Estimates of genetic parameters for breech strike and potential indirect indicators in sheep

Genetic parameters of breech strike, neck wrinkles, dags and breech cover over the lifetime of crutched Merino ewes in a Mediterranean environment

Aims This study was undertaken to estimate the genetic parameters of breech strike and its indicator traits over the lifetime of crutched Merino ewes in a Mediterranean environment. Methods Breech strike records were collected on 3993 ewes over their lifetime where they were annually crutched. The ewes were scored at different times of the year for neck wrinkle, dag score and breech cover over their lifetime. A total of 13 577 breech strike records from birth up to 5 years of age were generated between 2006 and 2017. Face cover was only scored mid-year. Mixed model methodologies were used to estimate the genetic parameters of the different traits at different ages. Key results Breech strike was heritable (h2) and repeatable (t) on the observed scale (h2 = 0.07 ± 0.01; t = 0.13 ± 0.01), and as a binary trait on a logistic scale (h2 = 0.51 ± 0.10; t = 0.68 ± 0.10). Breech strike was genetically positively correlated across ages. Positive genetic correlations were found between breech strike and the indicator traits of neck wrinkle, face cover, breech cover and dags. Neck wrinkle and face cover, as well as breech cover and dag scored at different times of the year, were heritable and repeatable. Although high genetic correlations were found between different ages for neck wrinkle and post-shearing breech cover, these traits are not genetically the same traits at different ages. However, breech cover scored mid-year, before shearing and after shearing are genetically the same trait. The genetic relationship between dag at different ages is unclear as a moderate positive genetic correlation (rg = 0.25 ± 0.12) was found between hoggets and 2-year-old ewes, whereas a moderate negative correlation (rg = –0.30 ± 0.14) was found between 3- and 4-year-old ewes. The genetic correlations amongst the dag traits in older age groups were not significantly different from zero. Conclusions Breech strike and its indicator traits (i.e. neck wrinkle, breech cover, face cover and dags) were all heritable. Breech strike appears to be genetically strongly correlated across ages, however, the correlations had large standard errors. It was positively correlated with the indicator traits. Moderate to strong genetic correlations were found between ages for neck wrinkle and for breech cover. Dags, however, were poorly correlated across ages, indicating that dags are not genetically the same trait in mature ewes at different ages. Implications This study shows that selecting ewes for low breech strike, and for reduced neck wrinkle, lower breech cover and less dags will reduce breech strike in mature Merino ewes in future generations. However, as the phenotypic correlations were relatively low, culling ewes on these indicator traits will result in little gain in the current generation. It appears that dags at different ages is not genetically the same trait. Thus the benefit of selecting or culling ewes on dags will not be carried over to subsequent ages.

Diarrhoea associated with gastrointestinal parasites in grazing sheep

Diarrhoea is a common, widespread and frustrating reality for sheep enterprises in most sheep producing regions globally and of particular concern in Australia as the major risk factor for breech flystrike. Parasitic disease has long been recognised as an important factor in diarrhoea in sheep, particularly the gastrointestinal nematodes (Trichostrongylus and Teladorsagia species). This review focuses on the role of parasitic infections in causing diarrhoea in sheep, with emphasis on the epidemiology of diarrhoea outbreaks related to worms and opportunities to manage the risk of diarrhoea outbreaks in sheep related to parasitic infections. Parasitic nematodes damage the gastrointestinal tract via a complex relationship between direct impacts from worms, such as physical changes to the gut mucosa, and indirect effects largely associated with the host response. Diarrhoea associated with large worm burdens is most efficiently managed through integrated parasite management programs. Despite some limitations, measuring faecal worm egg counts remains a mainstay for assessing the contribution of worms to outbreaks of diarrhoea in sheep. Larval hypersensitivity scouring is emerging as a significant cause of worm-related diarrhoea in sheep without large adult worm burdens in some geographic locations. The syndrome describes a heightened inflammatory response to the ingestion of trichostrongylid infective larvae seen in the gut of sheep with diarrhoea, and is most effectively addressed through selecting sheep for low breech soiling ('dag scores'), as worm resistant sheep may show an increased propensity for diarrhoea, even with low rates of larval challenge. Importantly, dag should be considered as a separate trait to WEC in breeding indexes. Outbreaks of diarrhoea in young sheep are often multifactorial, and co-infections with nematodes and other infectious agents associated with diarrhoea are common. This presents challenges for the field investigation of diarrhoea in grazing sheep.

