1
|
Khalaf HS, Abdel-Aziz MS, Radwan MAA, Sediek AA. Synthesis, Biological Evaluation, and Molecular Docking Studies of Indole-Based Heterocyclic Scaffolds as Potential Antibacterial Agents. Chem Biodivers 2025; 22:e202402325. [PMID: 39433506 DOI: 10.1002/cbdv.202402325] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2024] [Revised: 10/14/2024] [Accepted: 10/21/2024] [Indexed: 10/23/2024]
Abstract
Indole-based heterocyclic scaffolds have become increasingly important in medicinal chemistry due to their notable pharmacological and biological properties. Their role in the discovery and development of innovative drugs for treating various diseases highlights their value. This study aimed to synthesize C3-indole derivatives linked to various heterocyclic scaffolds, including thiophenes, thiazolidine-4-ones, and 1,3,4-thiadiazoles, via the reaction of ethylthioacetanilide 2 with different α-haloketones.The structures of the target compounds were established using 1H and 13C nuclear magnetic resonance spectroscopy, mass spectrometry, infrared spectroscopy, and elemental analysis. The synthesized compounds were tested for antimicrobial activity against different microbes: S. aureus ATCC 6538 (Gram-positive bacteria), E. coli ATCC 25933 (Gram-negative bacteria), C. albicans ATCC 10231 (yeast), and fungi (A. niger NRRL-A326). Thiophene 6a, thiazolidine-4-one 8, and compound 10d exhibited the highest antimicrobial activities. The molecular docking study showed that compounds 2, 4, 6a, and 6c had good binding energy and favorable binding modes of interactions with the DNA gyrase B enzymes (PDB: 3 U2D) and (PDB: 1S14). The results showed that the NH group of the indole in compounds 2 and 4, together with the nitrile group (CN), played an important role in inhibiting DNA gyrase B of S. aureus, PDB: 3 U2D. Furthermore, the NH of the indole ring, together with the ethylamino group of compound 2, was crucial in inhibiting DNA gyrase B of E. coli, PDB: 1S14. These findings may encourage researchers to develop more effective C3-indole derivatives in their search for antimicrobial drugs.
Collapse
Affiliation(s)
- Hemat S Khalaf
- Department of Photochemistry, National Research Centre, Dokki, Cairo, 12622, Egypt
| | - Mohamed S Abdel-Aziz
- Microbial Chemistry Department, Biotechnology Research Institute, National Research Centre, Dokki, Giza, Egypt
| | - Mohamed A A Radwan
- Applied Organic Chemistry Department, National Research Centre, Dokki, 12622, Egypt
| | - Ashraf A Sediek
- Chemical Industries Institute, National Research Centre, Dokki, Giza, 12622, Egypt
| |
Collapse
|
2
|
Sharma S, Babu MA, Kumar R, Singh TG, Dwivedi AR, Ahmad G, Goel KK, Kumar B. A review on pyrimidine-based pharmacophore as a template for the development of hybrid drugs with anticancer potential. Mol Divers 2025:10.1007/s11030-025-11112-x. [PMID: 39937329 DOI: 10.1007/s11030-025-11112-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2024] [Accepted: 01/07/2025] [Indexed: 02/13/2025]
Abstract
The low efficacy and toxicity of traditional chemotherapy, led by drug resistance of targeted anticancer therapies, have mandated the exploration and development of anticancer molecules. In this league, hybrid drugs, owing to their peculiar multitargeted functionality and structural diversity, could serve as vital leads in this quest for drug discovery. They are plausibly found to offer added advantages considering the improved efficacy, low toxicity, and improved patient compliance. Among numerous heterocycles explored, pyrimidine derivatives epitomize as a valuable resource for the hybrid drug development due to their validated efficacy and versatility. The present review discusses the role of pyrimidine, a diversified pharmacophore in drug development and concepts of hybrid drugs. The study covers the recent advancements in pyrimidine-based hybrid pharmacophores. It delves further into the challenges in hybrid drug development and ongoing research in hybrid drug discovery. Furthermore, the challenges faced in developing hybrid molecules, such as their design and optimization complexities, bioavailability and pharmacokinetics issues, target identification and validation, and off-target effects, are discussed.
