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Kusumawaty D, Augustine SMN, Aryani A, Effendi Y, Emran TB, Tallei TE. Configuration of gut bacterial community profile and their potential functionality in the digestive tract of the wild and cultivated Indonesian shortfin elver-phase eels ( Anguilla bicolor bicolor McClelland, 1844). 3 Biotech 2023; 13:153. [PMID: 37131968 PMCID: PMC10148933 DOI: 10.1007/s13205-023-03561-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Accepted: 04/15/2023] [Indexed: 05/04/2023] Open
Abstract
This study aimed to explore the bacteria present in the digestive tracts of wild and cultivated Indonesian shortfin eel during the elver phase. The eel has high export potential due to its vitamin and micronutrient content, but slow growth and vulnerability to collapse in farm conditions hinder its cultivation. The microbiota in the eel's digestive tract is crucial for its health, particularly during the elver phase. This study used Next Generation Sequencing to analyze the community structure and diversity of bacteria in the eels' digestive tracts, focusing on the V3-V4 regions of the 16S rRNA gene. Mothur software was used for data analysis and PAST v.3.26 was used to calculate alpha diversity. The results showed that Proteobacteria (64.18%) and Firmicutes (33.55%) were the predominant phyla in the digestive tract of cultivated eels, while Bacteroidetes (54.16%), Firmicutes (14.71%), and Fusobacteria (10.56%) were predominant in wild eels. The most prevalent genera in cultivated and wild elver were Plesiomonas and Cetobacterium, respectively. The microbiota in the digestive tract of cultivated eels was diverse despite uneven distribution. The KEGG database analysis revealed that the primary function of the microbiome was to facilitate the eel's absorption of nutrients by contributing significantly to the metabolism of carbohydrates and amino acids. This study's findings can aid in assessing eel health and improving eel farming conditions.
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Affiliation(s)
- Diah Kusumawaty
- Department of Biology, Faculty of Mathematics and Natural Sciences Education, Universitas Pendidikan Indonesia, Bandung, 40154 Indonesia
| | - Stella Melbournita Noor Augustine
- Department of Biology, Faculty of Mathematics and Natural Sciences Education, Universitas Pendidikan Indonesia, Bandung, 40154 Indonesia
| | - Any Aryani
- Department of Biology, Faculty of Mathematics and Natural Sciences Education, Universitas Pendidikan Indonesia, Bandung, 40154 Indonesia
| | - Yunus Effendi
- Department of Biology, Faculty of Science and Technology, Al-Azhar Indonesia University, Jakarta, 12110 Indonesia
| | - Talha Bin Emran
- Department of Pharmacy, BGC Trust University Bangladesh, Chittagong, 4381 Bangladesh
| | - Trina Ekawati Tallei
- Department of Biology, Faculty of Mathematics and Natural Sciences, Sam Ratulangi University, Manado, 95115 North Sulawesi Indonesia
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Paredes-Trujillo A, Mendoza-Carranza M. A systematic review and meta-analysis of the relationship between farm management, water quality and pathogen outbreaks in tilapia culture. JOURNAL OF FISH DISEASES 2022; 45:1529-1548. [PMID: 35830271 DOI: 10.1111/jfd.13679] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Revised: 06/15/2022] [Accepted: 06/16/2022] [Indexed: 06/15/2023]
Abstract
A systematic review and meta-analysis of on farm management and water quality as risk factors triggering pathogen outbreaks in tilapia culture is presented. A total of 121 papers from 28 countries, 37 devoted to management and 84 to water quality associated with the presence of pathogens in tilapia culture were analysed. Most of research has been made on ponds, focusing on bacteria and metazoans. Meta-analysis reveals the proportion of research showing statistical inferences between management (34%), water quality (38% for bacteria and 16.2% for metazoans) and pathogen outbreaks. The most cited parameters related to pathogens outbreaks were temperature (>30°C), dissolved oxygen (<5.0 mg/L), pH (<8.0) and ammonia (1.0 >mg/L) 65, 38, 32 and 34 papers, respectively. However, statistical inference was <20%. Meta-analysis reveals tendencies between high temperatures (30-35°C), low dissolved oxygen (<5 mg/L) and high NH3 (1-5 mg/L) with pathogen outbreaks. Despite the knowledge about the relationship between management and water quality as factors for pathogen effects, most information is descriptive and empirical. Future research on tilapia culture outbreaks should be focused on the effects of multiple stressors affecting tilapia pathogen outbreaks, thereby generating strategies to prevent diseases and financial losses.