Are breech strike, dags and breech wrinkle genetically the same trait in crutched, uncrutched and mulesed Merino sheep?

Breech strike is caused by the infestation of maggots from Lucilia cuprina on the skin of susceptible sheep. Crutching and mulesing modify the potential expression of breech strike, because crutched and mulesed sheep have a lower risk of being struck than uncrutched sheep. The inheritance of and genetic correlations among breech strike from birth to hogget shearing, and dags (breech soiling) and skin wrinkles scored at yearling age were estimated in unmulesed and crutched, unmulesed and uncrutched, and in mulesed and uncrutched Merino sheep to determine whether these traits were genetically the same under these three husbandry systems. The heritability estimates of breech strike in uncrutched, crutched and mulesed sheep were very similar (0.11 ± 0.02, 0.09 ± 0.02 and 0.08 ± 0.05 respectively). Breech strike in uncrutched sheep is genetically strongly correlated with breech strike in crutched sheep (0.80 ± 0.16). The genetic correlation between breech strike in uncrutched and in mulesed sheep was high (0.98 ± 0.40), but the high standard error makes this estimate unreliable. Dags and wrinkles are genetically moderately to strongly correlated with breech strike, which confirms that they are indicator traits for breech strike. Dags in uncrutched sheep was genetically strongly correlated with dags in mulesed sheep (0.84 ± 0.11). Breech wrinkle in uncrutched and crutched sheep, and tail wrinkle in mulesed sheep were not genetically strongly correlated with each other, as the correlations varied between zero and 0.48 (±0.18). The key outcome from this study indicates that all breech strike, wrinkle and dag data in mulesed, crutched or uncrutched flocks may be used in future to estimate a breeding value directly for breech strike.

Heritabilities of IgA and IgE activities against Teladorsagia and Trichostrongylus L3 larval antigens correlated with traits for faecal worm egg count, health and productivity in Merino sheep

Low faecal worm-egg count (FEC) has been used as a phenotypic trait for breeding sheep for resistance to nematode infection. Application of this trait has resulted in a major reduction in worm-egg output in faeces, but in certain environments some of the resistant sheep develop what is believed to be a hypersensitivity-associated diarrhoea, resulting in soiling of the breech area (dags). To avoid breeding sheep with a propensity to scour, it, therefore, seems logical to combine selection for low FEC with selection for a trait based on the immune response to worm infection. We, therefore, investigated the relationships between immunoglobulin A (IgA) and immunoglobulin E (IgE) activities against L3 larval antigens of Teladorsagia circumcincta and Trichostrongylus colubriformis and measured their inheritance and their genetic relationships with FEC, dag traits and measures of production. Total plasma IgE concentrations were also determined and included in the study. We used 762 progeny from 23 Merino sires selected for resistance to helminths (the ‘Rylington Flock’) and to breech flystrike. Total plasma IgE and IgE activities against T. circumcincta were negatively correlated with liveweight, longissimus dorsi muscle depth, and fleece weight, but positively correlated with severity of dags, softer faeces and back-fat depth. The IgA activity against T. circumcincta was negatively correlated with liveweight and clean fleece weight, but positively correlated with back-fat depth and faecal consistency score. The IgA activity against T. colubriformis was not correlated with any measure, except the breeding value for dags around yearling age. The heritability for the IgA activity against T. circumcincta and T. colubriformis was 0.13 and 0.08 respectively. The heritability for both IgE activity against T. circumcincta and total plasma IgE concentration was 0.39. We conclude that it is feasible to combine FEC and dag traits with an immune trait (in this case, helminth-specific IgE activity and total plasma IgE concentration) and, thus, genetically select sheep for resistance to both helminths and diarrhoea. However, under natural worm-challenge conditions, blood sampling protocols need to developed, on the basis of animal age, season and environment, for optimum estimation of the immune trait and its relationships with other traits.