Collapse
Affiliation(s)
- Shivam Sharma
- Pharmaceutical Chemistry Division, Department of Pharmaceutical Sciences, Gurukul Kangri (Deemed to Be University), Haridwar, 249404, India
| | - M Arockia Babu
- Institute of Pharmaceutical Research, GLA University, Mathura, Uttar Pradesh, 281406, India
| | - Roshan Kumar
- Department of Microbiology, Central University of Punjab, VPO-Ghudda, Punjab, 151401, India
- Graphic Era (Deemed to Be University, Clement Town, Dehradun, 248002, India
| | - Thakur Gurjeet Singh
- Centre of Research Impact and Outcome, Chitkara University, Rajpura, Punjab, 140401, India
| | - Ashish Ranjan Dwivedi
- Department of Medicinal Chemistry, GITAM School of Pharmacy Hyderabad Campus GITAM University, Hyderabad, 502329, India
| | - Gazanfar Ahmad
- Prabha Harjilal College of Pharmacy and Paraclinical Sciences, Jammu, Jammu and Kashmir, India
| | - Kapil Kumar Goel
- Pharmaceutical Chemistry Division, Department of Pharmaceutical Sciences, Gurukul Kangri (Deemed to Be University), Haridwar, 249404, India.
| | - Bhupinder Kumar
- Department of Pharmaceutical Sciences, Hemvati Nandan Bahuguna Garhwal University (Central University, Dist. Garhwal, Srinagar, Uttarakhand, 246174, India.
| |
Collapse
|
3
|
Korkusuz E, Sert Y, Arslan S, Aydın H, Yıldırım İ, Demir Y, Gülçin İ, Koca İ. Synthesis and biological studies of pyrimidine derivatives targeting metabolic enzymes. Arch Pharm (Weinheim) 2024; 357:e2300634. [PMID: 38772694 DOI: 10.1002/ardp.202300634] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Revised: 03/08/2024] [Accepted: 04/04/2024] [Indexed: 05/23/2024]
Abstract
Novel synthesized pyrimidine derivatives were investigated against carbonic anhydrase isoenzymes I and II (hCA I and II), acetylcholinesterase (AChE), butyrylcholinesterase (BChE), α-glycosidase, and aldose reductase (AR) enzymes associated with some common diseases such as epilepsy, glaucoma, Alzheimer's disease, diabetes, and neuropathy. When the results were examined, novel synthesized pyrimidine derivatives were found to have effective inhibition abilities toward the metabolic enzymes. IC50 values and Ki values were calculated for each pyrimidine derivative and compared to positive controls. The synthesized novel pyrimidine derivatives exhibited Ki values in the range of 39.16 ± 7.70-144.62 ± 26.98 nM against hCA I, 18.21 ± 3.66-136.35 ± 21.48 nM toward hCA II, which is associated with different pathological and physiological processes, 33.15 ± 4.85-52.98 ± 19.86 nM on AChE, and 31.96 ± 8.24-69.57 ± 21.27 nM on BChE. Also, Ki values were determined in the range of 17.37 ± 1.11-253.88 ± 39.91 nM against α-glycosidase and 648.82 ± 53.74-1902.58 ± 98.90 nM toward AR enzymes. Within the scope of the study, the inhibition types of the novel synthesized pyrimidine derivatives were evaluated.
