Intact carbonic acid is a viable protonating agent for biological bases

Ab initio deep neural network simulations reveal that carbonic acid dissociation is dominated by minority cis-trans conformers

Carbonic acid (H2CO3), rather than water, serves as the primary protonating buffer regulating pH in biological systems and oceans. Its dissociation dynamics, driven by three conformers-cis-cis (CC), cis-trans (CT), and trans-trans (TT)-pose substantial experimental and theoretical challenges. Using deep potential molecular dynamics simulations with ab initio accuracy, we explored the dissociation dynamics of H2CO3 in solution on the nanosecond timescale. While the CC conformer is the most abundant, the CT conformer is the dominant proton donor. This enhanced deprotonation ability arises from the CT conformer's involvement in more hydrogen-bonding ring structures, enabling diverse proton transfer pathways, and its greater electronic asymmetry, which increases hydrophilicity and destabilizes the hydroxyl group. Furthermore, protons dissociated from the CT conformer demonstrate a stronger preference for the homing pathway. Our findings underscore the critical role of the topology and electronic properties of the CT conformer in aqueous H2CO3 dissociation and proton transfer.

Visible Light-Driven CO2 Capture and Release Using Photoactive Pyranine in Water in Continuous Flow

The urgent need to address climate change and its environmental consequences demands innovative carbon capture technologies, given the relationship between rising global temperatures and increased atmospheric CO2 levels. Here, we present a reversible photochemical carbon capture and release strategy and system utilizing photoactive pyranine in an aqueous bicarbonate buffer system. Control experiments suggested that the photoacid effect occurs at the surface which contributes to CO2 release, complemented by the photothermal effect at the surface and in the bulk. A continuous flow setup employing a tube-in-tube configuration with a hollow fiber membrane demonstrates the efficiency and reliability of the visible light-driven carbon capture system, with the release of CO2 captured from a 15% CO2 feed in the dark, at a rate of 0.48 mmol CO2 per hour to a nitrogen sweep stream under light irradiation at 200 W/m2, a level comparable to solar intensity of visible light (150 W/m2 of blue light -250 W/m2 of blue and green light). The robustness and scalability of the system has been demonstrated, with long-term operation over 7 days yielding 60 mmol (1.34 L CO2 at STP) of cumulated CO2 separation. Additionally, we explored the potential for direct air capture, yielding 3 μmol of CO2 separation over 2 h of operation from a bicarbonate buffer solution saturated with ambient air (420 ppm). This work introduces the prospect of photoswing of carbon capture systems, which can avoid external energy input beyond solar irradiation, offering promising avenues for addressing the challenges associated with climate change.

Tissue Perfusion and Diffusion and Cellular Respiration: Transport and Utilization of Oxygen

This article provides an overview of the journey of inspired oxygen after its uptake across the alveolar-capillary interface, and the interplay among tissue perfusion, diffusion, and cellular respiration in the transport and utilization of oxygen. The critical interactions between oxygen and its facilitative carriers (hemoglobin in red blood cells and myoglobin in muscle cells), and with other respiratory and vasoactive molecules (carbon dioxide, nitric oxide, and carbon monoxide), are emphasized to illustrate how this versatile system dynamically optimizes regional convective transport and diffusive gas exchange. The rates of reciprocal gas exchange in the lung and the periphery must be well-matched and sufficient for meeting the range of energy demands from rest to maximal stress but not excessive as to become toxic. The mobile red blood cells play a vital role in matching tissue perfusion and gas exchange by dynamically regulating the controlled uptake of oxygen and communicating regional metabolic signals across different organs. Intracellular oxygen diffusion and facilitation via myoglobin into the mitochondria, and utilization via electron transport chain and oxidative phosphorylation, are summarized. Physiological and pathophysiological adaptations are briefly described. Dysfunction of any component across this integrated system affects all other components and elicits corresponding structural and functional adaptation aimed at matching the capacities across the entire system and restoring equilibrium under normal and pathological conditions.