Impact of sire on the lifetime susceptibility of their progeny to breech strike in a Mediterranean environment

The progeny groups of resistant and susceptible sires to breech strike were compared for phenotypic differences in conformation and visual score traits recorded from birth to 5 years of age. The incidences of breech strike in the two most resistant sire progeny groups from birth to hogget shearing were 2.5% and 9.0% respectively, while in the two most susceptible sire progeny groups incidences were 94.5% and 102.9% (some sheep struck more than once) respectively. The susceptible groups consistently had a significantly higher strike rate than did the resistant groups over their lifetime. The adult lifetime breech-strike rates were 0.0% and 27.2% for resistant and susceptible sire groups respectively, despite pre-lambing crutchings. Statistically significant differences existed between the resistant and susceptible sire progeny groups for wrinkle and dags, although, in the present study, the average differences were small (0.2–0.6 unit score) for wrinkle, whereas a difference of 1.2 unit scores was found for yearling dag in spring. The very large differences in breech strike contrasts with the modest differences in the visually detectable breech indicator traits. This suggests that other unknown factors appear to contribute to larger differences than expected in breech strike between the sire progeny groups.

Genomic prediction and genome-wide association study for dagginess and host internal parasite resistance in New Zealand sheep

Background

Dagginess (faecal soiling of the perineum region) and host nematode parasite resistance are important animal welfare traits in New Zealand sheep. Genomic prediction (GP) estimates the genetic merit, as a molecular breeding value (mBV), for each trait based on many SNPs. The additional information the mBV provides (as determined by its accuracy) has led to its incorporation into breeding schemes. Some GP methods give SNP effects, which provide additional information to identify genome-wide associations (GWAS) for a trait of interest. Here we report results from a GP and GWAS study for dagginess and host nematode parasite resistance in a New Zealand sheep industry resource.

Results

Genomic prediction analysis was performed using 50K SNP chip data and parent average-removed, de-regressed BVs for five traits, from a resource of 8705 pedigree recorded animals. The five traits were dag score at three and eight months (DAG3, DAG8) and nematode faecal egg count in summer (FEC1), autumn (FEC2) and as an adult (AFEC). The resource consisted of Romney, Coopworth, Perendale, Texel and various breed crosses (designated: CompRCP, CompRCPT and CompCRP). The pure breeds, apart from Texel, plus CompRCP were used to develop the GP. The resulting SNP effects were used to identify genetic regions associated with dagginess and parasite resistance. Accuracies of the weighted correlation between mBV and true BV ranged between −0.07 (Texel) and 0.56 (Coopworth) for DAG3 and DAG8. For FEC1, FEC2 and AFEC accuracies ranged between −0.22 (CompRCPT) and 0.69 (Coopworth). The weighted average individual accuracy (calculated from theory) ranges were 0.13 (Texel) to 0.52 (Coopworth) and 0.11 (Texel) to 0.55 (Coopworth) respectively, for dagginess and parasite traits. There was one SNP for DAG8 that reached Bonferroni significance threshold (P < 1 × 10⁻⁶) on OAR15, the same two SNPs for each of the parasite traits (OAR26) and none for DAG3. A notable peak was also observed on OAR7 for all the parasite traits, however, it did not reach the Bonferroni significance threshold.

Conclusions

This study presents the first results of a GWAS on dagginess and faecal egg count traits in New Zealand sheep. The results suggest that there are quantitative trait loci on OAR 15 for dagginess and on OAR26 and seven for faecal egg count.

Electronic supplementary material

The online version of this article (doi:10.1186/s12864-015-2148-2) contains supplementary material, which is available to authorized users.