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Voronezhskaya V, Volkova P, Bitarishvili S, Shesterikova E, Podlutskii M, Clement G, Meyer C, Duarte GT, Kudin M, Garbaruk D, Turchin L, Kazakova E. Multi-Omics Analysis of Vicia cracca Responses to Chronic Radiation Exposure in the Chernobyl Exclusion Zone. PLANTS (BASEL, SWITZERLAND) 2023; 12:2318. [PMID: 37375943 DOI: 10.3390/plants12122318] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2023] [Revised: 06/09/2023] [Accepted: 06/13/2023] [Indexed: 06/29/2023]
Abstract
Our understanding of the long-term consequences of chronic ionising radiation for living organisms remains scarce. Modern molecular biology techniques are helpful tools for researching pollutant effects on biota. To reveal the molecular phenotype of plants growing under chronic radiation exposure, we sampled Vicia cracca L. plants in the Chernobyl exclusion zone and areas with normal radiation backgrounds. We performed a detailed analysis of soil and gene expression patterns and conducted coordinated multi-omics analyses of plant samples, including transcriptomics, proteomics, and metabolomics. Plants growing under chronic radiation exposure showed complex and multidirectional biological effects, including significant alterations in the metabolism and gene expression patterns of irradiated plants. We revealed profound changes in carbon metabolism, nitrogen reallocation, and photosynthesis. These plants showed signs of DNA damage, redox imbalance, and stress responses. The upregulation of histones, chaperones, peroxidases, and secondary metabolism was noted.
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Affiliation(s)
| | | | | | | | | | - Gilles Clement
- Institute Jean-Pierre Bourgin (IJPB), INRAE, AgroParisTech, Université Paris-Saclay, 78000 Versailles, France
| | - Christian Meyer
- Institute Jean-Pierre Bourgin (IJPB), INRAE, AgroParisTech, Université Paris-Saclay, 78000 Versailles, France
| | | | - Maksim Kudin
- Polesye State Radiation-Ecological Reserve, 247618 Khoiniki, Belarus
| | - Dmitrii Garbaruk
- Polesye State Radiation-Ecological Reserve, 247618 Khoiniki, Belarus
| | - Larisa Turchin
- Polesye State Radiation-Ecological Reserve, 247618 Khoiniki, Belarus
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Swarnalakshmi K, Yadav V, Tyagi D, Dhar DW, Kannepalli A, Kumar S. Significance of Plant Growth Promoting Rhizobacteria in Grain Legumes: Growth Promotion and Crop Production. PLANTS 2020; 9:plants9111596. [PMID: 33213067 PMCID: PMC7698556 DOI: 10.3390/plants9111596] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/23/2020] [Revised: 10/24/2020] [Accepted: 10/28/2020] [Indexed: 02/01/2023]
Abstract
Grain legumes are an important component of sustainable agri-food systems. They establish symbiotic association with rhizobia and arbuscular mycorrhizal fungi, thus reducing the use of chemical fertilizers. Several other free-living microbial communities (PGPR—plant growth promoting rhizobacteria) residing in the soil-root interface are also known to influence biogeochemical cycles and improve legume productivity. The growth and function of these microorganisms are affected by root exudate molecules secreted in the rhizosphere region. PGPRs produce the chemicals which stimulate growth and functions of leguminous crops at different growth stages. They promote plant growth by nitrogen fixation, solubilization as well as mineralization of phosphorus, and production of phytohormone(s). The co-inoculation of PGPRs along with rhizobia has shown to enhance nodulation and symbiotic interaction. The recent molecular tools are helpful to understand and predict the establishment and function of PGPRs and plant response. In this review, we provide an overview of various growth promoting mechanisms of PGPR inoculations in the production of leguminous crops.
