information ratchet, where correlations within manifest differently, we uncover the mathematical condition for equilibrium stationary states for information ratchets that harness correlation, to identify them for engine operation during the transient phase.
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Affiliation(s)
- Lianjie He
- Division of Physics and Applied Physics, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371
| | - Jian Wei Cheong
- Division of Physics and Applied Physics, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371
| | - Andri Pradana
- Division of Physics and Applied Physics, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371
| | - Lock Yue Chew
- Division of Physics and Applied Physics, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371
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14
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Cao Z, Bao R, Zheng J, Hou Z. Fast Functionalization with High Performance in the Autonomous Information Engine. J Phys Chem Lett 2023; 14:66-72. [PMID: 36566388 DOI: 10.1021/acs.jpclett.2c03335] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Mandal and Jarzynski have proposed a fully autonomous information heat engine, consisting of a demon, a mass, and a memory register interacting with a thermal reservoir. This device converts thermal energy into mechanical work by writing information to a memory register or, conversely, erasing information by consuming mechanical work. Here, we derive a speed limit inequality between the relaxation time of state transformation and the distance between the initial and final distributions, where the combination of the dynamical activity and entropy production plays an important role. Such inequality provides a hint that a speed-performance trade-off relation exists between the relaxation time to a functional state and the average production. To obtain fast functionalization while maintaining the performance, we show that the relaxation dynamics of the information heat engine can be accelerated significantly by devising an optimal initial state of the demon. Our design principle is inspired by the so-called Mpemba effect, where water freezes faster when initially heated.
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Affiliation(s)
- Zhiyu Cao
- Department of Chemical Physics and Hefei National Research Center for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei, Anhui230026, China
| | - Ruicheng Bao
- Department of Chemical Physics and Hefei National Research Center for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei, Anhui230026, China
| | - Jiming Zheng
- Department of Chemical Physics and Hefei National Research Center for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei, Anhui230026, China
| | - Zhonghuai Hou
- Department of Chemical Physics and Hefei National Research Center for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei, Anhui230026, China
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15
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Bhattacharyya D, Jarzynski C. From a feedback-controlled demon to an information ratchet in a double quantum dot. Phys Rev E 2022; 106:064101. [PMID: 36671120 DOI: 10.1103/physreve.106.064101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2022] [Accepted: 11/15/2022] [Indexed: 06/17/2023]
Abstract
We present a simple strategy for constructing an information ratchet or memory-tape model of Maxwell's demon, from a feedback-controlled model. We illustrate our approach by converting the Annby-Andersson feedback-controlled double quantum dot model [Phys. Rev. B 101, 165404 (2020)2469-995010.1103/PhysRevB.101.165404] to a memory-tape model. We use the underlying network structure of the original model to design a set of bit interaction rules for the information ratchet. The new model is solved analytically in the limit of long interaction times. For finite-time interactions, semianalytical phase diagrams of operational modes are obtained. Stochastic simulations are used to verify theoretical results.
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Affiliation(s)
- Debankur Bhattacharyya
- Institute for Physical Science and Technology, University of Maryland, College Park, Maryland 20742, USA
| | - Christopher Jarzynski
- Institute for Physical Science and Technology, Department of Chemistry and Biochemistry, and Department of Physics, University of Maryland, College Park, Maryland 20742, USA
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16
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Paneru G, Dutta S, Pak HK. Colossal Power Extraction from Active Cyclic Brownian Information Engines. J Phys Chem Lett 2022; 13:6912-6918. [PMID: 35866740 PMCID: PMC9358709 DOI: 10.1021/acs.jpclett.2c01736] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2022] [Accepted: 07/19/2022] [Indexed: 06/15/2023]
Abstract
Brownian information engines can extract work from thermal fluctuations by utilizing information. To date, the studies on Brownian information engines consider the system in a thermal bath; however, many processes in nature occur in a nonequilibrium setting, such as the suspensions of self-propelled microorganisms or cellular environments called an active bath. Here, we introduce an archetypal model for a Maxwell-demon type cyclic Brownian information engine operating in a Gaussian correlated active bath capable of extracting more work than its thermal counterpart. We obtain a general integral fluctuation theorem for the active engine that includes additional mutual information gained from the active bath with a unique effective temperature. This effective description modifies the generalized second law and provides a new upper bound for the extracted work. Unlike the passive information engine operating in a thermal bath, the active information engine extracts colossal power that peaks at the finite cycle period. Our study provides fundamental insights into the design and functioning of synthetic and biological submicrometer motors in active baths under measurement and feedback control.
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Affiliation(s)
- Govind Paneru
- Center
for Soft and Living Matter, Institute for
Basic Science (IBS), Ulsan 44919, Republic of Korea
- Department
of Physics, Ulsan National Institute of
Science and Technology, Ulsan 44919, Republic of Korea
| | - Sandipan Dutta
- Department
of Physics, Birla Institute of Technology
and Science, Pilani 333031, India
| | - Hyuk Kyu Pak
- Center
for Soft and Living Matter, Institute for
Basic Science (IBS), Ulsan 44919, Republic of Korea
- Department
of Physics, Ulsan National Institute of
Science and Technology, Ulsan 44919, Republic of Korea
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17
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Tian Y, Sun P. Information thermodynamics of encoding and encoders. CHAOS (WOODBURY, N.Y.) 2022; 32:063109. [PMID: 35778156 DOI: 10.1063/5.0068115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2021] [Accepted: 05/09/2022] [Indexed: 06/15/2023]
Abstract
Non-isolated systems have diverse coupling relations with the external environment. These relations generate complex thermodynamics and information transmission between the system and its environment. The framework depicted in the current research attempts to glance at the critical role of the internal orders inside the non-isolated system in shaping the information thermodynamics coupling. We characterize the coupling as a generalized encoding process, where the system acts as an information thermodynamics encoder to encode the external information based on thermodynamics. We formalize the encoding process in the context of the nonequilibrium second law of thermodynamics, revealing an intrinsic difference in information thermodynamics characteristics between information thermodynamics encoders with and without internal correlations. During the information encoding process of an external source Y, specific sub-systems in an encoder X with internal correlations can exceed the information thermodynamics bound on ( X , Y ) and encode more information than system X works as a whole. We computationally verify this theoretical finding in an Ising model with a random external field and a neural data set of the human brain during visual perception and recognition. Our analysis demonstrates that the stronger internal correlation inside these systems implies a higher possibility for specific sub-systems to encode more information than the global one. These findings may suggest a new perspective in studying information thermodynamics in diverse physical and biological systems.