The primary photolysis of aqueous carbonate di-anions

We study the primary photolysis dynamics of aqueous carbonate, CO₃^2-(aq), and hydrogen carbonate, HCO₃^-(aq), when they are excited at λ = 200 nm. The photolysis is recorded with sub-picosecond time resolution using UV pump-Vis probe and UV pump-IR probe transient absorption spectroscopy and interpreted with the aid of density functional theory calculations. When CO₃^2- is excited via single photon absorption at λ = 200 nm, Φ(t = 20 ps) = 82 ± 5% of the excited di-anions either detach an electron or dissociate. The electron detachment takes place from the excited state in t < 1 ps and forms ground state CO₃˙^- and e_aq^-. Dissociation occurs from both the electronic ground and excited states of CO₃^2-. Dissociation from the CO₃^2- excited state is assisted by water molecules and forms CO₂˙^-, OH˙ and OH^-. The dissociation occurs both directly from the Franck-Condon region in t < 1 ps and indirectly with a time constant of τ = 13.9 ± 0.5 ps as the excited state relaxes. Dissociation of vibrationally excited CO₃^2- molecules in the electronic ground state is also assisted by water molecules and forms CO₂ and two OH^- anions. The dissociation and subsequent vibrational relaxation of CO₂ occur with a time constant of τ = 10.2 ± 0.5 ps. The residual 1 - Φ(t = 20 ps) = 18 ± 5% of the excited CO₃^2- di-anions return by internal conversion to the equilibrated CO₃^2- ground state with a time constant of τ = 4.0 ± 0.4 ps. The extinction coefficient of aqueous hydrogen carbonate HCO₃^-(aq) at λ = 200 nm is an order of magnitude smaller than that of carbonate, so even though the hydrogen carbonate anions dominate the carbonate di-anions in the hydrogen carbonate solution, the primary photolysis of hydrogen carbonate is obscured by the photo-products of carbonate. Hence, we are unable to assess the primary photolysis of hydrogen carbonate. However, the weak one-photon absorption facilitates two-photon ionization of water, which forms hydronium, H₃O⁺, cations. The sudden increase in the acidity induced by two-photon ionization protonates the ground state hydrogen carbonate molecules, thus offering a rare spectroscopic glimpse of aqueous carbonic acid.

Biologically Safe, Degradable Self-Destruction System for On-Demand, Programmable Transient Electronics

The lifetime of transient electronic components can be programmed via the use of encapsulation/passivation layers or of on-demand, stimuli-responsive polymers (heat, light, or chemicals), but yet most research is limited to slow dissolution rate, hazardous constituents, or byproducts, or complicated synthesis of reactants. Here we present a physicochemical destruction system with dissolvable, nontoxic materials as an efficient, multipurpose platform, where chemically produced bubbles rapidly collapse device structures and acidic molecules accelerate dissolution of functional traces. Extensive studies of composites based on biodegradable polymers (gelatin and poly(lactic-co-glycolic acid)) and harmless blowing agents (organic acid and bicarbonate salt) validate the capability for the desired system. Integration with wearable/recyclable electronic components, fast-degradable device layouts, and wireless microfluidic devices highlights potential applicability toward versatile/multifunctional transient systems. In vivo toxicity tests demonstrate biological safety of the proposed system.

Stabilizing the Exotic Carbonic Acid by Bisulfate Ion

Carbonic acid is an important species in a variety of fields and has long been regarded to be non-existing in isolated state, as it is thermodynamically favorable to decompose into water and carbon dioxide. In this work, we systematically studied a novel ionic complex [H2CO3·HSO4]- using density functional theory calculations, molecular dynamics simulations, and topological analysis to investigate if the exotic H2CO3 molecule could be stabilized by bisulfate ion, which is a ubiquitous ion in various environments. We found that bisulfate ion could efficiently stabilize all the three conformers of H2CO3 and reduce the energy differences of isomers with H2CO3 in three different conformations compared to the isolated H2CO3 molecule. Calculated isomerization pathways and ab initio molecular dynamics simulations suggest that all the optimized isomers of the complex have good thermal stability and could exist at finite temperatures. We also explored the hydrogen bonding properties in this interesting complex and simulated their harmonic infrared spectra to aid future infrared spectroscopic experiments. This work could be potentially important to understand the fate of carbonic acid in certain complex environments, such as in environments where both sulfuric acid (or rather bisulfate ion) and carbonic acid (or rather carbonic dioxide and water) exist.