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Affiliation(s)
| | - Vandana Yadav
- Division of Microbiology, ICAR-Indian Agricultural Research Institute (IARI), New Delhi 110012, India
| | - Deepti Tyagi
- Division of Microbiology, ICAR-Indian Agricultural Research Institute (IARI), New Delhi 110012, India
| | - Dolly Wattal Dhar
- Division of Microbiology, ICAR-Indian Agricultural Research Institute (IARI), New Delhi 110012, India
| | - Annapurna Kannepalli
- Division of Microbiology, ICAR-Indian Agricultural Research Institute (IARI), New Delhi 110012, India
| | - Shiv Kumar
- International Centre for Agricultural Research in the Dry Areas (ICARDA), Rabat 10112, Morocco
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Serteyn L, Quaghebeur C, Ongena M, Cabrera N, Barrera A, Molina-Montenegro MA, Francis F, Ramírez CC. Induced Systemic Resistance by a Plant Growth-Promoting Rhizobacterium Impacts Development and Feeding Behavior of Aphids. INSECTS 2020; 11:insects11040234. [PMID: 32276327 PMCID: PMC7240704 DOI: 10.3390/insects11040234] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/23/2020] [Revised: 04/03/2020] [Accepted: 04/06/2020] [Indexed: 02/04/2023]
Abstract
The effects of microorganisms on plant-insect interactions have usually been underestimated. While plant growth-promoting rhizobacteria (PGPR) are known to induce plant defenses, endosymbiotic bacteria hosted by herbivorous insects are often beneficial to the host. Here, we aimed to assess whether PGPR-induced defenses in broad bean plants impact the pea aphid, depending on its genotype and the presence of endosymbionts. We estimated aphid reproduction, quantified defense- and growth-related phytohormones by GC-MS, and measured different plant growth and physiology parameters, after PGPR treatment. In addition, we recorded the feeding behavior of aphids by electropenetrography. We found that the PGPR treatment of broad bean plants reduced the reproduction of one of the pea aphid clones. We highlighted a phenomenon of PGPR-induced plant defense priming, but no noticeable plant growth promotion. The main changes in aphid probing behavior were related to salivation events into phloem sieve elements. We suggest that the endosymbiont Hamiltonella defensa played a key role in plant-insect interactions, possibly helping aphids to counteract plant-induced resistance and allowing them to develop normally on PGPR-treated plants. Our results imply that plant- and aphid-associated microorganisms add greater complexity to the outcomes of aphid-plant interactions.
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Affiliation(s)
- Laurent Serteyn
- Functional and Evolutionary Entomology, Gembloux Agro-Bio Tech, University of Liege, Passage des Déportés 2, B-5030 Gembloux, Belgium; (C.Q.); (F.F.)
- Correspondence: (L.S.); (C.C.R.); Tel.: +3-281-622-235 (L.S.); +5-671-220-0289 (C.C.R.)
| | - Céleste Quaghebeur
- Functional and Evolutionary Entomology, Gembloux Agro-Bio Tech, University of Liege, Passage des Déportés 2, B-5030 Gembloux, Belgium; (C.Q.); (F.F.)
| | - Marc Ongena
- Microbial Processes and Interactions Research Unit, Gembloux Agro-Bio Tech, University of Liege, B-5030 Gembloux, Belgium;
| | - Nuri Cabrera
- Laboratorio Interacciones Insecto-Planta, Instituto de Ciencias Biológicas, Universidad de Talca, 1141 Talca, Chile;
| | - Andrea Barrera
- Laboratorio de Ecología Vegetal, Instituto de Ciencias Biológicas, Universidad de Talca, 1141 Talca, Chile; (A.B.); (M.A.M.-M.)
| | - Marco A. Molina-Montenegro
- Laboratorio de Ecología Vegetal, Instituto de Ciencias Biológicas, Universidad de Talca, 1141 Talca, Chile; (A.B.); (M.A.M.-M.)
