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Bakheit AH, Alkahtani HM. Integrated Structural, Functional, and ADMET Analysis of 2-Methoxy-4,6-diphenylnicotinonitrile: The Convergence of X-ray Diffraction, Molecular Docking, Dynamic Simulations, and Advanced Computational Insights. Molecules 2023; 28:6859. [PMID: 37836701 PMCID: PMC10574294 DOI: 10.3390/molecules28196859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Revised: 09/21/2023] [Accepted: 09/22/2023] [Indexed: 10/15/2023] Open
Abstract
This study systematically investigates the molecular structure and electronic properties of 2-methoxy-4,6-diphenylnicotinonitrile, employing X-ray diffraction (XRD) and sophisticated computational methodologies. XRD findings validate the compound's orthorhombic crystallization in the P21212 space group, composed of a pyridine core flanked by two phenyl rings. Utilizing the three-dimensional Hirshfeld surface, the research decodes the molecule's spatial attributes, further supported by exhaustive statistical assessments. Key interactions, such as π-π stacking and H⋯X contacts, are spotlighted, underscoring their role in the crystal's inherent stability and characteristics. Energy framework computations and density functional theory (DFT) analyses elucidate the prevailing forces in the crystal and reveal geometric optimization facets and molecular reactivity descriptors. Emphasis is given to the exploration of frontier molecular orbitals (FMOs), aromaticity, and π-π stacking capacities. The research culminates in distinguishing electron density distributions, aromatic nuances, and potential reactivity hotspots, providing a holistic view of the compound's structural and electronic landscape. Concurrently, molecular docking investigates its interaction with the lipoprotein-associated phospholipase A2 protein. Notably, the compound showcases significant interactions with the protein's active site. Molecular dynamics simulations reveal the compound's influence on protein stability and flexibility. Although the molecule exhibits strong inhibitory potential against Lp-PLA2, its drug development prospects face challenges related to solubility and interactions with drug transport proteins.
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Affiliation(s)
- Ahmed H. Bakheit
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P.O. Box 2457, Riyadh 11451, Saudi Arabia;
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El-Sayed HA, Moustafa AH, Farargy AFE, Mohammed SM, Saudy E, Gad EM. Novel Triazole-, Oxadiazole-, and Pyrazole-Nicotinonitrile Hybrids: Synthesis, DFT Study, Molecular Docking, and Antimicrobial Activity. RUSS J GEN CHEM+ 2022. [DOI: 10.1134/s1070363222040120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Mohammed SM, Moustafa AH, El-Sayed HA, Ayman A, Mohamed ASA. Functionalization of α-Aminonicotinonitrile: A New Entry for Synthesis of Pyrazolo[3,4-b]pyridine, Pyrido[2,3-d]pyrimidine, and 1,8-Naphthyridine Derivatives. RUSS J GEN CHEM+ 2022. [DOI: 10.1134/s1070363222020219] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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El‐Sayed HA, Moustafa AH, Masry AA, Amer AM, Mohammed SM. An efficient synthesis of 4,6‐diarylnicotinonitrile‐acetamide hybrids via 1,2,3‐triazole linker as multitarget microbial inhibitors. J Heterocycl Chem 2021. [DOI: 10.1002/jhet.4381] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Affiliation(s)
- Hassan A. El‐Sayed
- Department of Chemistry, Faculty of Science Zagazig University Zagazig Egypt
| | - Ahmed H. Moustafa
- Department of Chemistry, Faculty of Science Zagazig University Zagazig Egypt
| | - Asmaa A. Masry
- Department of Chemistry, Faculty of Science Zagazig University Zagazig Egypt
| | - Atef M. Amer
- Department of Chemistry, Faculty of Science Zagazig University Zagazig Egypt
| | - Samar M. Mohammed
- Department of Chemistry, Faculty of Science Zagazig University Zagazig Egypt
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Rashdan HRM, Shehadi IA, Abdelrahman MT, Hemdan BA. Antibacterial Activities and Molecular Docking of Novel Sulfone Biscompound Containing Bioactive 1,2,3-Triazole Moiety. Molecules 2021; 26:molecules26164817. [PMID: 34443405 PMCID: PMC8399954 DOI: 10.3390/molecules26164817] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Revised: 08/06/2021] [Accepted: 08/07/2021] [Indexed: 11/16/2022] Open
Abstract
In this study, a new synthetic 1,2,3-triazole-containing disulfone compound was derived from dapsone. Its chemical structure was confirmed using microchemical and analytical data, and it was tested for its in vitro antibacterial potential. Six different pathogenic bacteria were selected. MICs values and ATP levels were determined. Further, toxicity performance was measured using MicroTox Analyzer. In addition, a molecular docking study was performed against two vital enzymes: DNA gyrase and Dihydropteroate synthase. The results of antibacterial abilities showed that the studied synthetic compound had a strong bactericidal effect against all tested bacterial strains, as Gram-negative species were more susceptible to the compound than Gram-positive species. Toxicity results showed that the compound is biocompatible and safe without toxic impact. The molecular docking of the compound showed interactions within the pocket of two enzymes, which are able to stabilize the compound and reveal its antimicrobial activity. Hence, from these results, this study recommends that the established compound could be an outstanding candidate for fighting a broad spectrum of pathogenic bacterial strains, and it might therefore be used for biomedical and pharmaceutical applications.