Electron Flow Characterization of Charge Transfer for Carbonic Acid to Strong Base Proton Transfer in Aqueous Solution

Protonation of the strong base methylamine CH₃NH₂ by carbonic acid H₂CO₃ in aqueous solution, HOCOOH···NH₂CH₃ → HOCOO^-···⁺HNH₂CH₃, has been previously studied ( J. Phys. Chem. B 2016, 109, 2271-2280; J. Phys. Chem. B 2016, 109, 2281-2290) via Car-Parinnello molecular dynamics. This proton transfer (PT) reaction within a hydrogen (H)-bonded complex was found to be barrierless and very rapid, with key reaction coordinates comprising the proton coordinate, the H-bond separation R_ON, and a solvent coordinate, reflecting the water solvent rearrangement involved in the neutral to ion pair conversion. In the present work, the reaction's charge flow aspects are analyzed in detail, especially a description via Mulliken charge transfer for PT (MCTPT). A natural bond orbital analysis and some extensions of them are employed for the complex's electronic structure during the reaction trajectories. Results demonstrate that consistent with the MCTPT picture, the charge transfer (CT) occurs from a methylamine base nonbonding orbital to a carbonic acid antibonding orbital. A complementary MCTPT reaction product perspective of CT from the antibonding orbital of the HN⁺ moiety to the nonbonding orbital of the oxygen in the H-bond complex is also presented. σ_OH and σ_HN⁺ bond order expressions show this CT to occur within the H-bond OHN triad, an aspect key for simultaneous bond-breaking and -forming in the PT reaction.

Design and evaluation of pH-responsive hydrogel for oral delivery of amifostine and study on its radioprotective effects

The purpose of this study was to develop a novel pH-sensitive hydrogel which was used to regulate the acute radiation syndrome (ARS). The hydrogel was fabricated by grafting polycaprolactone onto methacrylic acid copolymer (MAC-g-PCL). Fourier transform infrared spectroscopy (FTIR) and nuclear magnetic resonance (¹H NMR) confirmed the obtaining of MAC-g-PCL hydrogel. The hydrogel was pH-sensitive, at pH 1.2, it was compact hydrogel, but at pH7.4, it was dissolved solution. Its inner 3D morphology was observed by scanning electron microscope (SEM). Cell experiments indicated that the MAC-g-PCL hyrogel was out of cytotoxicity. The release profile of amifostine showed that small amount drug release in simulated gastric fluid (pH 1.2) and burst release in simulated intestinal fluid (pH 7.4). Thus, the pH-sensitive hydrogels could protect amifostine from enzymatic degradation in acidic stomach and deliver effectively in the intestine. The radioprotective efficacy was determined by peripheral complete blood parameters and 30-day survival study in mice acutely exposed to 4 Gy γ-ray total body irradiation. Results suggested that oral administration MAC-g-PCL/Ami before total body irradiation protected the mice from hematopoietic ARS and enhanced their survival. Furthermore, in vivo bio-distribution studies indicated that the drug could be sustained delivered at intestinal tract and entered the bloodstream. These results demonstrated that oral administration of amifostine hydrogel provided effective radioprotection to reduce the ARS injury.

Spectroscopic evidence for intact carbonic acid stabilized by halide anions in the gas phase

The whole series of halide anions can stabilize elusive carbonic acid in the gas phase through dual hydrogen bonds.