- Centro de Estudios Avanzados en Zonas Áridas (CEAZA), Universidad Católica del Norte, 1281 Coquimbo, Chile
| | - Frédéric Francis
- Functional and Evolutionary Entomology, Gembloux Agro-Bio Tech, University of Liege, Passage des Déportés 2, B-5030 Gembloux, Belgium; (C.Q.); (F.F.)
| | - Claudio C. Ramírez
- Laboratorio Interacciones Insecto-Planta, Instituto de Ciencias Biológicas, Universidad de Talca, 1141 Talca, Chile;
- Correspondence: (L.S.); (C.C.R.); Tel.: +3-281-622-235 (L.S.); +5-671-220-0289 (C.C.R.)
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Ibañez S, Medina MI, Agostini E. Vicia: a green bridge to clean up polluted environments. Appl Microbiol Biotechnol 2019; 104:13-21. [PMID: 31735983 DOI: 10.1007/s00253-019-10222-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2019] [Revised: 10/21/2019] [Accepted: 10/27/2019] [Indexed: 01/06/2023]
Abstract
Vicia species, commonly known as vetches, include legume plants which nowadays can be found in many countries around the world. Their use to improve soil health and productivity is crucial in management schemes that make sustainable agriculture possible, but they can also play a part in the phytoremediation of polluted environments. Furthermore, they harbor a large community of rhizospheric microorganisms, such as biodegradative bacteria and plant growth-promoting rhizobacteria, which can help to increase phytoremediation efficiency. Their mutualistic association with Rhizobium sp. has also been proposed as an attractive bioremediation tool. Thus, Vicia species could make a remarkable difference in the ecological restoration of polluted soils, thanks to their dual role as cover crops and phytoremediator plants. This mini-review discusses recent advances in the use of Vicia. Challenges and opportunities connect with the application of these species will also be revised, as well as aspects that remain to be explored.
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Affiliation(s)
- Sabrina Ibañez
- Departamento de Biología Molecular, FCEFQyN, Universidad Nacional de Río Cuarto, Ruta Nacional 36 Km 601, 5800, Río Cuarto, Córdoba, Argentina.,CONICET, Instituto de Biotecnología Ambiental y Salud (INBIAS), UNRC, Río Cuarto, Córdoba, Argentina
| | - María I Medina
- Departamento de Biología Molecular, FCEFQyN, Universidad Nacional de Río Cuarto, Ruta Nacional 36 Km 601, 5800, Río Cuarto, Córdoba, Argentina.,CONICET, Instituto de Biotecnología Ambiental y Salud (INBIAS), UNRC, Río Cuarto, Córdoba, Argentina
| | - Elizabeth Agostini
- Departamento de Biología Molecular, FCEFQyN, Universidad Nacional de Río Cuarto, Ruta Nacional 36 Km 601, 5800, Río Cuarto, Córdoba, Argentina. .,CONICET, Instituto de Biotecnología Ambiental y Salud (INBIAS), UNRC, Río Cuarto, Córdoba, Argentina.
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Igiehon NO, Babalola OO. Rhizosphere Microbiome Modulators: Contributions of Nitrogen Fixing Bacteria towards Sustainable Agriculture. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2018; 15:ijerph15040574. [PMID: 29570619 PMCID: PMC5923616 DOI: 10.3390/ijerph15040574] [Citation(s) in RCA: 105] [Impact Index Per Article: 17.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/25/2018] [Revised: 03/03/2018] [Accepted: 03/19/2018] [Indexed: 02/05/2023]
Abstract
Rhizosphere microbiome which has been shown to enhance plant growth and yield are modulated or influenced by a few environmental factors such as soil type, plant cultivar, climate change and anthropogenic activities. In particular, anthropogenic activity, such as the use of nitrogen-based chemical fertilizers, is associated with environmental destruction and this calls for a more ecofriendly strategy to increase nitrogen levels in agricultural land. This feat is attainable by harnessing nitrogen-fixing endophytic and free-living rhizobacteria. Rhizobium, Pseudomonas, Azospirillum and Bacillus, have been found to have positive impacts on crops by enhancing both above and belowground biomass and could therefore play positive roles in achieving sustainable agriculture outcomes. Thus, it is necessary to study this rhizosphere microbiome with more sophisticated culture-independent techniques such as next generation sequencing (NGS) with the prospect of discovering novel bacteria with plant growth promoting traits. This review is therefore aimed at discussing factors that can modulate rhizosphere microbiome with focus on the contributions of nitrogen fixing bacteria towards sustainable agricultural development and the techniques that can be used for their study.