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Affiliation(s)
- Huda R. M. Rashdan
- Chemistry of Natural and Microbial Products Department, Pharmaceutical and Drug Industries Research Division, National Research Centre, Dokki, Cairo 12622, Egypt
- Correspondence:
| | - Ihsan A. Shehadi
- Chemistry Department, College of Science, University of Sharjah, Sharjah 27272, United Arab Emirates;
| | - Mohamad T. Abdelrahman
- Radioisotopes Department, Nuclear Research Centre, Egyptian Atomic Energy Authority, Cairo 12311, Egypt;
| | - Bahaa A. Hemdan
- Water Pollution Research Department, Environmental Research Division, National Research Centre, 33 El Buhouth Street, Cairo 12622, Egypt;
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Kumar S, Sharma B, Mehra V, Kumar V. Recent accomplishments on the synthetic/biological facets of pharmacologically active 1H-1,2,3-triazoles. Eur J Med Chem 2020; 212:113069. [PMID: 33388593 DOI: 10.1016/j.ejmech.2020.113069] [Citation(s) in RCA: 48] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2020] [Revised: 11/23/2020] [Accepted: 11/29/2020] [Indexed: 12/11/2022]
Abstract
The continuous demand of medicinally important scaffolds has prompted the synthetic chemists to identify simple and efficient routes for their synthesis. 1H-1,2,3-triazole, obtained by highly versatile, efficacious and selective "Click Reaction" has become a synthetic/medicinal chemist's favorite not only because of its ability to mimic different functional groups but also due to enhancement in the targeted biological activities. Triazole ring has also been shown to play a critical role in biomolecular mimetics, fragment-based drug design, and bioorthogonal methodologies. In addition, the availability of triazole containing drugs such as fluconazole, furacyclin, etizolam, voriconazole, triozolam etc. in market has underscored the potential of this biologically enriched core in expediting development of new scaffolds. The present review, therefore, is an attempt to highlight the recent synthetic/biological advancements in triazole derivatives that could facilitate the in-depth understanding of its role in the drug discovery process.
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Affiliation(s)
- Sumit Kumar
- Department of Chemistry, Guru Nanak Dev University, Amritsar, 143005, Punjab, India
| | - Bharvi Sharma
- Department of Chemistry, Guru Nanak Dev University, Amritsar, 143005, Punjab, India
| | - Vishu Mehra
- Department of Chemistry, Hindu College, Amritsar, Punjab, 143001, India
| | - Vipan Kumar
- Department of Chemistry, Guru Nanak Dev University, Amritsar, 143005, Punjab, India.