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Affiliation(s)
- Yang Tian
- Department of Psychology, Tsinghua Laboratory of Brain and Intelligence, Tsinghua University, Beijing 100084, China
| | - Pei Sun
- Department of Psychology, Tsinghua Laboratory of Brain and Intelligence, Tsinghua University, Beijing 100084, China
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18
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He L, Pradana A, Cheong JW, Chew LY. Information processing second law for an information ratchet with finite tape. Phys Rev E 2022; 105:054131. [PMID: 35706159 DOI: 10.1103/physreve.105.054131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2022] [Accepted: 05/03/2022] [Indexed: 06/15/2023]
Abstract
We model a class of discrete-time information ratchet with a finite tape and explore its thermodynamic consequence as a Maxwell demon. We found that, although it supports the operational regime of an engine or eraser, it cannot typically sustain these thermodynamic functionalities due to eventual equilibration as a result of the finite information capacity of the tape. Nonetheless, cumulative work can be accrued or expended through successive tape scans and we prove that at all time the ratchet obeys the information processing second law (IPSL). Unlike the IPSL for the infinite-tape ratchet which operates only at the stationary state, the IPSL here is applicable also at the transient phase of the ratchet operation. We explore two ratchet designs with the single-state perturbed coin (PC) ratchet being the simplest ratchet without memory, while the double-state modified Boyd's (MB) ratchet is the simplest ratchet with memory. Our analysis shows that the MB ratchet can harness correlation to accumulate more work by having a larger time constant to reach steady state relative to the PC ratchet.
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Affiliation(s)
- Lianjie He
- Division of Physics and Applied Physics, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore
| | - Andri Pradana
- Division of Physics and Applied Physics, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore
| | - Jian Wei Cheong
- Division of Physics and Applied Physics, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore
| | - Lock Yue Chew
- Division of Physics and Applied Physics, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore
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19
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Poulsen K, Majland M, Lloyd S, Kjaergaard M, Zinner NT. Quantum Maxwell's demon assisted by non-Markovian effects. Phys Rev E 2022; 105:044141. [PMID: 35590580 DOI: 10.1103/physreve.105.044141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2021] [Accepted: 03/22/2022] [Indexed: 06/15/2023]
Abstract
Maxwell's demon is the quintessential example of information control, which is necessary for designing quantum devices. In thermodynamics, the demon is an intelligent being who utilizes the entropic nature of information to sort excitations between reservoirs, thus lowering the total entropy. So far, implementations of Maxwell's demon have largely been limited to Markovian baths. In our work, we study the degree to which such a demon may be assisted by non-Markovian effects using a superconducting circuit platform. The setup is two baths connected by a demon-controlled qutrit interface, allowing the transfer of excitations only if the overall entropy of the two baths is lowered. The largest entropy reduction is achieved in a non-Markovian regime and, importantly, due to non-Markovian effects, the demon performance can be optimized through proper timing. Our results demonstrate that non-Markovian effects can be exploited to boost the information transfer rate in quantum Maxwell demons.
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Affiliation(s)
- Kasper Poulsen
- Department of Physics and Astronomy, Aarhus University, Ny munkegade 120, 8000 Aarhus C, Denmark
| | - Marco Majland
- Department of Physics and Astronomy, Aarhus University, Ny munkegade 120, 8000 Aarhus C, Denmark
| | - Seth Lloyd
- Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - Morten Kjaergaard
- Center for Quantum Devices, Niels Bohr Institute, University of Copenhagen, 2100 Copenhagen, Denmark
| | - Nikolaj T Zinner
- Department of Physics and Astronomy, Aarhus University, Ny munkegade 120, 8000 Aarhus C, Denmark
- Aarhus Institute of Advanced Studies, Aarhus University, Høegh-Guldbergs Gade 6B, 8000 Aarhus C, Denmark
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20
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Barker D, Scandi M, Lehmann S, Thelander C, Dick KA, Perarnau-Llobet M, Maisi VF. Experimental Verification of the Work Fluctuation-Dissipation Relation for Information-to-Work Conversion. PHYSICAL REVIEW LETTERS 2022; 128:040602. [PMID: 35148140 DOI: 10.1103/physrevlett.128.040602] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2021] [Revised: 11/23/2021] [Accepted: 12/22/2021] [Indexed: 06/14/2023]
Abstract
We study experimentally work fluctuations in a Szilard engine that extracts work from information encoded as the occupancy of an electron level in a semiconductor quantum dot. We show that as the average work extracted per bit of information increases toward the Landauer limit k_{B}Tln2, the work fluctuations decrease in accordance with the work fluctuation-dissipation relation. We compare the results to a protocol without measurement and feedback and show that when no information is used, the work output and fluctuations vanish simultaneously, contrasting the information-to-energy conversion case where increasing amount of work is produced with decreasing fluctuations. Our study highlights the importance of fluctuations in the design of information-to-work conversion processes.
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Affiliation(s)
- David Barker
- NanoLund and Solid State Physics, Lund University, Box 118, 22100 Lund, Sweden
| | - Matteo Scandi
- ICFO-Institut de Ciencies Fotoniques, The Barcelona Institute of Science and Technology, Castelldefels (Barcelona) 08860, Spain
| | - Sebastian Lehmann
- NanoLund and Solid State Physics, Lund University, Box 118, 22100 Lund, Sweden
| | - Claes Thelander
- NanoLund and Solid State Physics, Lund University, Box 118, 22100 Lund, Sweden
| | - Kimberly A Dick
- NanoLund and Solid State Physics, Lund University, Box 118, 22100 Lund, Sweden
- Centre for Analysis and Synthesis, Lund University, Box 124, 22100 Lund, Sweden
| | | | - Ville F Maisi
- NanoLund and Solid State Physics, Lund University, Box 118, 22100 Lund, Sweden
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21
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Qiao Y, Shang Z, Kou R. Molecular-sized outward-swinging gate: Experiment and theoretical analysis of a locally nonchaotic barrier. Phys Rev E 2022; 104:064133. [PMID: 35030897 DOI: 10.1103/physreve.104.064133] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2021] [Accepted: 12/03/2021] [Indexed: 11/07/2022]
Abstract
We investigate the concept of molecular-sized outward-swinging gate, which allows for entropy decrease in an isolated system. The theoretical analysis, the Monte Carlo simulation, and the direct solution of governing equations all suggest that under the condition of local nonchaoticity, the probability of particle crossing is asymmetric. It is demonstrated by an experiment on a nanoporous membrane one-sidedly surface-grafted with bendable organic chains. Remarkably, through the membrane, gas spontaneously and repeatedly flows from the low-pressure side to the high-pressure side. While this phenomenon seems counterintuitive, it is compatible with the principle of maximum entropy. The locally nonchaotic gate interrupts the probability distribution of the local microstates, and imposes additional constraints on the global microstates, so that entropy reaches a nonequilibrium maximum. Such a mechanism is fundamentally different from Maxwell's demon and Feynman's ratchet, and is consistent with microscopic reversibility. It implies that useful work may be produced in a cycle from a single thermal reservoir. A generalized form of the second law of thermodynamics is proposed.
