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For: Facciotti MT. Thermodynamically inspired classifier for molecular phenotypes of health and disease. Proc Natl Acad Sci U S A 2013;110:19181-2. [PMID: 24204030 PMCID: PMC3845102 DOI: 10.1073/pnas.1317876110] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]  Open
Number Cited by Other Article(s)
1
Krishnan J, Torabi R, Schuppert A, Napoli ED. A modified Ising model of Barabási-Albert network with gene-type spins. J Math Biol 2020;81:769-798. [PMID: 32897406 PMCID: PMC7519008 DOI: 10.1007/s00285-020-01518-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2019] [Revised: 05/02/2020] [Indexed: 12/30/2022]
2
Rockne RC, Branciamore S, Qi J, Frankhouser DE, O'Meally D, Hua WK, Cook G, Carnahan E, Zhang L, Marom A, Wu H, Maestrini D, Wu X, Yuan YC, Liu Z, Wang LD, Forman S, Carlesso N, Kuo YH, Marcucci G. State-Transition Analysis of Time-Sequential Gene Expression Identifies Critical Points That Predict Development of Acute Myeloid Leukemia. Cancer Res 2020;80:3157-3169. [PMID: 32414754 PMCID: PMC7416495 DOI: 10.1158/0008-5472.can-20-0354] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2020] [Revised: 04/06/2020] [Accepted: 05/12/2020] [Indexed: 12/13/2022]
3
Personalized disease signatures through information-theoretic compaction of big cancer data. Proc Natl Acad Sci U S A 2018;115:7694-7699. [PMID: 29976841 DOI: 10.1073/pnas.1804214115] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]  Open
4
Kravchenko-Balasha N, Johnson H, White FM, Heath JR, Levine RD. A Thermodynamic-Based Interpretation of Protein Expression Heterogeneity in Different Glioblastoma Multiforme Tumors Identifies Tumor-Specific Unbalanced Processes. J Phys Chem B 2016;120:5990-7. [PMID: 27035264 DOI: 10.1021/acs.jpcb.6b01692] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
5
Statistical thermodynamics of transcription profiles in normal development and tumorigeneses in cohorts of patients. EUROPEAN BIOPHYSICS JOURNAL: EBJ 2015;44:709-26. [PMID: 26290059 DOI: 10.1007/s00249-015-1069-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2015] [Revised: 07/26/2015] [Accepted: 07/30/2015] [Indexed: 10/23/2022]
6
Kravchenko-Balasha N, Simon S, Levine RD, Remacle F, Exman I. Computational surprisal analysis speeds-up genomic characterization of cancer processes. PLoS One 2014;9:e108549. [PMID: 25405334 PMCID: PMC4236016 DOI: 10.1371/journal.pone.0108549] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2014] [Accepted: 08/31/2014] [Indexed: 01/18/2023]  Open
7
Surprisal analysis characterizes the free energy time course of cancer cells undergoing epithelial-to-mesenchymal transition. Proc Natl Acad Sci U S A 2014;111:13235-40. [PMID: 25157127 DOI: 10.1073/pnas.1414714111] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]  Open
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