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Affiliation(s)
- Amelia Paredes-Trujillo
- Laboratorio de Sanidad Acuícola, Instituto de Ecología, Pesquerías y Oceanográfia del Golfo de México - EPOMEX, Campus 6, Universidad Autónoma de Campeche, Campeche, Mexico
| | - Manuel Mendoza-Carranza
- Laboratorio de Ecología Trófica, Instituto de Ecología, Pesquerías y Oceanográfia del Golfo de México - EPOMEX, Campus 6, Universidad Autónoma de Campeche, Campeche, Mexico
- Departamento de Ciencias de la Sustentabilidad, El Colegio de la Frontera Sur-ECOSUR, Villahermosa, Mexico
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Rohani MF, Islam SM, Hossain MK, Ferdous Z, Siddik MA, Nuruzzaman M, Padeniya U, Brown C, Shahjahan M. Probiotics, prebiotics and synbiotics improved the functionality of aquafeed: Upgrading growth, reproduction, immunity and disease resistance in fish. FISH & SHELLFISH IMMUNOLOGY 2022; 120:569-589. [PMID: 34963656 DOI: 10.1016/j.fsi.2021.12.037] [Citation(s) in RCA: 47] [Impact Index Per Article: 23.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2021] [Revised: 11/30/2021] [Accepted: 12/22/2021] [Indexed: 06/14/2023]
Abstract
Aquaculture plays an increasingly significant role in improving the sustainability of global fish production. This sector has been intensified with the advent of new husbandry practices and the development of new technology. However, the increasing intensification and indiscriminate commercialized farming has enhanced the vulnerability of cultivated aquatic species to damage from pathogens. In efforts to confront these various diseases, frequent use of drugs, antibiotics, chemotherapeutics, and agents for sterilization have unintentionally added to the risk of transmission of pathogens and harmful chemical compounds to consumers. Some natural dietary supplements are believed to have the potential to offset this setback in aquaculture. Application of bio-friendly feed additives such as probiotics, prebiotics and synbiotics are becoming popular dietary supplements with the potential to not only improve growth performance, but in some cases can also enhance immune competence and the overall well-being of fish and crustaceans. The present review discusses and summarizes the effects of probiotics, prebiotics and synbiotics application on growth, stress mitigation, microbial composition of intestine, immune system and health condition of aquatic animals in association with existing constraints and future perspectives in aquaculture.
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Affiliation(s)
- Md Fazle Rohani
- Laboratory of Fish Ecophysiology, Department of Fisheries Management, Bangladesh Agricultural University, Mymensingh, 2202, Bangladesh; Department of Aquaculture, Bangladesh Agricultural University, Mymensingh, 2202, Bangladesh
| | - Sm Majharul Islam
- Laboratory of Fish Ecophysiology, Department of Fisheries Management, Bangladesh Agricultural University, Mymensingh, 2202, Bangladesh
| | - Md Kabir Hossain
- Laboratory of Fish Ecophysiology, Department of Fisheries Management, Bangladesh Agricultural University, Mymensingh, 2202, Bangladesh
| | - Zannatul Ferdous
- Laboratory of Fish Ecophysiology, Department of Fisheries Management, Bangladesh Agricultural University, Mymensingh, 2202, Bangladesh; Department of Aquaculture, Bangladesh Agricultural University, Mymensingh, 2202, Bangladesh
| | - Muhammad Ab Siddik
- Department of Fisheries Biology and Genetics, Patuakhali Science and Technology University, Patuakhali, Bangladesh
| | - Mohammad Nuruzzaman
- Krishi Gobeshona Foundation, BARC Complex, Farmgate, Dhaka, 1215, Bangladesh
| | - Uthpala Padeniya
- FAO-World Fisheries University Pilot Programme, Pukyong National University, 45 Yongso-ro, Nam-gu, Busan, 48513, South Korea
| | - Christopher Brown
- FAO-World Fisheries University Pilot Programme, Pukyong National University, 45 Yongso-ro, Nam-gu, Busan, 48513, South Korea
| | - Md Shahjahan
- Laboratory of Fish Ecophysiology, Department of Fisheries Management, Bangladesh Agricultural University, Mymensingh, 2202, Bangladesh.
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