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Domoto Y, Nakabayashi R, Tsurumi T, Yamamoto K, Hayashi H, Nakamura Y, Fujita M. Fine-Tuning of the Sequential Self-Assembly of Entangled Polyhedra by Exploiting the Side-Chain Effect. Chem Asian J 2025; 20:e202401378. [PMID: 39792591 DOI: 10.1002/asia.202401378] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2024] [Revised: 12/13/2024] [Indexed: 01/12/2025]
Abstract
The control of the sequential self-assembly processes of highly entangled (Ag3L2)n (n=2,4,6,8) and Ag21L12 coordination polyhedra using side-chain effects was studied via the introduction of linear or branched side chains into the tripodal ligands. In addition to changes in the intermediate polyhedral species affording the multi- pathway process, disruption of the kinetic control of the sequential self-assembly was observed, thus demonstrating the utility of steric control for the construction of 3D-entangled molecular materials on the 5 nm scale with high molecular complexity.
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Affiliation(s)
- Yuya Domoto
- Division of Molecular Science, Graduate School of Science and Technology, Gunma University, 1-5-1 Tenjin-cho, Kiryu-shi, Gunma, 376-8515, Japan
| | - Ren Nakabayashi
- Division of Molecular Science, Graduate School of Science and Technology, Gunma University, 1-5-1 Tenjin-cho, Kiryu-shi, Gunma, 376-8515, Japan
| | - Tasuki Tsurumi
- Division of Molecular Science, Graduate School of Science and Technology, Gunma University, 1-5-1 Tenjin-cho, Kiryu-shi, Gunma, 376-8515, Japan
| | - Kidai Yamamoto
- Tokyo College, U-Tokyo Institutes for Advanced Study (UTIAS), The University of Tokyo, Mitsui Link Lab Kashiwanoha 1, FS CREATION, 6-6-2 Kashiwanoha, Kashiwa-shi, Chiba, 277-0882, Japan
| | - Hironobu Hayashi
- Center for Basic Research on Materials, National Institute for Materials Science (NIMS), 1-2-1 Sengen, Tsukuba-shi, Ibaraki, 305-0047, Japan
| | - Yosuke Nakamura
- Division of Molecular Science, Graduate School of Science and Technology, Gunma University, 1-5-1 Tenjin-cho, Kiryu-shi, Gunma, 376-8515, Japan
| | - Makoto Fujita
- Tokyo College, U-Tokyo Institutes for Advanced Study (UTIAS), The University of Tokyo, Mitsui Link Lab Kashiwanoha 1, FS CREATION, 6-6-2 Kashiwanoha, Kashiwa-shi, Chiba, 277-0882, Japan
- Division of Advanced Molecular Science, Institute for Molecular Science, National Institutes of Natural Sciences, 5-1 Higashiyama, Myodaiji-cho, Okazaki-shi, Aichi, 444-8787, Japan
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Baby Sainaba A, Venkateswarulu M, Bhandari P, Clegg JK, Sarathi Mukherjee P. Self-Assembly of an [M 8 L2 4 ] 16+ Intertwined Cube and a Giant [M 12 L1 6 ] 24+ Orthobicupola. Angew Chem Int Ed Engl 2024; 63:e202315572. [PMID: 37985377 DOI: 10.1002/anie.202315572] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 11/16/2023] [Accepted: 11/17/2023] [Indexed: 11/22/2023]
Abstract
Through coordination-driven self-assembly, aesthetically captivating structures can be formed by tuning the length or flexibility of various components. The self-assembly of an elongated rigid terphenyl-based tetra-pyridyl ligand (L1) with a cis-Pd(II) acceptor produces an [M12 L16 ]24+ triangular orthobicupola structure (1). When flexibility is introduced into the ligand by the incorporation of a -CH2 - group between the dipyridylamine and terphenyl rings in the ligand (L2), anunique [M8 L24 ]16+ water-soluble 'intertwined cubic structure' (2) results. The inherent flexibility of ligand L2 might be the key factor behind the formation of the thermodynamically stable and 'intertwined cubic structure' in this scenario. This research showcases the ability to design and fabricate novel, topologically distinctive molecular structures by a straightforward and efficient approach.
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Affiliation(s)
- Arppitha Baby Sainaba
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore, 560012, India
| | - Mangili Venkateswarulu
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore, 560012, India
| | - Pallab Bhandari
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore, 560012, India
| | - Jack K Clegg
- School of Chemistry and Molecular Biosciences, The University of Queensland-St. Lucia, St. Lucia, Queensland 4072, Australia
| | - Partha Sarathi Mukherjee
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore, 560012, India
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O'Keeffe M, Treacy MMJ. Piecewise-linear embeddings of decussate extended θ graphs and tetrahedra. Acta Crystallogr A Found Adv 2022; 78:498-506. [DOI: 10.1107/s2053273322008750] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Accepted: 08/31/2022] [Indexed: 11/15/2022] Open
Abstract
An nθ graph is an n-valent graph with two vertices. From symmetry considerations, it has vertex–edge transitivity 1 1. Here, they are considered extended with divalent vertices added to the edges to explore the simplest piecewise-linear tangled embeddings with straight, non-intersecting edges (sticks). The simplest tangles found are those with 3n sticks, transitivity 2 2, and with 2⌊(n − 1)/2⌋ ambient-anisotopic tangles. The simplest finite and 1-, 2- and 3-periodic decussate structures (links and tangles) are described. These include finite cubic and icosahedral and 1- and 3-periodic links, all with minimal transitivity. The paper also presents the simplest tangles of extended tetrahedra and their linkages to form periodic polycatenanes. A vertex- and edge-transitive embedding of a tangled srs net with tangled and polycatenated θ graphs and vertex-transitive tangled diamond (dia) nets are described.
