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Yang C, Yang Y, Zhao B, Gao E, Chen H, Li Y, Ma J, Wang J, Hu S, Song X, Chen Y, Yang G, Huo S, Luo W. Comparative analysis of differentially expressed genes and transcripts in the ovary of yak in estrus and anestrus. Anim Biotechnol 2024; 35:2427757. [PMID: 39558653 DOI: 10.1080/10495398.2024.2427757] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Accepted: 10/14/2024] [Indexed: 11/20/2024]
Abstract
Since most yaks have a long postpartum anestrus period, postpartum anestrus is the main factor affecting the reproductive efficiency of yaks. In this study, the third-generation sequencing technology was used to successfully screen differentially expressed genes (DEGs) and differentially expressed transcripts (DETs) in the ovarian tissues of yaks during estrus and anestrus. The functional references of DEGs and DETs were Gene Ontology, Kyoto Encyclopedia of Genes and Genomes, and Clusters of Orthologous Genes database. A total of 1149 DEGs and 2294 DETs were successfully identified. These DEGs and DETs were mainly related to biological processes such as "reproduction", "reproductive process", "metabolic process" and "rhythmic process". Kisspeptin-G protein-coupled receptor was found to be involved in regulating the reproductive cycle of yaks. DEGs and DETs were also related to gonadotropin-releasing hormone (GnRH) signaling pathways such as oocyte meiosis, estrogen signaling pathway, and progesterone-mediated induced oocyte maturation. The results showed that SIRT1, CSNK1A1, SLIT3, INHBA, INSL3, ZP2, Clock, BMP15, Bmal1, KISS1, and LCHGR regulate the postpartum quiescent state and the reproductive cycle of yaks. This study will help to further clarify the reproductive mechanism of yaks at the molecular level and provide certain assistance for the development of animal husbandry.
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Affiliation(s)
- Chongfa Yang
- College of Life Sciences and Engineering, Northwest Minzu University, Lanzhou, Gansu, China
| | - Yahua Yang
- College of Life Sciences and Engineering, Northwest Minzu University, Lanzhou, Gansu, China
| | - Bingzhu Zhao
- College of Life Sciences and Engineering, Northwest Minzu University, Lanzhou, Gansu, China
| | - Enyu Gao
- College of Life Sciences and Engineering, Northwest Minzu University, Lanzhou, Gansu, China
| | - Hao Chen
- College of Life Sciences and Engineering, Northwest Minzu University, Lanzhou, Gansu, China
| | - Yang Li
- College of Life Sciences and Engineering, Northwest Minzu University, Lanzhou, Gansu, China
| | - Junyuan Ma
- Gannan Prefecture Animal Husbandry Technology Service Center, Gannan, Gansu, China
| | - Jine Wang
- College of Life Sciences and Engineering, Northwest Minzu University, Lanzhou, Gansu, China
| | - Songming Hu
- College of Life Sciences and Engineering, Northwest Minzu University, Lanzhou, Gansu, China
| | - Xiaochen Song
- College of Life Sciences and Engineering, Northwest Minzu University, Lanzhou, Gansu, China
| | - Ying Chen
- College of Life Sciences and Engineering, Northwest Minzu University, Lanzhou, Gansu, China
| | - Gengsacairang Yang
- College of Life Sciences and Engineering, Northwest Minzu University, Lanzhou, Gansu, China
| | - Shengdong Huo
- College of Life Sciences and Engineering, Northwest Minzu University, Lanzhou, Gansu, China
| | - Wenxue Luo
- Tianzhu County Animal Husbandry Technology Extension Station, Wuwei, Gansu, China
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Zhao H, Huang Y, Shu S, Wang G, Fu C, Huang R, Zhang J, Su H, He Y, Lei C, Du L, Zhao J, Peng W. Transcriptomics and metabolomics of blood, urine and ovarian follicular fluid of yak at induced estrus stage. BMC Genomics 2024; 25:201. [PMID: 38383305 PMCID: PMC10882836 DOI: 10.1186/s12864-024-10079-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2023] [Accepted: 02/01/2024] [Indexed: 02/23/2024] Open
Abstract
To gain a deeper understanding of the metabolic differences within and outside the body, as well as changes in transcription levels following estrus in yaks, we conducted transcriptome and metabolome analyses on female yaks in both estrus and non-estrus states. The metabolome analysis identified 114, 13, and 91 distinct metabolites in urine, blood, and follicular fluid, respectively. The Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis highlighted an enrichment of pathways related to amino acid and lipid metabolism across all three body fluids. Our transcriptome analysis revealed 122 differentially expressed genes within microRNA (miRNA) and 640 within long non-coding RNA (lncRNA). Functional enrichment analysis of lncRNA and miRNA indicated their involvement in cell signaling, disease resistance, and immunity pathways. We constructed a regulatory network composed of 10 lncRNAs, 4 miRNAs, and 30 mRNAs, based on the targeted regulation relationships of the differentially expressed genes. In conclusion, the accumulation of metabolites such as amino acids, steroids, and organic acids, along with the expression changes of key genes like miR-129 during yak estrus, provide initial insights into the estrus mechanism in yaks.
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Affiliation(s)
- Huangqing Zhao
- Qinghai University, Xining, China
- Northwest A&F University, Yangling, Shaanxi, China
| | | | - Shi Shu
- Qinghai University, Xining, China
| | | | | | | | | | - Huawei Su
- China Agricultural University, Beijing, China
| | - Yang He
- China Agricultural University, Beijing, China
| | - Chuzhao Lei
- Northwest A&F University, Yangling, Shaanxi, China
| | - Lei Du
- Northwest A&F University, Yangling, Shaanxi, China
| | - Jiahao Zhao
- Northwest A&F University, Yangling, Shaanxi, China
| | - Wei Peng
- Qinghai University, Xining, China.
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