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Affiliation(s)
- Yu Qiao
- Program of Materials Science and Engineering, University of California - San Diego, La Jolla, California 92093, USA.,Department of Structural Engineering, University of California - San Diego, La Jolla, California 92093-0085, USA
| | - Zhaoru Shang
- Program of Materials Science and Engineering, University of California - San Diego, La Jolla, California 92093, USA
| | - Rui Kou
- Department of Structural Engineering, University of California - San Diego, La Jolla, California 92093-0085, USA
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22
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Garner AJP. The fundamental thermodynamic bounds on finite models. CHAOS (WOODBURY, N.Y.) 2021; 31:063131. [PMID: 34241324 DOI: 10.1063/5.0044741] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2021] [Accepted: 06/01/2021] [Indexed: 06/13/2023]
Abstract
The minimum heat cost of computation is subject to bounds arising from Landauer's principle. Here, I derive bounds on finite modeling-the production or anticipation of patterns (time-series data)-by devices that model the pattern in a piecewise manner and are equipped with a finite amount of memory. When producing a pattern, I show that the minimum dissipation is proportional to the information in the model's memory about the pattern's history that never manifests in the device's future behavior and must be expunged from memory. I provide a general construction of a model that allows this dissipation to be reduced to zero. By also considering devices that consume or effect arbitrary changes on a pattern, I discuss how these finite models can form an information reservoir framework consistent with the second law of thermodynamics.
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Affiliation(s)
- Andrew J P Garner
- School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, 637371 Singapore, Singapore and Institute for Quantum Optics and Quantum Information, Austrian Academy of Sciences, Boltzmanngasse 3, A-1090 Vienna, Austria
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23
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Zeng Q, Wang J. New fluctuation theorems on Maxwell's demon. SCIENCE ADVANCES 2021; 7:7/23/eabf1807. [PMID: 34088664 PMCID: PMC8177699 DOI: 10.1126/sciadv.abf1807] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/09/2020] [Accepted: 04/20/2021] [Indexed: 06/12/2023]
Abstract
With increasing interest in the control of systems at the nano- and mesoscopic scales, studies have been focused on the limit of the energy dissipation in an open system by refining the concept of the Maxwell's demon. To uncover the underlying physical principle behind a system controlled by a demon, we prove a previously unexplored set of fluctuation theorems. These fluctuation theorems imply that there exists an intrinsic nonequilibrium state of the system, led by the nonnegative demon-induced dissipative information. A consequence of this analysis is that the bounds of both work and heat are tighter than the limits predicted by the Sagawa-Ueda theorem. We also suggest a possible experimental test of these work and heat bounds.
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Affiliation(s)
- Qian Zeng
- State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry, Changchun, Jilin 130022, China
| | - Jin Wang
- Departments of Chemistry and of Physics and Astronomy, State University of New York, Stony Brook, NY 11794-3400, USA.
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24
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Song J, Still S, Díaz Hernández Rojas R, Pérez Castillo I, Marsili M. Optimal work extraction and mutual information in a generalized Szilárd engine. Phys Rev E 2021; 103:052121. [PMID: 34134259 DOI: 10.1103/physreve.103.052121] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2019] [Accepted: 04/08/2021] [Indexed: 11/07/2022]
Abstract
A 1929 Gedankenexperiment proposed by Szilárd, often referred to as "Szilárd's engine", has served as a foundation for computing fundamental thermodynamic bounds to information processing. While Szilárd's original box could be partitioned into two halves and contains one gas molecule, we calculate here the maximal average work that can be extracted in a system with N particles and q partitions, given an observer which counts the molecules in each partition, and given a work extraction mechanism that is limited to pressure equalization. We find that the average extracted work is proportional to the mutual information between the one-particle position and the vector containing the counts of how many particles are in each partition. We optimize this quantity over the initial locations of the dividing walls, and find that there exists a critical number of particles N^{★}(q) below which the extracted work is maximized by a symmetric configuration of the q partitions, and above which the optimal partitioning is asymmetric. Overall, the average extracted work is maximized for a number of particles N[over ̂](q)<N^{★}(q), with a symmetric partition. We calculate asymptotic values for N→∞.
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Affiliation(s)
- Juyong Song
- Samsung Research, Samsung Electronics Co., Ltd., Seoul, 06765, Korea
| | - Susanne Still
- Department of Information and Computer Sciences, and Department of Physics and Astronomy, University of Hawai'i at Mānoa, Honolulu, Hawaii 96822, USA
| | | | - Isaac Pérez Castillo
- Departamento de Física, Universidad Autónoma Metropolitana-Iztapalapa, San Rafael Atlixco 186, Ciudad de México 09340, Mexico
| | - Matteo Marsili
- The Abdus Salam International Centre for Theoretical Physics (ICTP), Trieste 34151, Italy
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25
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Abstract
Information-driven engines that rectify thermal fluctuations are a modern realization of the Maxwell-demon thought experiment. We introduce a simple design based on a heavy colloidal particle, held by an optical trap and immersed in water. Using a carefully designed feedback loop, our experimental realization of an "information ratchet" takes advantage of favorable "up" fluctuations to lift a weight against gravity, storing potential energy without doing external work. By optimizing the ratchet design for performance via a simple theory, we find that the rate of work storage and velocity of directed motion are limited only by the physical parameters of the engine: the size of the particle, stiffness of the ratchet spring, friction produced by the motion, and temperature of the surrounding medium. Notably, because performance saturates with increasing frequency of observations, the measurement process is not a limiting factor. The extracted power and velocity are at least an order of magnitude higher than in previously reported engines.