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Domoto Y, Fujita M. Self-assembly of nanostructures with high complexity based on metal⋯unsaturated-bond coordination. Coord Chem Rev 2022. [DOI: 10.1016/j.ccr.2022.214605] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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Symmetric Tangling of Honeycomb Networks. Symmetry (Basel) 2022. [DOI: 10.3390/sym14091805] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Symmetric, elegantly entangled structures are a curious mathematical construction that has found their way into the heart of the chemistry lab and the toolbox of constructive geometry. Of particular interest are those structures—knots, links and weavings—which are composed locally of simple twisted strands and are globally symmetric. This paper considers the symmetric tangling of multiple 2-periodic honeycomb networks. We do this using a constructive methodology borrowing elements of graph theory, low-dimensional topology and geometry. The result is a wide-ranging enumeration of symmetric tangled honeycomb networks, providing a foundation for their exploration in both the chemistry lab and the geometers toolbox.
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Ma L, Li Y, Li X, Zhang L, Sun L, Han Y. A Molecular “
A
‐Type” Tangled Metallocube. Angew Chem Int Ed Engl 2022; 61:e202208376. [DOI: 10.1002/anie.202208376] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2022] [Indexed: 11/06/2022]
Affiliation(s)
- Li‐Li Ma
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education College of Chemistry and Materials Science Northwest University Xi'an 710127 P. R. China
| | - Yang Li
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education College of Chemistry and Materials Science Northwest University Xi'an 710127 P. R. China
| | - Xin Li
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education College of Chemistry and Materials Science Northwest University Xi'an 710127 P. R. China
| | - Le Zhang
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education College of Chemistry and Materials Science Northwest University Xi'an 710127 P. R. China
| | - Li‐Ying Sun
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education College of Chemistry and Materials Science Northwest University Xi'an 710127 P. R. China
| | - Ying‐Feng Han
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education College of Chemistry and Materials Science Northwest University Xi'an 710127 P. R. China
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Ma LL, Li Y, Li X, Zhang L, Sun LY, Han YF. A Molecular “A‐Type” Tangled Metallocube. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202208376] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Li-Li Ma
- Northwest University College of Chemistry and Materials Science 1 Xuefu Ave., Guodu Education and Hi-Tech Industries Zone, Chang’an District 710127 CHINA
| | - Yang Li
- Northwest University College of Chemistry and Materials Science 1 Xuefu Ave., Guodu Education and Hi-Tech Industries Zone, Chang’an District 710127 CHINA
| | - Xin Li
- Northwest University College of Chemistry and Materials Science 1 Xuefu Ave., Guodu Education and Hi-Tech Industries Zone, Chang’an District 710127 CHINA
| | - Le Zhang
- Northwest University College of Chemistry and Materials Science 1 Xuefu Ave., Guodu Education and Hi-Tech Industries Zone, Chang’an District 710127 CHINA
| | - Li-Ying Sun
- Northwest University College of Chemistry and Materials Science 1 Xuefu Ave., Guodu Education and Hi-Tech Industries Zone, Chang’an District 710127 CHINA
| | - Ying-Feng Han
- Northwest University College of Chemistry and Materials Science 1 Xuefu Ave., Guodu Education and Hi-Tech Industries Zone, Chang’an District 710127 Xi'an CHINA
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Domoto Y, Yamamoto K, Horie S, Yu Z, Fujita M. Amplification of weak chiral inductions for excellent control over the helical orientation of discrete topologically chiral (M 3L 2) n polyhedra. Chem Sci 2022; 13:4372-4376. [PMID: 35509455 PMCID: PMC9006968 DOI: 10.1039/d2sc00111j] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2022] [Accepted: 03/21/2022] [Indexed: 11/21/2022] Open
Abstract
Superb control over the helical chirality of discrete (M3L2)n polyhedra (n = 2,4,8, M = CuI or AgI) created from the self-assembly of propeller-shaped ligands (L) equipped with chiral side chains is demonstrated here. Almost perfect chiral induction (>99 : 1) of the helical orientation of the framework was achieved for the largest (M3L2)8 cube with 48 small chiral side chains (diameter: ∼5 nm), while no or moderate chiral induction was observed for smaller polyhedra (n = 2, 4). Thus, amplification of the weak chiral inductions of each ligand unit is an efficient way to control the chirality of large discrete nanostructures with high structural complexity. Superb control over the helical chirality of highly-entangled (M3L2)n polyhedra (M = Cu(i), Ag(i); n = 2,4,8) was achieved via multiplication of weak chiral inductions by side chains accumulated on the huge polyhedral surfaces.![]()
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Affiliation(s)
- Yuya Domoto
- Department of Applied Chemistry, The University of Tokyo 7-3-1 Hongo, Bunkyo-ku Tokyo 113-8656 Japan
| | - Kidai Yamamoto
- Department of Applied Chemistry, The University of Tokyo 7-3-1 Hongo, Bunkyo-ku Tokyo 113-8656 Japan
| | - Shumpei Horie
- Department of Applied Chemistry, The University of Tokyo 7-3-1 Hongo, Bunkyo-ku Tokyo 113-8656 Japan
| | - Zhengsu Yu
- Department of Applied Chemistry, The University of Tokyo 7-3-1 Hongo, Bunkyo-ku Tokyo 113-8656 Japan
| | - Makoto Fujita
- Department of Applied Chemistry, The University of Tokyo 7-3-1 Hongo, Bunkyo-ku Tokyo 113-8656 Japan .,Division of Advanced Molecular Science, Institute for Molecular Science, National Institutes of Natural Sciences 5-1 Higashiyama, Myodaiji-cho Okazaki-shi Aichi 444-8787 Japan
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