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For: Franch T, Thisted T, Gerdes K. Ribonuclease III processing of coaxially stacked RNA helices. J Biol Chem 1999;274:26572-8. [PMID: 10473621 DOI: 10.1074/jbc.274.37.26572] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
Number Cited by Other Article(s)
1
Chan J, Qinqin F, Jianwei L, Ying C, Machida S, Wei C, Yuan YA, Jobichen C. Structural and mechanistic insight into stem-loop RNA processing by yeast Pichia stipitis Dicer. Protein Sci 2021;30:1210-1220. [PMID: 33884665 DOI: 10.1002/pro.4086] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2020] [Revised: 04/16/2021] [Accepted: 04/20/2021] [Indexed: 11/11/2022]
2
Altuvia Y, Bar A, Reiss N, Karavani E, Argaman L, Margalit H. In vivo cleavage rules and target repertoire of RNase III in Escherichia coli. Nucleic Acids Res 2019;46:10380-10394. [PMID: 30113670 PMCID: PMC6212723 DOI: 10.1093/nar/gky684] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2018] [Accepted: 07/18/2018] [Indexed: 12/02/2022]  Open
3
Gao Y, Yurkovich JT, Seo SW, Kabimoldayev I, Dräger A, Chen K, Sastry AV, Fang X, Mih N, Yang L, Eichner J, Cho BK, Kim D, Palsson BO. Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655. Nucleic Acids Res 2018;46:10682-10696. [PMID: 30137486 PMCID: PMC6237786 DOI: 10.1093/nar/gky752] [Citation(s) in RCA: 53] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2018] [Revised: 07/11/2018] [Accepted: 08/08/2018] [Indexed: 02/03/2023]  Open
4
Tata M, Amman F, Pawar V, Wolfinger MT, Weiss S, Häussler S, Bläsi U. The Anaerobically Induced sRNA PaiI Affects Denitrification in Pseudomonas aeruginosa PA14. Front Microbiol 2017;8:2312. [PMID: 29218039 PMCID: PMC5703892 DOI: 10.3389/fmicb.2017.02312] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2017] [Accepted: 11/08/2017] [Indexed: 01/08/2023]  Open
5
Characterization of ribonuclease III from Brucella. Gene 2016;579:183-92. [PMID: 26778206 DOI: 10.1016/j.gene.2015.12.068] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2015] [Revised: 12/22/2015] [Accepted: 12/29/2015] [Indexed: 11/22/2022]
6
Court DL, Gan J, Liang YH, Shaw GX, Tropea JE, Costantino N, Waugh DS, Ji X. RNase III: Genetics and function; structure and mechanism. Annu Rev Genet 2014;47:405-31. [PMID: 24274754 DOI: 10.1146/annurev-genet-110711-155618] [Citation(s) in RCA: 119] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
7
Romilly C, Chevalier C, Marzi S, Masquida B, Geissmann T, Vandenesch F, Westhof E, Romby P. Loop-loop interactions involved in antisense regulation are processed by the endoribonuclease III in Staphylococcus aureus. RNA Biol 2012;9:1461-72. [PMID: 23134978 DOI: 10.4161/rna.22710] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
8
When ribonucleases come into play in pathogens: a survey of gram-positive bacteria. Int J Microbiol 2012;2012:592196. [PMID: 22550495 PMCID: PMC3328962 DOI: 10.1155/2012/592196] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2011] [Accepted: 11/27/2011] [Indexed: 11/20/2022]  Open
9
Bergeron L, Perreault JP, Abou Elela S. Short RNA duplexes guide sequence-dependent cleavage by human Dicer. RNA (NEW YORK, N.Y.) 2010;16:2464-73. [PMID: 20974746 PMCID: PMC2995407 DOI: 10.1261/rna.2346510] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2010] [Accepted: 09/16/2010] [Indexed: 05/30/2023]
10
Staphylococcus aureus endoribonuclease III purification and properties. Methods Enzymol 2009. [PMID: 19161850 DOI: 10.1016/s0076-6879(08)02216-7] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/27/2023]
11
Bouvier M, Sharma CM, Mika F, Nierhaus KH, Vogel J. Small RNA binding to 5' mRNA coding region inhibits translational initiation. Mol Cell 2009;32:827-37. [PMID: 19111662 DOI: 10.1016/j.molcel.2008.10.027] [Citation(s) in RCA: 212] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2008] [Revised: 09/22/2008] [Accepted: 10/21/2008] [Indexed: 10/21/2022]