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26
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Joseph T, V K. Efficiency estimation for an equilibrium version of the Maxwell refrigerator. Phys Rev E 2021; 103:022131. [PMID: 33735980 DOI: 10.1103/physreve.103.022131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Accepted: 01/27/2021] [Indexed: 11/07/2022]
Abstract
Maxwell refrigerator as a device that can transfer heat from a cold to hot temperature reservoir making use of information reservoir was introduced by Mandal et al. [Phys. Rev. Lett. 111, 030602 (2013)PRLTAO0031-900710.1103/PhysRevLett.111.030602]. The model has a two-state demon and a bit stream interacting with two thermal reservoirs simultaneously. We work out a simpler version of the refrigerator where the demon and bit system interact with the reservoirs separately and for a duration long enough to establish equilibrium. The efficiency, η, of the device when working as an engine as well as the coefficient of performance (COP) when working as a refrigerator are calculated. It is shown that the maximum efficiency matches that of a Carnot engine/refrigerator working between the same temperatures, as expected. The COP, when cooling per cycle is a maximum, decreases as 1/T_{h} when T_{h}>T_{c}≫ΔE (k_{B}=1), where T_{h} and T_{c} are the temperatures of the hot and cold reservoirs, respectively, and ΔE is the level spacing of the demon. η, when work per cycle is a maximum, is found to be T_{h}/0.779+T_{h} when T_{c}≪ΔE and T_{h}≫ΔE.
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Affiliation(s)
- Toby Joseph
- Department of Physics, BITS Pilani K K Birla Goa Campus, Zuarinagar 403726, Goa, India
| | - Kiran V
- Department of Physics, BITS Pilani K K Birla Goa Campus, Zuarinagar 403726, Goa, India
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27
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Semikolenov AV. Maxwell's quasi-demon as a property of an ideal gas in the equilibrium state. Proc Math Phys Eng Sci 2020. [DOI: 10.1098/rspa.2020.0232] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
The paper shows that for the case of an ideal gas in the equilibrium state there exists a method for splitting it into portions with different temperatures without energy transfer to or from the environment and without work being done. Compared with the thought experiment known as ‘Maxwell's demon’, in which such splitting is based on sorting specific molecules according to their energy levels, the process described does not require the energy of a specific molecule to be determined. Here the splitting is guided by the average energy of a group of molecules. The paper establishes the fact that the average energy of molecules striking the wall over a period of time is higher than the average energy of all molecules constituting the gas; this fact is what substantiates our method. This explains how a process that may result in extracting a higher temperature portion of the gas in the equilibrium state is generally possible. The paper considers one of the implementations of this process. We also show that groups of molecules may be split off from the gas, the average energy of said groups being lower than the average energy of the gas molecules in total.
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Affiliation(s)
- Andrey V. Semikolenov
- Department of Physics, Bauman Moscow State Technical University, ul. Baumanskaya 2-ya, 5/1, Moscow 105005, Russia
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28
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Rupprecht N, Vural DC. Predictive Maxwell's demons. Phys Rev E 2020; 102:062145. [PMID: 33465975 DOI: 10.1103/physreve.102.062145] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2020] [Accepted: 12/07/2020] [Indexed: 11/07/2022]
Abstract
Here we study the operation efficiency of a finite-size finite-response-time Maxwell's demon, who can make future predictions. We compare the heat and mass transport rate of predictive demons to nonpredictive ones and find that predictive demons can achieve higher mass and heat transport rates over longer periods of time. We determine how the demon performance varies with response time, future sight, and the density of the gasses on which they operate.
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29
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Wolpert DH. Uncertainty Relations and Fluctuation Theorems for Bayes Nets. PHYSICAL REVIEW LETTERS 2020; 125:200602. [PMID: 33258647 DOI: 10.1103/physrevlett.125.200602] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2020] [Revised: 06/30/2020] [Accepted: 09/11/2020] [Indexed: 05/10/2023]
Abstract
Recent research has considered the stochastic thermodynamics of multiple interacting systems, representing the overall system as a Bayes net. I derive fluctuation theorems governing the entropy production (EP) of arbitrary sets of the systems in such a Bayes net. I also derive "conditional" fluctuation theorems, governing the distribution of EP in one set of systems conditioned on the EP of a different set of systems. I then derive thermodynamic uncertainty relations relating the EP of the overall system to the precisions of probability currents within the individual systems.
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Affiliation(s)
- David H Wolpert
- Santa Fe Institute, Santa Fe, New Mexico Complexity Science Hub, Vienna Arizona State University, Tempe, Arizona 87501, USA
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30
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Dann R, Kosloff R, Salamon P. Quantum Finite-Time Thermodynamics: Insight from a Single Qubit Engine. ENTROPY (BASEL, SWITZERLAND) 2020; 22:E1255. [PMID: 33287023 PMCID: PMC7712823 DOI: 10.3390/e22111255] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/06/2020] [Revised: 10/29/2020] [Accepted: 11/01/2020] [Indexed: 02/01/2023]
Abstract
Incorporating time into thermodynamics allows for addressing the tradeoff between efficiency and power. A qubit engine serves as a toy model in order to study this tradeoff from first principles, based on the quantum theory of open systems. We study the quantum origin of irreversibility, originating from heat transport, quantum friction, and thermalization in the presence of external driving. We construct various finite-time engine cycles that are based on the Otto and Carnot templates. Our analysis highlights the role of coherence and the quantum origin of entropy production.
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Affiliation(s)
- Roie Dann
- The Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel;
| | - Ronnie Kosloff
- The Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel;
| | - Peter Salamon
- Department of Mathematics and Statistics, San Diego State University, 5500 Campanile Drive, San Diego, CA 92182-7720, USA;
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31
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Seah S, Nimmrichter S, Scarani V. Maxwell's Lesser Demon: A Quantum Engine Driven by Pointer Measurements. PHYSICAL REVIEW LETTERS 2020; 124:100603. [PMID: 32216402 DOI: 10.1103/physrevlett.124.100603] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2019] [Accepted: 02/21/2020] [Indexed: 06/10/2023]
Abstract
We discuss a self-contained spin-boson model for a measurement-driven engine, in which a demon generates work from thermal excitations of a quantum spin via measurement and feedback control. Instead of granting it full direct access to the spin state and to Landauer's erasure strokes for optimal performance, we restrict this demon's action to pointer measurements, i.e., random or continuous interrogations of a damped mechanical oscillator that assumes macroscopically distinct positions depending on the spin state. The engine can reach simultaneously the power and efficiency benchmarks and operate in temperature regimes where quantum Otto engines would fail.