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Affiliation(s)
- Nicholas Ozede Igiehon
- Food Security and Safety Niche, Faculty of Natural and Agricultural Science, Private Mail Bag X2046, North West University, Mmabatho 2735, South Africa.
| | - Olubukola Oluranti Babalola
- Food Security and Safety Niche, Faculty of Natural and Agricultural Science, Private Mail Bag X2046, North West University, Mmabatho 2735, South Africa.
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Oliveira V, Gomes NCM, Almeida A, Silva AMS, Silva H, Cunha Â. Microbe-assisted phytoremediation of hydrocarbons in estuarine environments. MICROBIAL ECOLOGY 2015; 69:1-12. [PMID: 25001506 DOI: 10.1007/s00248-014-0455-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2014] [Accepted: 06/23/2014] [Indexed: 06/03/2023]
Abstract
Estuaries are sinks for various anthropogenic contaminants, such as petroleum hydrocarbons, giving rise to significant environmental concern. The demand for organisms and processes capable of degrading pollutants in a clean, effective, and less expensive process is of great importance. Phytoremedition approaches involving plant/bacteria interactions have been explored as an alternative, and halophyte vegetation has potential for use in phytoremedition of hydrocarbon contamination. Studies with plant species potentially suitable for microbe-assisted phytoremediation are widely represented in scientific literature. However, the in-depth understanding of the biological processes associated with the re-introduction of indigenous bacteria and plants and their performance in the degradation of hydrocarbons is still the limiting step for the application of these bioremediation solutions in a field context. The intent of the present review is to summarize the sources and effects of hydrocarbon contamination in estuarine environments, the strategies currently available for bioremediation (potential and limitations), and the perspectives of the use of halophyte plants in microbe-assisted phytoremediation approaches.
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Affiliation(s)
- Vanessa Oliveira
- Centre for Environmental and Marine Studies (CESAM) and Department of Biology, University of Aveiro, Campus Universitário de Santiago, 3810-193, Aveiro, Portugal
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Zhang X, Chen L, Liu X, Wang C, Chen X, Xu G, Deng K. Synergic degradation of diesel by Scirpus triqueter and its endophytic bacteria. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2014; 21:8198-8205. [PMID: 24920429 DOI: 10.1007/s11356-014-2807-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2013] [Accepted: 03/17/2014] [Indexed: 06/03/2023]
Abstract
The endophytic bacterium isolated from Scirpus triqueter was proved to be an oil-degraded bacterium. A pot experiment was conducted to investigate the removal ratio of diesel under the combined effect of oil-degraded microorganism (Pseudomonas sp. J4AJ) and S. triqueter. The effect of diesel on plant growth parameters, soil enzymes and microbial community was assessed after 60 days. The results showed that the soils which were planted with S. triqueter and inoculated with J4AJ displayed the highest removal ratio (54.51 ± 0.15%) after 60-day experiment. However, the removal ratio of J4AJ-treated soils was 38.97 ± 0.55%. Diesel was toxic to S. triqueter, as evidenced by growth inhibition during the experimental period. However, the plant height and stem biomass in the soils inoculated with J4AJ significantly increased. The combined effect of S. triqueter and J4AJ improved the enzyme activities of the catalase and dehydrogenase in the contaminated soil. The diversity index in soils under the effect of S. triqueter combined with J4AJ was lower than that of the other soil samples. The principal analysis of phospholipid fatty acid signatures revealed that the combined effect of S. triqueter and J4AJ increased the differences of soil microbial community structure with the other treatments.