Collapse
Affiliation(s)
- Elif Korkusuz
- Mustafa Cikrikcioglu Vocational College, Kayseri University, Kayseri, Turkey
| | - Yusuf Sert
- Department of Physics, Faculty of Art & Sciences, Yozgat Bozok University, Yozgat, Turkey
| | - Seher Arslan
- Department of Chemistry, Erciyes University, Kayseri, Turkey
| | - Hava Aydın
- Department of Chemistry, Erciyes University, Kayseri, Turkey
| | - İsmail Yıldırım
- Department of Chemistry, Erciyes University, Kayseri, Turkey
| | - Yeliz Demir
- Nihat Delibalta Gole Vocational High School, Ardahan University, Ardahan, Turkey
| | - İlhami Gülçin
- Department of Chemistry, Faculty of Science, Atatürk University, Erzurum, Turkey
| | - İrfan Koca
- Department of Chemistry, Faculty of Art & Sciences, Yozgat Bozok University, Yozgat, Turkey
- Science and Technology Application and Research Center, Yozgat Bozok University, Yozgat, Turkey
| |
Collapse
|
4
|
Song J, Zhang S, Zhang B, Ma J. The anti-breast cancer therapeutic potential of 1,2,3-triazole-containing hybrids. Arch Pharm (Weinheim) 2024; 357:e2300641. [PMID: 38110853 DOI: 10.1002/ardp.202300641] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2023] [Revised: 11/22/2023] [Accepted: 11/24/2023] [Indexed: 12/20/2023]
Abstract
Breast cancer, as one of the most common invasive malignancies and the leading cause of cancer-related deaths in women globally, poses a significant challenge in the world health system. Substantial advances in diagnosis and treatment have significantly improved the survival rate of breast cancer patients, but the number of incidences and deaths of breast cancer are projected to increase by 40% and 50%, respectively, by 2040. Chemotherapy is one of the principal treatments for breast cancer therapy, but multidrug resistance and severe side effects remain the major obstacles to the success of treatment. Hence, there is a vital need to develop novel chemotherapeutic agents to combat this deadly disease. 1,2,3-Triazole, which can be effectively constructed by click chemistry, not only can serve as a linker to connect different anti-breast cancer pharmacophores but also is a valuable pharmacophore with anti-breast cancer potential and favorable properties such as hydrogen bonding, moderate dipole moment, and enhanced water solubility. Particularly, 1,2,3-triazole-containing hybrids have demonstrated promising in vitro and in vivo anti-breast cancer potential against both drug-sensitive and drug-resistant forms and possessed excellent selectivity by targeting different biological pathways associated with breast cancer, representing privileged scaffolds for the discovery of novel anti-breast cancer candidates. This review concentrates on the latest advancements of 1,2,3-triazole-containing hybrids with anti-breast cancer potential, including work published between 2020 and the present. The structure-activity relationships (SARs) and mechanisms of action are also reviewed to shed light on the development of more effective and multitargeted candidates.
Collapse
Affiliation(s)
- Juntao Song
- Department of Oncology and Hematology, Zibo 148 Hospital, Zibo, China
| | - Shuai Zhang
- Department of General Surgery, People's Hospital of Zhoucun District, Zibo, China
| | - Bo Zhang
- Emergency Department, People's Hospital of Zhoucun District, Zibo, China
| | - Junwei Ma
- Department of General Surgery, Zibo 148 Hospital, Zibo, China
| |
Collapse
|
5
|
Ay E. Synthesis of new 1,2,3-triazolo-nucleoside analogues with 2-propargylamino pyrimidines via click reactions. NUCLEOSIDES, NUCLEOTIDES & NUCLEIC ACIDS 2022; 42:191-205. [PMID: 36047982 DOI: 10.1080/15257770.2022.2118317] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
Abstract
In this study, it was reported that twelve nucleoside analogues were synthesized by click reactions. The reactions were carried out between the azide derivatives of D-glucopyranose, D-galactopyranose, D-ribofuranose and 2-propargylamino pyrimidine derivatives (5 and 7) that are synthesized via a different route for the first time. In the first step, N-propargyl guanidine was obtained with the reaction of 1H-pyrazole-1-carboxamidine hydrochloride and propargyl amine, then condensation of N-propargyl guanidine and β-diketone (4 and 6) resulted in 2-propargylamino pyrimidines (5 and 7) for the first time in good yields (85%). Finally, click reactions were performed with azidosugars (8a-8f) and 2-propargylamino pyrimidine derivatives and produced twelve new nucleoside analogues in good yields. (9a-9f, 10a-10f, 65-73% yields). The chemical structures of the new derivatives were elucidated spectroscopic techniques, such as FT-IR, 1H NMR, 19F NMR, 13C NMR and TOF-ESI-MS.