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Affiliation(s)
- Stella Seah
- Department of Physics, National University of Singapore, 2 Science Drive 3, Singapore 117542, Singapore
| | - Stefan Nimmrichter
- Max Planck Institute for the Science of Light, Staudtstraße 2, 91058 Erlangen, Germany
| | - Valerio Scarani
- Department of Physics, National University of Singapore, 2 Science Drive 3, Singapore 117542, Singapore
- Centre for Quantum Technologies, National University of Singapore, 3 Science Drive 2, Singapore 117543, Singapore
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32
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Still S. Thermodynamic Cost and Benefit of Memory. PHYSICAL REVIEW LETTERS 2020; 124:050601. [PMID: 32083919 DOI: 10.1103/physrevlett.124.050601] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2019] [Accepted: 10/02/2019] [Indexed: 06/10/2023]
Abstract
This Letter exposes a tight connection between the thermodynamic efficiency of information processing and predictive inference. A generalized lower bound on dissipation is derived for partially observable information engines which are allowed to use temperature differences. It is shown that the retention of irrelevant information limits efficiency. A data representation method is derived from optimizing a fundamental physical limit to information processing: minimizing the lower bound on dissipation leads to a compression method that maximally retains relevant, predictive, information. In that sense, predictive inference emerges as the strategy that least precludes energy efficiency.
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Affiliation(s)
- Susanne Still
- Department of Information and Computer Sciences, and Department of Physics and Astronomy, University of Hawaii at Mānoa, 1680 East-West Road, Honolulu Hawaii, USA
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33
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Prediction and Dissipation in Nonequilibrium Molecular Sensors: Conditionally Markovian Channels Driven by Memoryful Environments. Bull Math Biol 2020; 82:25. [PMID: 31993762 DOI: 10.1007/s11538-020-00694-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2018] [Accepted: 12/31/2019] [Indexed: 10/25/2022]
Abstract
Biological sensors must often predict their input while operating under metabolic constraints. However, determining whether or not a particular sensor is evolved or designed to be accurate and efficient is challenging. This arises partly from the functional constraints being at cross purposes and partly since quantifying the prediction performance of even in silico sensors can require prohibitively long simulations, especially when highly complex environments drive sensors out of equilibrium. To circumvent these difficulties, we develop new expressions for the prediction accuracy and thermodynamic costs of the broad class of conditionally Markovian sensors subject to complex, correlated (unifilar hidden semi-Markov) environmental inputs in nonequilibrium steady state. Predictive metrics include the instantaneous memory and the total predictable information (the mutual information between present sensor state and input future), while dissipation metrics include power extracted from the environment and the nonpredictive information rate. Success in deriving these formulae relies on identifying the environment's causal states, the input's minimal sufficient statistics for prediction. Using these formulae, we study large random channels and the simplest nontrivial biological sensor model-that of a Hill molecule, characterized by the number of ligands that bind simultaneously-the sensor's cooperativity. We find that the seemingly impoverished Hill molecule can capture an order of magnitude more predictable information than large random channels.
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34
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Bartlett SJ, Beckett P. Probing complexity: thermodynamics and computational mechanics approaches to origins studies. Interface Focus 2019; 9:20190058. [PMID: 31641432 DOI: 10.1098/rsfs.2019.0058] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/06/2019] [Indexed: 12/15/2022] Open
Abstract
This paper proposes new avenues for origins research that apply modern concepts from stochastic thermodynamics, information thermodynamics and complexity science. Most approaches to the emergence of life prioritize certain compounds, reaction pathways, environments or phenomena. What they all have in common is the objective of reaching a state that is recognizably alive, usually positing the need for an evolutionary process. As with life itself, this correlates with a growth in the complexity of the system over time. Complexity often takes the form of an intuition or a proxy for a phenomenon that defies complete understanding. However, recent progress in several theoretical fields allows the rigorous computation of complexity. We thus propose that measurement and control of the complexity and information content of origins-relevant systems can provide novel insights that are absent in other approaches. Since we have no guarantee that the earliest forms of life (or alien life) used the same materials and processes as extant life, an appeal to complexity and information processing provides a more objective and agnostic approach to the search for life's beginnings. This paper gives an accessible overview of the three relevant branches of modern thermodynamics. These frameworks are not commonly applied in origins studies, but are ideally suited to the analysis of such non-equilibrium systems. We present proposals for the application of these concepts in both theoretical and experimental origins settings.
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Affiliation(s)
- Stuart J Bartlett
- Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, USA.,Earth-Life Science Institute, Tokyo Institute of Technology, Tokyo, Japan
| | - Patrick Beckett
- Department of Chemical Engineering, University of California Davis, Davis, CA, USA.,Department of Civil and Environmental Engineering, University of California Davis, Davis, CA, USA
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35
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Rupprecht N, Vural DC. Maxwell's Demons with Finite Size and Response Time. PHYSICAL REVIEW LETTERS 2019; 123:080603. [PMID: 31491195 DOI: 10.1103/physrevlett.123.080603] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2019] [Revised: 06/17/2019] [Indexed: 06/10/2023]
Abstract
Nearly all theoretical analyses of Maxwell's demon focus on its energetic and entropic costs of operation. Here, we focus on its rate of operation. In our model, a demon's rate limitation stems from its finite response time and gate area. We determine the rate limits of mass and energy transfer, as well as entropic reduction for four such demons: those that select particles according to (1) direction, (2) energy, (3) number, and (4) entropy. Last, we determine the optimal gate size for a demon with small, finite response time, and compare our predictions with molecular dynamics simulations with both ideal and nonideal gasses. Also, we study the conditions under which the demons are able to move both energy and particles in the chosen direction when attempting to only move one.
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Affiliation(s)
- Nathaniel Rupprecht
- Department of Physics, University of Notre Dame, Notre Dame, Indiana 46556, USA
| | - Dervis Can Vural
- Department of Physics, University of Notre Dame, Notre Dame, Indiana 46556, USA
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36
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Strasberg P, Winter A. Stochastic thermodynamics with arbitrary interventions. Phys Rev E 2019; 100:022135. [PMID: 31574732 DOI: 10.1103/physreve.100.022135] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2019] [Indexed: 06/10/2023]
Abstract
We extend the theory of stochastic thermodynamics in three directions: (i) instead of a continuously monitored system we consider measurements only at an arbitrary set of discrete times, (ii) we allow for imperfect measurements and incomplete information in the description, and (iii) we treat arbitrary manipulations (e.g., feedback control operations) which are allowed to depend on the entire measurement record. For this purpose we define for a driven system in contact with a single heat bath the four key thermodynamic quantities-internal energy, heat, work, and entropy-along a single "trajectory" for a causal model. The first law at the trajectory level and the second law on average is verified. We highlight the special case of Bayesian or "bare" measurements (incomplete information, but no average disturbance) which allows us to compare our theory with the literature and to derive a general inequality for the estimated free energy difference in Jarzynski-type experiments. An analysis of a recent Maxwell demon experiment using real-time feedback control is also given. As a mathematical tool, we prove a classical version of Stinespring's dilation theorem, which might be of independent interest.