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Affiliation(s)
- Xinying Zhang
- College of Environment and Chemical Engineering, Shanghai University, 200444, Shanghai, China
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Abd-Alla MH, Bagy MK, El-enany AWES, Bashandy SR. Activation of Rhizobium tibeticum with flavonoids enhances nodulation, nitrogen fixation, and growth of fenugreek (Trigonella foenum-graecum L.) grown in cobalt-polluted soil. ARCHIVES OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY 2014; 66:303-315. [PMID: 24366585 DOI: 10.1007/s00244-013-9980-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2013] [Accepted: 12/03/2013] [Indexed: 06/03/2023]
Abstract
The goal of this study was to investigate the response of activation of Rhizobium tibeticum with mixture of hesperetin and apigenin to improve growth, nodulation, and nitrogen fixation of fenugreek grown under cobalt (Co) stress. The current study showed that high concentrations of Co-induced noxious effects on rhizobial growth, nod gene expression, nodulation, phenylalanine ammonia-lyase (PAL) and glutamine synthetase (GS) activities, total flavonoid content, and nitrogen fixation. Addition of a mixture of hesperetin and apigenin to growth medium supplemented with different concentrations of Co significantly increased bacterial growth. PAL activity of roots grown hydroponically at 100 mg kg(-1) Co and inoculated with induced R. tibeticum was significantly increased compared with plants receiving uninduced R. tibeticum. Total flavonoid content of root exudates of plants inoculated with activated R. tibeticum was significantly increased compared with inoculated plants with unactivated R. tibeticum or uninoculated plants at variant Co dosages. Application of 50 mg kg(-1) Co significantly increased nodulation, GS, nitrogenase activity, and biomass of plants inoculated with either or uninduced R. tibeticum. The total number and fresh mass of nodules, nitrogenase activity, and biomass of plants inoculated with induced cells grown in soil treated with 100 and 200 mg kg(-1) Co were significantly increased compared with plants inoculated with uninduced cells. Induced R. tibeticum with flavonoids significantly alleviates the adverse effect of Co on nod gene expression and therefore enhances nitrogen fixation. Induction of R. tibeticum with compatible flavonoids could be of practical importance in augmenting growth and nitrogen fixation of fenugreek grown in a Co-contaminated agroecosystem.
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Affiliation(s)
- Mohamed Hemida Abd-Alla
- Botany and Microbiology Department, Faculty of Science, Assiut University, Assuit, 71516, Egypt
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Kabra AN, Khandare RV, Govindwar SP. Development of a bioreactor for remediation of textile effluent and dye mixture: a plant-bacterial synergistic strategy. WATER RESEARCH 2013; 47:1035-48. [PMID: 23245543 DOI: 10.1016/j.watres.2012.11.007] [Citation(s) in RCA: 71] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2012] [Revised: 10/25/2012] [Accepted: 11/02/2012] [Indexed: 05/06/2023]
Abstract
The objective of the present work was to develop a plant-bacterial synergistic system for efficient treatment of the textile effluents. Decolorization of the dye Scarlet RR and a dye mixture was studied under in vitro conditions using Glandularia pulchella (Sweet) Tronc., Pseudomonas monteilii ANK and their consortium. Four reactors viz. soil, bacteria, plant and consortium were developed that were subjected for treatment of textile effluents and dye mixture. Under in vitro conditions G. pulchella and P. monteilii showed decolorization of the dye Scarlet RR (SRR) by 97 and 84%, within 72 and 96 h respectively, while their consortium showed 100% decolorization of the dye within 48 h. In case of dye mixture G. pulchella, P. monteilii and consortium-PG showed an ADMI removal of 78, 67 and 92% respectively within 96 h. During decolorization of SRR G. pulchella showed induction in the activities of enzymes lignin peroxidase and DCIP reductase while P. monteilii showed induction of laccase, DCIP reductase and tyrosinase, indicating their involvement in the dye metabolism. High Performance Liquid Chromatography (HPLC), Fourier Transform Infra Red Spectroscopy (FTIR) and High Performance Thin Layer Chromatography (HPTLC) confirmed the biotransformation of SRR and dye mixture into different metabolites. Soil, bacteria, plant and consortium reactors performed an ADMI removal of 42, 46, 62 and 93% in the first decolorization cycle while it showed an average ADMI removal of 21, 27, 59 and 93% in the next three (second, third and fourth) decolorization cycles respectively for the dye mixture within 24 h. Consortium reactor showed an average ADMI removal of 95% within 48 and 60 h for textile effluents A and B respectively for three decolorization cycles, while it showed an average TOC, COD and BOD removal of 74, 70 and 70%, 66, 72 and 67%, and 70, 70 and 66% for three decolorization cycles of the dye mixture (second, third and fourth decolorization cycles), effluent A and effluent B respectively. Degradation of the textile effluents and dye mixture into different metabolites by the consortium reactor was confirmed using HPLC and FTIR. Phytotoxicity studies revealed the non-toxic nature of the metabolites of degradation of dye mixture, effluents A and B by consortium reactor. The developed consortial reactor system performed efficient treatment of the dye mixture and textile effluents, and can be used for treating large amounts of textile effluents when implemented as a constructed wetland by proper engineering approach.
