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García-Ruano D, Venkova L, Jain A, Ryan JC, Balasubramaniam VR, Piel M, Coudreuse D. Fluorescence exclusion: a rapid, accurate and powerful method for measuring yeast cell volume. J Cell Sci 2022; 135:275598. [PMID: 35662333 DOI: 10.1242/jcs.259392] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Accepted: 05/26/2022] [Indexed: 11/20/2022] Open
Abstract
Cells exist in an astonishing range of volumes across and within species. However, our understanding of cell size control remains limited, due in large part to the challenges associated with accurate determination of cell volume. Much of our comprehension of size regulation derives from yeast models, but even for these morphologically stereotypical cells, assessment of cell volume has mostly relied on proxies and extrapolations from two-dimensional measurements. Recently, the fluorescence exclusion method (FXm) was developed to evaluate the size of mammalian cells, but whether it could be applied to smaller cells remained unknown. Using specifically designed microfluidic chips and an improved data analysis pipeline, we show here that FXm reliably detects subtle differences in the volume of fission yeast cells, even for those with altered shapes. Moreover, it allows for the monitoring of dynamic volume changes at the single-cell level with high time resolution. Collectively, our work highlights how the coupling of FXm with yeast genetics will bring new insights into the complex biology of cell growth.
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Affiliation(s)
- Daniel García-Ruano
- Institute of Genetics and Development of Rennes, UMR 6290, CNRS - University of Rennes 1, France
| | - Larisa Venkova
- Institut Curie and Institut Pierre Gilles de Gennes, PSL Research University, CNRS UMR 144, Paris, France.,Institute of Biochemistry and Cellular Genetics, CNRS UMR 5095, Bordeaux, France
| | - Akanksha Jain
- Institute of Genetics and Development of Rennes, UMR 6290, CNRS - University of Rennes 1, France
| | - Joseph C Ryan
- Institute of Genetics and Development of Rennes, UMR 6290, CNRS - University of Rennes 1, France
| | | | - Matthieu Piel
- Institut Curie and Institut Pierre Gilles de Gennes, PSL Research University, CNRS UMR 144, Paris, France
| | - Damien Coudreuse
- Institute of Genetics and Development of Rennes, UMR 6290, CNRS - University of Rennes 1, France.,Institute of Biochemistry and Cellular Genetics, CNRS UMR 5095, Bordeaux, France
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García P, Coll PM, Del Rey F, Geli MI, Pérez P, Vázquez de Aldana CR, Encinar Del Dedo J. Eng2, a new player involved in feedback loop regulation of Cdc42 activity in fission yeast. Sci Rep 2021; 11:17872. [PMID: 34504165 PMCID: PMC8429772 DOI: 10.1038/s41598-021-97311-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Accepted: 08/05/2021] [Indexed: 11/09/2022] Open
Abstract
Cell polarity and morphogenesis are regulated by the small GTPase Cdc42. Even though major advances have been done in the field during the last years, the molecular details leading to its activation in particular cellular contexts are not completely understood. In fission yeast, the β(1,3)-glucanase Eng2 is a "moonlighting protein" with a dual function, acting as a hydrolase during spore dehiscence, and as component of the endocytic machinery in vegetative cells. Here, we report that Eng2 plays a role in Cdc42 activation during polarized growth through its interaction with the scaffold protein Scd2, which brings Cdc42 together with its guanine nucleotide exchange factor (GEF) Scd1. eng2Δ mutant cells have defects in activation of the bipolar growth (NETO), remaining monopolar during all the cell cycle. In the absence of Eng2 the accumulation of Scd1 and Scd2 at the poles is reduced, the levels of Cdc42 activation decrease, and the Cdc42 oscillatory behavior, associated with bipolar growth in wild type cells, is altered. Furthermore, overexpression of Eng2 partially rescues the growth and polarity defects of a cdc42-L160S mutant. Altogether, our work unveils a new factor regulating the activity of Cdc42, which could potentially link the polarity and endocytic machineries.