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Affiliation(s)
- Philipp Strasberg
- Física Teòrica: Informació i Fenòmens Quàntics, Departament de Física, Universitat Autònoma de Barcelona, 08193 Bellaterra (Barcelona), Spain
| | - Andreas Winter
- Física Teòrica: Informació i Fenòmens Quàntics, Departament de Física, Universitat Autònoma de Barcelona, 08193 Bellaterra (Barcelona), Spain
- ICREA - Institució Catalana de Recerca i Estudis Avançats, Passeig Lluis Companys 23, 08010 Barcelona, Spain
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37
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Holeček M. Work as a memory record. Phys Rev E 2019; 99:062130. [PMID: 31330670 DOI: 10.1103/physreve.99.062130] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2018] [Indexed: 11/07/2022]
Abstract
The possibility of a controlled manipulation with molecules at the nanoscale allows us to gain net work from thermal energy, although this seems to be in contradiction to the second law of thermodynamics. Any manipulation, however, causes some memory records somewhere in the system's surroundings. To complete the thermodynamic cycle, these records must be reset, which costs energy that cancels the previous gain. An important memory record may also be the final state of the work reservoir. This memory record is not reset. Nevertheless, it is rewritten and the associated memory erased whenever the state of the work reservoir is changed during the cycle repeating. The question is, what is the cost of this memory erasure. To answer it, we study a hypothetical cycle in which all memory records are reset except the state of the work reservoir alone, and the ensemble average of the work extracted from an equilibrium heat reservoir during this cycle, 〈W〉, is positive. It is shown that a strong information coupling of the system and the work reservoir then influences the system's dynamics so much that the cycle repeat may exhibit quite different behavior. Especially, it can run reversely and decrease energy in the work reservoir. It implies that even if the memory erasure is a natural part of the process, it costs energy in accord with information thermodynamics. At the nanoscale, this energy cost may manifest as a process obeying the fluctuation theorem.
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Affiliation(s)
- Miroslav Holeček
- New Technologies Research Center, University of West Bohemia, Plzeň 301 00, Czech Republic
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38
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Stevens J, Deffner S. Quantum to classical transition in an information ratchet. Phys Rev E 2019; 99:042129. [PMID: 31108656 DOI: 10.1103/physreve.99.042129] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2018] [Indexed: 11/07/2022]
Abstract
Recent years have seen a flurry of research activity in the study of minimal and autonomous information ratchets. However, the existing classical and quantum models are somewhat hard to compare and hence quantifying possible quantum supremacy in information ratchets has been elusive. We propose a step towards filling this void between quantum and classical ratchets by introducing a model with continuous variables: a quantum particle in a box coupled to a stream of qubits. The dynamics is solved exactly and we analyze the quantum to classical transition in terms of a natural timescale parameter for the model.
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Affiliation(s)
- Josey Stevens
- Department of Physics, University of Maryland, Baltimore County, Baltimore, Maryland 21250, USA.,Applied Physics Laboratory, Johns Hopkins University, Laurel, Maryland 20723, USA
| | - Sebastian Deffner
- Department of Physics, University of Maryland, Baltimore County, Baltimore, Maryland 21250, USA
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39
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Stopnitzky E, Still S, Ouldridge TE, Altenberg L. Physical limitations of work extraction from temporal correlations. Phys Rev E 2019; 99:042115. [PMID: 31108699 DOI: 10.1103/physreve.99.042115] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2018] [Indexed: 11/07/2022]
Abstract
Recently proposed information-exploiting systems extract work from a single heat bath by using temporal correlations on an input tape. We study how enforcing time-continuous dynamics, which is necessary to ensure that the device is physically realizable, constrains possible designs and drastically diminishes efficiency. We show that these problems can be circumvented by means of applying an external, time-varying protocol, which turns the device from a "passive," free-running machine into an "actively" driven one.
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Affiliation(s)
- Elan Stopnitzky
- Department of Physics and Astronomy, University of Hawaii at Manoa, Honolulu, Hawaii 96822, USA
| | - Susanne Still
- Department of Physics and Astronomy, University of Hawaii at Manoa, Honolulu, Hawaii 96822, USA.,Department of Information and Computer Sciences, University of Hawaii at Manoa, Honolulu, Hawaii 96822, USA
| | - Thomas E Ouldridge
- Department of Bioengineering and Imperial College Centre for Synthetic Biology, Imperial College London, London, SW7 2AZ, United Kingdom
| | - Lee Altenberg
- Department of Information and Computer Sciences, University of Hawaii at Manoa, Honolulu, Hawaii 96822, USA
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40
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Ptaszyński K, Esposito M. Thermodynamics of Quantum Information Flows. PHYSICAL REVIEW LETTERS 2019; 122:150603. [PMID: 31050547 DOI: 10.1103/physrevlett.122.150603] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2019] [Revised: 03/04/2019] [Indexed: 06/09/2023]
Abstract
We report two results complementing the second law of thermodynamics for Markovian open quantum systems coupled to multiple reservoirs with different temperatures and chemical potentials. First, we derive a nonequilibrium free energy inequality providing an upper bound for a maximum power output, which for systems with inhomogeneous temperature is not equivalent to the Clausius inequality. Second, we derive local Clausius and free energy inequalities for subsystems of a composite system. These inequalities differ from the total system one by the presence of an information-related contribution and build the ground for thermodynamics of quantum information processing. Our theory is used to study an autonomous Maxwell demon.
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Affiliation(s)
- Krzysztof Ptaszyński
- Institute of Molecular Physics, Polish Academy of Sciences, Mariana Smoluchowskiego 17, 60-179 Poznań, Poland
| | - Massimiliano Esposito
- Complex Systems and Statistical Mechanics, Physics and Materials Science Research Unit, University of Luxembourg, L-1511 Luxembourg, Luxembourg
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41
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Quantum Information Remote Carnot Engines and Voltage Transformers. ENTROPY 2019; 21:e21020127. [PMID: 33266843 PMCID: PMC7514606 DOI: 10.3390/e21020127] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/03/2019] [Revised: 01/24/2019] [Accepted: 01/28/2019] [Indexed: 11/17/2022]
Abstract
A physical system out of thermal equilibrium is a resource for obtaining useful work when a heat bath at some temperature is available. Information Heat Engines are the devices which generalize the Szilard cylinders and make use of the celebrated Maxwell demons to this end. In this paper, we consider a thermo-chemical reservoir of electrons which can be exchanged for entropy and work. Qubits are used as messengers between electron reservoirs to implement long-range voltage transformers with neither electrical nor magnetic interactions between the primary and secondary circuits. When they are at different temperatures, the transformers work according to Carnot cycles. A generalization is carried out to consider an electrical network where quantum techniques can furnish additional security.