12
Gerdes K, Wagner EGH. RNA antitoxins. Curr Opin Microbiol 2007;10:117-24. [PMID: 17376733 DOI: 10.1016/j.mib.2007.03.003] [Citation(s) in RCA: 188] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2006] [Accepted: 03/08/2007] [Indexed: 01/29/2023]
13
Urban JH, Vogel J. Translational control and target recognition by Escherichia coli small RNAs in vivo. Nucleic Acids Res 2007;35:1018-37. [PMID: 17264113 PMCID: PMC1807950 DOI: 10.1093/nar/gkl1040] [Citation(s) in RCA: 293] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
14
Faridani OR, Nikravesh A, Pandey DP, Gerdes K, Good L. Competitive inhibition of natural antisense Sok-RNA interactions activates Hok-mediated cell killing in Escherichia coli. Nucleic Acids Res 2006;34:5915-22. [PMID: 17065468 PMCID: PMC1635323 DOI: 10.1093/nar/gkl750] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
15
Pertzev AV, Nicholson AW. Characterization of RNA sequence determinants and antideterminants of processing reactivity for a minimal substrate of Escherichia coli ribonuclease III. Nucleic Acids Res 2006;34:3708-21. [PMID: 16896014 PMCID: PMC1540722 DOI: 10.1093/nar/gkl459] [Citation(s) in RCA: 61] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]  Open
16
Zer C, Chanfreau G. Regulation and surveillance of normal and 3'-extended forms of the yeast aci-reductone dioxygenase mRNA by RNase III cleavage and exonucleolytic degradation. J Biol Chem 2005;280:28997-9003. [PMID: 15967792 DOI: 10.1074/jbc.m505913200] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
17
Gottesman S. Stealth regulation: biological circuits with small RNA switches. Genes Dev 2002;16:2829-42. [PMID: 12435626 DOI: 10.1101/gad.1030302] [Citation(s) in RCA: 97] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
18
Møller T, Franch T, Udesen C, Gerdes K, Valentin-Hansen P. Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon. Genes Dev 2002;16:1696-706. [PMID: 12101127 PMCID: PMC186370 DOI: 10.1101/gad.231702] [Citation(s) in RCA: 235] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
19
Conrad C, Rauhut R. Ribonuclease III: new sense from nuisance. Int J Biochem Cell Biol 2002;34:116-29. [PMID: 11809414 DOI: 10.1016/s1357-2725(01)00112-1] [Citation(s) in RCA: 59] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
20
Møller T, Franch T, Højrup P, Keene DR, Bächinger HP, Brennan RG, Valentin-Hansen P. Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction. Mol Cell 2002;9:23-30. [PMID: 11804583 DOI: 10.1016/s1097-2765(01)00436-1] [Citation(s) in RCA: 427] [Impact Index Per Article: 18.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
21
Wu CY, Fu JF, Liu ST. The replicon of pSW800 from Pantoea stewartii. MICROBIOLOGY (READING, ENGLAND) 2001;147:2757-2767. [PMID: 11577155 DOI: 10.1099/00221287-147-10-2757] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
22
Erdmann VA, Barciszewska MZ, Szymanski M, Hochberg A, de Groot N, Barciszewski J. The non-coding RNAs as riboregulators. Nucleic Acids Res 2001;29:189-93. [PMID: 11125087 PMCID: PMC29806 DOI: 10.1093/nar/29.1.189] [Citation(s) in RCA: 91] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
23
Franch T, Gerdes K. U-turns and regulatory RNAs. Curr Opin Microbiol 2000;3:159-64. [PMID: 10744992 DOI: 10.1016/s1369-5274(00)00069-2] [Citation(s) in RCA: 58] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
24
Franch T, Petersen M, Wagner EG, Jacobsen JP, Gerdes K. Antisense RNA regulation in prokaryotes: rapid RNA/RNA interaction facilitated by a general U-turn loop structure. J Mol Biol 1999;294:1115-25. [PMID: 10600370 DOI: 10.1006/jmbi.1999.3306] [Citation(s) in RCA: 128] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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