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Affiliation(s)
- Akhil N Kabra
- Department of Biotechnology, Shivaji University, Kolhapur, India
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Ali N, Sorkhoh N, Salamah S, Eliyas M, Radwan S. The potential of epiphytic hydrocarbon-utilizing bacteria on legume leaves for attenuation of atmospheric hydrocarbon pollutants. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2012; 93:113-20. [PMID: 22054577 DOI: 10.1016/j.jenvman.2011.08.014] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2011] [Revised: 08/16/2011] [Accepted: 08/17/2011] [Indexed: 05/31/2023]
Abstract
The leaves of two legumes, peas and beans, harbored on their surfaces up to 9×10⁷ cells g⁻¹ of oil-utilizing bacteria. Less numbers, up to 5×10⁵ cells g⁻¹ inhabited leaves of two nonlegume crops, namely tomato and sunflower. Older leaves accommodated more of such bacteria than younger ones. Plants raised in oily environments were colonized by much more oil-utilizing bacteria than those raised in pristine (oil-free) environments. Similar numbers were counted on the same media in which nitrogen salt was deleted, indicating that most phyllospheric bacteria were probably diazotrophic. Most dominant were Microbacterium spp. followed by Rhodococcus spp., Citrobacter freundii, in addition to several other minor species. The pure bacterial isolates could utilize leaf tissue hydrocarbons, and consume considerable proportions of crude oil, phenanthrene (an aromatic hydrocarbon) and n-octadecane (an alkane) in batch cultures. Bacterial consortia on fresh (but not on previously autoclaved) leaves of peas and beans could also consume substantial proportions of the surrounding volatile oil hydrocarbons in closed microcosms. It was concluded that phytoremediation through phyllosphere technology could be useful in remediating atmospheric hydrocarbon pollutants.
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Affiliation(s)
- Nida Ali
- Department of Biological Sciences, Kuwait University, Safat 13060, Kuwait
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11
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Characterization of a versatile rhizospheric organism from cucumber identified asOchrobactrum haematophilum. J Basic Microbiol 2011; 52:232-44. [DOI: 10.1002/jobm.201000491] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2010] [Accepted: 04/26/2011] [Indexed: 11/07/2022]
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12
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Beneficial bacteria of agricultural importance. Biotechnol Lett 2010; 32:1559-70. [DOI: 10.1007/s10529-010-0347-0] [Citation(s) in RCA: 448] [Impact Index Per Article: 32.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2010] [Accepted: 06/28/2010] [Indexed: 01/07/2023]
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13
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Glick BR. Using soil bacteria to facilitate phytoremediation. Biotechnol Adv 2010; 28:367-74. [PMID: 20149857 DOI: 10.1016/j.biotechadv.2010.02.001] [Citation(s) in RCA: 527] [Impact Index Per Article: 37.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2009] [Revised: 02/02/2010] [Accepted: 02/02/2010] [Indexed: 10/19/2022]
Abstract
In the past twenty years or so, researchers have endeavored to utilize plants to facilitate the removal of both organic and inorganic contaminants from the environment, especially from soil. These phytoremediation approaches have come a long way in a short time. However, the majority of this work has been done under more controlled laboratory conditions and not in the field. As an adjunct to various phytoremediation strategies and as part of an effort to make this technology more efficacious, a number of scientists have begun to explore the possibility of using various soil bacteria together with plants. These bacteria include biodegradative bacteria, plant growth-promoting bacteria and bacteria that facilitate phytoremediation by other means. An overview of bacterially assisted phytoremediation is provided here for both organic and metallic contaminants, with the intent of providing some insight into how these bacteria aid phytoremediation so that future field studies might be facilitated.