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42
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A Programmable Mechanical Maxwell's Demon. ENTROPY 2019; 21:e21010065. [PMID: 33266781 PMCID: PMC7514173 DOI: 10.3390/e21010065] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/21/2018] [Revised: 12/22/2018] [Accepted: 01/09/2019] [Indexed: 12/04/2022]
Abstract
We introduce and investigate a simple and explicitly mechanical model of Maxwell’s demon—a device that interacts with a memory register (a stream of bits), a thermal reservoir (an ideal gas) and a work reservoir (a mass that can be lifted or lowered). Our device is similar to one that we have briefly described elsewhere, but it has the additional feature that it can be programmed to recognize a chosen reference sequence, for instance, the binary representation of π. If the bits in the memory register match those of the reference sequence, then the device extracts heat from the thermal reservoir and converts it into work to lift a small mass. Conversely, the device can operate as a generalized Landauer’s eraser (or copier), harnessing the energy of a dropping mass to write the chosen reference sequence onto the memory register, replacing whatever information may previously have been stored there. Our model can be interpreted either as a machine that autonomously performs a conversion between information and energy, or else as a feedback-controlled device that is operated by an external agent. We derive generalized second laws of thermodynamics for both pictures. We illustrate our model with numerical simulations, as well as analytical calculations in a particular, exactly solvable limit.
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43
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Kolchinsky A, Wolpert DH. Semantic information, autonomous agency and non-equilibrium statistical physics. Interface Focus 2018; 8:20180041. [PMID: 30443338 PMCID: PMC6227811 DOI: 10.1098/rsfs.2018.0041] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/04/2018] [Indexed: 01/24/2023] Open
Abstract
Shannon information theory provides various measures of so-called syntactic information, which reflect the amount of statistical correlation between systems. By contrast, the concept of 'semantic information' refers to those correlations which carry significance or 'meaning' for a given system. Semantic information plays an important role in many fields, including biology, cognitive science and philosophy, and there has been a long-standing interest in formulating a broadly applicable and formal theory of semantic information. In this paper, we introduce such a theory. We define semantic information as the syntactic information that a physical system has about its environment which is causally necessary for the system to maintain its own existence. 'Causal necessity' is defined in terms of counter-factual interventions which scramble correlations between the system and its environment, while 'maintaining existence' is defined in terms of the system's ability to keep itself in a low entropy state. We also use recent results in non-equilibrium statistical physics to analyse semantic information from a thermodynamic point of view. Our framework is grounded in the intrinsic dynamics of a system coupled to an environment, and is applicable to any physical system, living or otherwise. It leads to formal definitions of several concepts that have been intuitively understood to be related to semantic information, including 'value of information', 'semantic content' and 'agency'.
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Affiliation(s)
| | - David H. Wolpert
- Santa Fe Institute, Santa Fe, NM 87501, USA
- Massachusetts Institute of Technology, Cambridge, MA, USA
- Arizona State University, Tempe, AZ, USA
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44
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Spinney RE, Prokopenko M, Chu D. Information ratchets exploiting spatially structured information reservoirs. Phys Rev E 2018; 98:022124. [PMID: 30253523 DOI: 10.1103/physreve.98.022124] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2017] [Indexed: 11/07/2022]
Abstract
Fully mechanized Maxwell's demons, also called information ratchets, are an important conceptual link between computation, information theory, and statistical physics. They exploit low-entropy information reservoirs to extract work from a heat reservoir. Previous models of such demons have either ignored the cost of delivering bits to the demon from the information reservoir or assumed random access or infinite-dimensional information reservoirs to avoid such an issue. In this work we account for this cost when exploiting information reservoirs with physical structure and show that the dimensionality of the reservoir has a significant impact on the performance and phase diagram of the demon. We find that for conventional one-dimensional tapes the scope for work extraction is greatly reduced. An expression for the net-extracted work by demons exploring information reservoirs by means of biased random walks on d-dimensional, Z^{d}, information reservoirs is presented. Furthermore, we derive exact probabilities of recurrence in these systems, generalizing previously known results. We find that the demon is characterized by two critical dimensions. First, to extract work at zero bias the dimensionality of the information reservoir must be larger than d=2, corresponding to the dimensions where a simple random walker is transient. Second, for integer dimensions d>4 the unbiased random walk optimizes work extraction corresponding to the dimensions where a simple random walker is strongly transient.
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Affiliation(s)
- Richard E Spinney
- Complex Systems Research Group and Centre for Complex Systems, The University of Sydney, Sydney, New South Wales 2006, Australia
| | - Mikhail Prokopenko
- Complex Systems Research Group and Centre for Complex Systems, The University of Sydney, Sydney, New South Wales 2006, Australia
| | - Dominique Chu
- School of Computing, University of Kent, Canterbury CT2 7NF, United Kingdom
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45
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Uhl M, Seifert U. Force-dependent diffusion coefficient of molecular Brownian ratchets. Phys Rev E 2018; 98:022402. [PMID: 30253613 DOI: 10.1103/physreve.98.022402] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2018] [Indexed: 11/07/2022]
Abstract
We study the mean velocity and diffusion constant in three related models of molecular Brownian ratchets. Brownian ratchets can be used to describe translocation of biopolymers like DNA through nanopores in cells in the presence of chaperones on the trans side of the pore. Chaperones can bind to the polymer and prevent it from sliding back through the pore. First, we study a simple model that describes the translocation in terms of an asymmetric random walk. It serves as an introductory example but already captures the main features of a Brownian ratchet. We then provide an analytical expression for the diffusion constant in the classical model of a translocation ratchet that was first proposed by Peskin et al. [C. S. Peskin, G. M. Odell, and G. F. Oster, Cellular motions and thermal fluctuations: The Brownian ratchet, Biophys. J. 65, 316 (1993)BIOJAU0006-349510.1016/S0006-3495(93)81035-X]. This model is based on the assumption that the binding and unbinding of the chaperones are much faster than the diffusion of the DNA strand. To remedy this shortcoming, we propose a modified model that is also applicable if the (un)binding rates are finite. We calculate the force-dependent mean velocity and diffusivity for this model and compare the results to the original one. Our analysis shows that for large pulling forces the predictions of both models can differ strongly even if the (un)binding rates are large in comparison to the diffusion timescale but still finite. Furthermore, implications of the thermodynamic uncertainty relation on the efficiency of Brownian ratchets are discussed.