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Moustafa AH, Mohammed SM, El-Salam EAA, El-Sayed HA. Synthesis and Antimicrobial Activity of New 3H-Chromeno[2,3-d]pyrimidine Derivatives. RUSS J GEN CHEM+ 2020. [DOI: 10.1134/s1070363220080277] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Hamid AMA, El-Sayed HA, Mohammed SM, Moustafa AH, Morsy HA. Functionalization of 1,2,3-Triazole to Pyrimidine, Pyridine, Pyrazole, and Isoxazole Fluorophores with Antimicrobial Activity. RUSS J GEN CHEM+ 2020. [DOI: 10.1134/s1070363220030226] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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El‐Sayed HA, Moustafa AH, Abd El‐Salam EA. Design and synthesis of
D‐π‐A
fluorescent dyes based on nicotinonitrile and azobenzene derivatives. J Heterocycl Chem 2020. [DOI: 10.1002/jhet.3982] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Hassan A. El‐Sayed
- Department of Chemistry, Faculty of ScienceZagazig University Zagazig Egypt
| | - Ahmed H. Moustafa
- Department of Chemistry, Faculty of ScienceZagazig University Zagazig Egypt
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El-Sayed HA, Assy MG, Mahmoud WM, El-Sheakh AA, Morsy HA. A Facile Synthesis of Polycyclic Pyrimidine Fluorophores via Inter- and Intramolecular Cyclization of Activated 2-Amino-3,6-disubstitued Pyrimidin-4-ones. RUSS J GEN CHEM+ 2020. [DOI: 10.1134/s1070363220010235] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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Morsy HA, Mohammed SM, Abdel Hamid AM, Moustafa AH, El-Sayed HA. Click Synthesis of 1,2,3-Triazole Nucleosides Based on Functionalized Nicotinonitriles. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2020. [DOI: 10.1134/s1070428020010224] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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El-Sayed HA, Assy MG, S. Mohamed A. An efficient synthesis and antimicrobial activity of N-bridged triazolo[3,4-b]thiadiazine and triazolo[3,4-b]thiadiazole derivatives under microwave irradiation. SYNTHETIC COMMUN 2020. [DOI: 10.1080/00397911.2020.1726397] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
- Hassan A. El-Sayed
- Department of Chemistry, Faculty of Science, Zagazig University, Zagazig, Egypt
| | - Mohamed G. Assy
- Department of Chemistry, Faculty of Science, Zagazig University, Zagazig, Egypt
| | - Asaad S. Mohamed
- Department of Chemistry, Faculty of Science, Zagazig University, Zagazig, Egypt
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Hussein EM, El Guesmi N, Ahmed SA. Exploiting a multicomponent domino reaction strategy for the tailoring of versatile environmentally sensitive fluorophore-based nicotinonitriles incorporating pyrene and fluorene moieties. RSC Adv 2019; 9:40118-40130. [PMID: 35541404 PMCID: PMC9076224 DOI: 10.1039/c9ra09379f] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2019] [Accepted: 11/21/2019] [Indexed: 01/02/2023] Open
Abstract
A simplistic and highly effective protocol for the synthesis of a new class of poly-functionalized innovative nicotinonitriles incorporating pyrene and/or fluorene moieties has been developed through the domino four-component condensation reaction of 1-(pyren-1-yl)ethanone/1-(9H-fluoren-2-yl)ethanone, numerous aromatic aldehydes, and 3-oxo-3-(pyren-1-yl)propanenitrile/3-(9H-fluoren-2-yl)-3-oxopropanenitrile and ammonium acetate in acetic acid as a reaction medium. The advantages of this approach are the short reaction time, excellent yield, and the easy experimental workup that affords substrate diversity and operative competence under metal-free reaction conditions for the formation of C–C and C–N bonds. The substituent effects on the photophysical property-based absorption and the emission of the synthesized compounds in dichloromethane have been well-investigated. Strong absorption quenching of around 100 nm was observed when substitution of the benzene ring at the C4-position of the pyridine moiety occurred with an electron-donating (–N(CH3)2) group. All of the newly synthesized nicotinonitrile derivatives showed strong blue-green fluorescence emission with maxima in the range between 420–630 nm. These highly pronounced emission spectra will help this family of compounds to find application in many areas and the field of materials science. A simplistic and highly effective protocol for the synthesis of a new class of poly-functionalized innovative nicotinonitriles incorporating pyrene and/or fluorene moieties has been developed through the domino four-component condensation reaction.![]()
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Affiliation(s)
- Essam M Hussein
- Chemistry Department, Faculty of Applied Science, Umm Al-Qura University 21955 Makkah Saudi Arabia .,Department of Chemistry, Faculty of Science, Assiut University 71516 Assiut Egypt
| | - Nizar El Guesmi
- Chemistry Department, Faculty of Applied Science, Umm Al-Qura University 21955 Makkah Saudi Arabia .,Département de Chimie, Faculté des Sciences de Monastir, Avenue de L'Environnement 5019 Monastir Tunisia
| | - Saleh A Ahmed
- Chemistry Department, Faculty of Applied Science, Umm Al-Qura University 21955 Makkah Saudi Arabia .,Department of Chemistry, Faculty of Science, Assiut University 71516 Assiut Egypt
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A facile approach for synthesis of thiazines-, thiazoles- and triazoles-annulated 6-styryl-2-thiouracil derivative. JOURNAL OF THE IRANIAN CHEMICAL SOCIETY 2019. [DOI: 10.1007/s13738-019-01760-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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