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Affiliation(s)
- Bernard R Glick
- Department of Biology, University of Waterloo, 200 University Avenue West, Waterloo, Ontario, Canada
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15
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Microbiology of Oil-Contaminated Desert Soils and Coastal Areas in the Arabian Gulf Region. SOIL BIOLOGY 2008. [DOI: 10.1007/978-3-540-74231-9_13] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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16
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Radwan SS, Dashti N, El-Nemr I, Khanafer M. Hydrocarbon utilization by nodule bacteria and plant growth-promoting rhizobacteria. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2007; 9:475-486. [PMID: 18246774 DOI: 10.1080/15226510701709580] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
Standard and locally isolated nodule bacteria and plant growth-promoting rhizobacteria (PGPR) were grown on crude oil and individual pure hydrocarbons as sole sources of carbon and energy. The nodule bacteria included two standard Rhizobium leguminosarum strains, two standard Bradyrhizobium japonicum strains, and one unknown nodule bacterial strain that was locally isolated from Vicia faba nodules. The PGPR included one standard Serratia liquefaciens strain and two locally isolated strains of Pseudomonas aeruginosa and Flavobacterium sp. The pure hydrocarbons tested included n-alkanes with chain lengths from C9 to C40 and the aromatic hydrocarbons benzene, biphenyle, naphthalene, phenanthrene, and toluene. Quantitative gas liquid chromatographic analyses confirmed that pure cultures of representative nodule bacteria and PGPR could attenuate n-octadecane and phenanthrene in the surrounding nutrient medium. Further, intact nodules of V. faba containing bacteria immobilized on and within those nodules reduced hydrocarbon levels in a medium in which those nodules were shaken. It was concluded that legume crops are suitable phytoremediation tools for oily soil, since they enrich such soils not only with fixed nitrogen, but also with hydrocarbon-utilizing microorganisms. Further, legume nodules may have biotechnological value as materials for cleaning oily liquid wastes.
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Affiliation(s)
- Samir S Radwan
- Department of Biological Sciences, Faculty of Science, Kuwait University, Safat, Kuwait.
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17
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Yang JK, Zhang WT, Yuan TY, Zhou JC. Genotypic characteristics of the rrn operon and genome of indigenous soybean Bradyrhizobia in cropping zones of China. Can J Microbiol 2006; 52:968-76. [PMID: 17110965 DOI: 10.1139/w06-052] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Four genetic assays, 16S rRNA restriction fragment length polymorphism (RFLP), 16S rRNA sequencing, 16S-23S rRNA intergenetic spacer (IGS) RFLP, and amplified fragment length polymorphism (AFLP), were conducted to determine the genotypic characteristics of 44 indigenous strains of Bradyrhizobium from soybean (Glycine max L.) cropping zones of China. The results generated from different assays showed that soybean bradyrhizobial isolates comprised four genomic groups. Group I was composed of strains mainly isolated from the North and Northeast plains of China. All four assays confirmed this group as phylogenetically divergent from all the reference strains. Strains of the group may represent a new species. Strains in Group II isolated from a variety of geographic regions were ascribed to B. liaoningense. Strains in Group III, mainly isolated from Central and East China, were closely related to the reference strains of B. japonicum. Strains in Group IV belonged to B. elkanii.
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Affiliation(s)
- Jiang Ke Yang
- College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China
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