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Affiliation(s)
- Matthias Uhl
- II. Institut für Theoretische Physik, Universität Stuttgart, 70550 Stuttgart, Germany
| | - Udo Seifert
- II. Institut für Theoretische Physik, Universität Stuttgart, 70550 Stuttgart, Germany
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46
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Abstract
A central result of stochastic thermodynamics is that irreversible state transitions of Markovian systems entail a cost in terms of an infinite entropy production. A corollary of this is that strictly deterministic computation is not possible. Using a thermodynamically consistent model, we show that quasideterministic computation can be achieved at finite, and indeed modest cost with accuracies that are indistinguishable from deterministic behavior for all practical purposes. Concretely, we consider the entropy production of stochastic (Markovian) systems that behave like and and a not gates. Combinations of these gates can implement any logical function. We require that these gates return the correct result with a probability that is very close to 1, and additionally, that they do so within finite time. The central component of the model is a machine that can read and write binary tapes. We find that the error probability of the computation of these gates falls with the power of the system size, whereas the cost only increases linearly with the system size.
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Affiliation(s)
- Dominique Chu
- School of Computing, University of Kent, CT2 7NF, Canterbury, United Kingdom
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47
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Dixit PD, Wagoner J, Weistuch C, Pressé S, Ghosh K, Dill KA. Perspective: Maximum caliber is a general variational principle for dynamical systems. J Chem Phys 2018; 148:010901. [PMID: 29306272 DOI: 10.1063/1.5012990] [Citation(s) in RCA: 60] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
We review here Maximum Caliber (Max Cal), a general variational principle for inferring distributions of paths in dynamical processes and networks. Max Cal is to dynamical trajectories what the principle of maximum entropy is to equilibrium states or stationary populations. In Max Cal, you maximize a path entropy over all possible pathways, subject to dynamical constraints, in order to predict relative path weights. Many well-known relationships of non-equilibrium statistical physics-such as the Green-Kubo fluctuation-dissipation relations, Onsager's reciprocal relations, and Prigogine's minimum entropy production-are limited to near-equilibrium processes. Max Cal is more general. While it can readily derive these results under those limits, Max Cal is also applicable far from equilibrium. We give examples of Max Cal as a method of inference about trajectory distributions from limited data, finding reaction coordinates in bio-molecular simulations, and modeling the complex dynamics of non-thermal systems such as gene regulatory networks or the collective firing of neurons. We also survey its basis in principle and some limitations.
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Affiliation(s)
- Purushottam D Dixit
- Department of Systems Biology, Columbia University, New York, New York 10032, USA
| | - Jason Wagoner
- Laufer Center for Quantitative Biology, Stony Brook University, Stony Brook, New York 11794, USA
| | - Corey Weistuch
- Laufer Center for Quantitative Biology, Stony Brook University, Stony Brook, New York 11794, USA
| | - Steve Pressé
- Department of Physics and School of Molecular Sciences, Arizona State University, Tempe, Arizona 85281, USA
| | - Kingshuk Ghosh
- Department of Physics and Astronomy, University of Denver, Denver, Colorado 80208, USA
| | - Ken A Dill
- Laufer Center for Quantitative Biology, Stony Brook University, Stony Brook, New York 11794, USA
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48
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Ouldridge TE. The importance of thermodynamics for molecular systems, and the importance of molecular systems for thermodynamics. NATURAL COMPUTING 2018; 17:3-29. [PMID: 29576756 PMCID: PMC5856891 DOI: 10.1007/s11047-017-9646-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
Improved understanding of molecular systems has only emphasised the sophistication of networks within the cell. Simultaneously, the advance of nucleic acid nanotechnology, a platform within which reactions can be exquisitely controlled, has made the development of artificial architectures and devices possible. Vital to this progress has been a solid foundation in the thermodynamics of molecular systems. In this pedagogical review and perspective, we discuss how thermodynamics determines both the overall potential of molecular networks, and the minute details of design. We then argue that, in turn, the need to understand molecular systems is helping to drive the development of theories of thermodynamics at the microscopic scale.
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Affiliation(s)
- Thomas E. Ouldridge
- Department of Bioengineering, Imperial College London, South Kensington Campus, London, SW7 2AZ UK
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49
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Acconcia TV, Bonança MVS. Microcanonical Szilárd engines beyond the quasistatic regime. Phys Rev E 2017; 96:062117. [PMID: 29347443 DOI: 10.1103/physreve.96.062117] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2016] [Indexed: 11/07/2022]
Abstract
We discuss the possibility of extracting energy from a single thermal bath using microcanonical Szilárd engines operating in finite time. This extends previous works on the topic which are restricted to the quasistatic regime. The feedback protocol is implemented based on linear response predictions of the excess work. It is claimed that the underlying mechanism leading to energy extraction does not violate Liouville's theorem and preserves ergodicity throughout the cycle. We illustrate our results with several examples including an exactly solvable model.
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Affiliation(s)
- Thiago V Acconcia
- Instituto de Física "Gleb Wataghin," Universidade Estadual de Campinas, 777 Rua Sérgio Buarque de Holanda, Campinas, São Paulo 13083-859, Brazil
| | - Marcus V S Bonança
- Instituto de Física "Gleb Wataghin," Universidade Estadual de Campinas, 777 Rua Sérgio Buarque de Holanda, Campinas, São Paulo 13083-859, Brazil
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50
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Asban S, Rahav S. Nonequilibrium free-energy estimation conditioned on measurement outcomes. Phys Rev E 2017; 96:022155. [PMID: 28950599 DOI: 10.1103/physreve.96.022155] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2017] [Indexed: 11/07/2022]
Abstract
The Jarzynski equality is one of the most influential results in the field of nonequilibrium statistical mechanics. This celebrated equality allow the calculation of equilibrium free-energy differences from work distributions of nonequilibrium processes. In practice, such calculations often suffer from poor convergence due to the need to sample rare events. Here we examine if the inclusion of measurement and feedback can improve the convergence of nonequilibrium free-energy calculations. A modified version of the Jarzynski equality in which realizations with a given outcome are kept, while others are discarded, is used. We find that discarding realizations with unwanted outcomes can result in improved convergence compared to calculations based on the Jarzynski equality. We argue that the observed improved convergence is closely related to Bennett's acceptance ratio method, which was developed without any reference to measurements or feedback.
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Affiliation(s)
- Shahaf Asban
- Faculty of Physics, Technion - Israel Institute of Technology, Haifa 32000, Israel
| | - Saar Rahav
- Schulich Faculty of Chemistry, Technion - Israel Institute of Technology, Haifa 32000, Israel
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