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Affiliation(s)
- Patricia García
- Instituto de Biología Funcional y Genómica, CSIC/Universidad de Salamanca, c/ Zacarías González 2, 37007, Salamanca, Spain
| | - Pedro M Coll
- Instituto de Biología Funcional y Genómica, CSIC/Universidad de Salamanca, c/ Zacarías González 2, 37007, Salamanca, Spain
| | - Francisco Del Rey
- Instituto de Biología Funcional y Genómica, CSIC/Universidad de Salamanca, c/ Zacarías González 2, 37007, Salamanca, Spain
| | - M Isabel Geli
- Institute for Molecular Biology of Barcelona (CSIC), Baldiri Reixac 15, 08028, Barcelona, Spain
| | - Pilar Pérez
- Instituto de Biología Funcional y Genómica, CSIC/Universidad de Salamanca, c/ Zacarías González 2, 37007, Salamanca, Spain
| | - Carlos R Vázquez de Aldana
- Instituto de Biología Funcional y Genómica, CSIC/Universidad de Salamanca, c/ Zacarías González 2, 37007, Salamanca, Spain.
| | - Javier Encinar Del Dedo
- Instituto de Biología Funcional y Genómica, CSIC/Universidad de Salamanca, c/ Zacarías González 2, 37007, Salamanca, Spain.
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3
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Abstract
A conserved molecular machinery centered on the Cdc42 GTPase regulates cell polarity in diverse organisms. Here we review findings from budding and fission yeasts that reveal both a conserved core polarity circuit and several adaptations that each organism exploits to fulfill the needs of its lifestyle. The core circuit involves positive feedback by local activation of Cdc42 to generate a cluster of concentrated GTP-Cdc42 at the membrane. Species-specific pathways regulate the timing of polarization during the cell cycle, as well as the location and number of polarity sites.
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Affiliation(s)
- Jian-Geng Chiou
- Department of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, North Carolina 27710;
| | - Mohan K Balasubramanian
- Division of Biomedical Sciences, Warwick Medical School, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Daniel J Lew
- Department of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, North Carolina 27710;
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Revilla-Guarinos MT, Martín-García R, Villar-Tajadura MA, Estravís M, Coll PM, Pérez P. Rga6 is a Fission Yeast Rho GAP Involved in Cdc42 Regulation of Polarized Growth. Mol Biol Cell 2016; 27:mbc.E15-12-0818. [PMID: 26960792 PMCID: PMC4850039 DOI: 10.1091/mbc.e15-12-0818] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2015] [Revised: 03/03/2016] [Accepted: 03/04/2016] [Indexed: 11/15/2022] Open
Abstract
Active Cdc42 is essential for the establishment of polarized growth. This GTPase is negatively regulated by the GTPase-activating proteins (GAPs), which are important for the spatial specificity of Cdc42 function. Rga4 is the only GAP described as negative regulator of fission yeast Cdc42. We report here that Rga6 is another fission yeast Cdc42 GAP which shares some functions with Rga4. Cells lacking Rga6 are viable but slightly shorter and broader than wild type, and cells lacking Rga6 and Rga4 simultaneously are rounded. In these cells, active Cdc42 is observed all around the membrane. These additive effects indicate that both GAPs collaborate in the spatial regulation of active Cdc42. Rga6 localizes to the plasma membrane forming clusters different from those formed by Rga4. A polybasic region at the Rga6 C-terminus is responsible for its membrane localization. Rga6-GFP fluorescence decreases considerably at the growing tips, and this decrease is dependent on the actin cables. Notably, in the absence of Rga6 the amplitude of active Cdc42 oscillations at the tips decreases, and less GTP-Cdc42 accumulates at the new end of the cells. We propose here that Rga6 collaborates with Rga4 to spatially restrict active Cdc42 at the cell tips and maintain cell dimensions.
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Affiliation(s)
- M Teresa Revilla-Guarinos
- Instituto de Biología Funcional y Genómica, Consejo Superior de Investigaciones Científicas (CSIC) / Departamento de Microbiología y Genética, Universidad de Salamanca. Salamanca, Spain
| | - Rebeca Martín-García
- Instituto de Biología Funcional y Genómica, Consejo Superior de Investigaciones Científicas (CSIC) / Departamento de Microbiología y Genética, Universidad de Salamanca. Salamanca, Spain
| | - M Antonia Villar-Tajadura
- Instituto de Biología Funcional y Genómica, Consejo Superior de Investigaciones Científicas (CSIC) / Departamento de Microbiología y Genética, Universidad de Salamanca. Salamanca, Spain
| | - Miguel Estravís
- Instituto de Biología Funcional y Genómica, Consejo Superior de Investigaciones Científicas (CSIC) / Departamento de Microbiología y Genética, Universidad de Salamanca. Salamanca, Spain
| | - Pedro M Coll
- Instituto de Biología Funcional y Genómica, Consejo Superior de Investigaciones Científicas (CSIC) / Departamento de Microbiología y Genética, Universidad de Salamanca. Salamanca, Spain
| | - Pilar Pérez
- Instituto de Biología Funcional y Genómica, Consejo Superior de Investigaciones Científicas (CSIC) / Departamento de Microbiología y Genética, Universidad de Salamanca. Salamanca, Spain
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