Collapse
Affiliation(s)
- Emriye Ay
- Giresun University, Department of Food Technology, Şebinkarahisar School of Applied Sciences, Giresun, Türkiye.,Manisa Celal Bayar University, Department of Tobacco Technology Engineering, Akhisar, Manisa, Türkiye
| |
Collapse
|
6
|
Radwan MA, Al Rugaie O, Al Abdulmonem W, Awad H, Zayed E. Molecular Docking Studies, Antiproliferative Evaluation, and Synthesis of 7-(1H-Indol-3-yl)pyrido[2,3-d]pyrimidine Derivatives. RUSSIAN JOURNAL OF BIOORGANIC CHEMISTRY 2022. [DOI: 10.1134/s1068162022040161] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
7
|
Chakraborty A, Jaiswal C, Hassan A, Kumar S, Singh K, Mandal BB, Das N. Tunable and improved antiproliferative activity of Pt (II)–based organometallics bearing alkynyls and 1,2,3‐triazole moieties. Appl Organomet Chem 2022. [DOI: 10.1002/aoc.6711] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Arnab Chakraborty
- Department of Chemistry Indian Institute of Technology Patna Bihta Bihar India
| | - Chitra Jaiswal
- Department of Biosciences and Bioengineering Indian Institute of Technology Guwahati Guwahati Assam India
| | - Atikur Hassan
- Department of Chemistry Indian Institute of Technology Patna Bihta Bihar India
| | - Saurabh Kumar
- Department of Chemistry Indian Institute of Technology Patna Bihta Bihar India
| | - Khushwant Singh
- Department of Chemistry Indian Institute of Technology Patna Bihta Bihar India
| | - Biman B. Mandal
- Department of Biosciences and Bioengineering Indian Institute of Technology Guwahati Guwahati Assam India
- Centre for Nanotechnology Indian Institute of Technology Guwahati Guwahati Assam India
- School of Health Science and Technology Indian Institute of Technology Guwahati Guwahati Assam India
| | - Neeladri Das
- Department of Chemistry Indian Institute of Technology Patna Bihta Bihar India
| |
Collapse
|
8
|
Albratty M, Ahmad Alhazmi H. Novel pyridine and pyrimidine derivatives as promising anticancer agents: A review. ARAB J CHEM 2022. [DOI: 10.1016/j.arabjc.2022.103846] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
|
9
|
Rahman AAHA, Shaban AKF, Nassar IF, Yousif MNM, El-Kady DS, Awad HM, El-Sayed WA. Synthesis and Anticancer Activity of New Pyrimidine and Oxadiazole Acyclic Nucleoside Analogs and Thiazolopyrimidine Derivatives. RUSS J GEN CHEM+ 2021. [DOI: 10.1134/s1070363221100261] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
10
|
Alam MM. 1,2,3-Triazole hybrids as anticancer agents: A review. Arch Pharm (Weinheim) 2021; 355:e2100158. [PMID: 34559414 DOI: 10.1002/ardp.202100158] [Citation(s) in RCA: 106] [Impact Index Per Article: 26.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2021] [Revised: 08/03/2021] [Accepted: 09/04/2021] [Indexed: 12/25/2022]
Abstract
Despite the advancements in the development of anticancer agents, more effective and safer anticancer drugs still need to be developed as the current agents cause unwanted side effects and many patients have become drug resistant. 1,2,3-Triazoles, due to their remarkable biological potential, have received considerable attention in drug discovery for the development of anticancer agents. The present review article presents an overview of the recent advances in 1,2,3-triazole hybrids with anticancer potential over the last 2 years, their chemical structures, structure-activity relationships, and mechanisms of action, as well as insights into the docking studies.
Collapse
Affiliation(s)
- Mohammad Mahboob Alam
- Department of Chemistry, Faculty of Science, Albaha University, Albaha, Kingdom of Saudi Arabia
| |
Collapse
|
11
|
Elasasy MEA, Elnaggar DH, Hafez NAA, Azab ME, Amr AE, Omran MM, Mohamed AM. Synthesis and Antiproliferative Activity of Novel Hydrazono Thiazolidene and Thiazole Derivatives Bearing Rhodanine Moiety. RUSS J GEN CHEM+ 2021. [DOI: 10.1134/s1070363221050236] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
12
|
Ngoc Toan V, Dinh Thanh N, Minh Tri N. 1,3,4-Thiadiazoline−coumarin hybrid compounds containing D-glucose/D-galactose moieties: Synthesis and evaluation of their antiproliferative activity. ARAB J CHEM 2021. [DOI: 10.1016/j.arabjc.2021.103053] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
|
13
|
Farooq S, Ngaini Z. One‐pot
and
two‐pot
methods for chalcone derived pyrimidines synthesis and applications. J Heterocycl Chem 2021. [DOI: 10.1002/jhet.4226] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Saba Farooq
- Faculty of Resource Science and Technology Universiti Malaysia Sarawak Kota Samarahan Malaysia
| | - Zainab Ngaini
- Faculty of Resource Science and Technology Universiti Malaysia Sarawak Kota Samarahan Malaysia
| |
Collapse
|