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Aiswarya N, Remya C, Remashree AB, Sadasivan C, Dileep KV. Binding of rosmarinic acid curcumin and capsaicin with PLA2: A comparative study. Biochem Biophys Res Commun 2022; 626:187-191. [PMID: 35994828 DOI: 10.1016/j.bbrc.2022.08.028] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Accepted: 08/11/2022] [Indexed: 11/02/2022]
Abstract
Phospholipase A2 (PLA2) is a key enzyme involved in the formation of pro-inflammatory mediators like eicosanoids. Inhibition of PLA2 is regarded as one of the effective methods of controlling inflammation. The present study investigated the binding potentials of three natural compounds, rosmarinic acid (RA), capsaicin (CAP), and curcumin (CUR) by means of in silico and in vitro methods. Our study revealed that RA has relatively better binding affinity and inhibition potentials when compared to the other two molecules. Our ITC experiments were also suggested a slightly better binding energy for the RA. The stoichiometry of the protein ligand complex obtained from one of the ITC experiments suggested the possibilities of binding of a small molecule MCW (degraded product of CUR) on PLA2. Overall study demonstrated that the anti-inflammatory activity of RA, CUR and CAP may be partly due to the inhibition of PLA2.
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Affiliation(s)
- N Aiswarya
- Laboratory for Computational and Structural Biology, Jubilee Centre for Medical Research, Jubilee Mission Medical College and Research Institute, Thrissur, Kerala, 680005, India
| | - Chandran Remya
- Laboratory for Computational and Structural Biology, Jubilee Centre for Medical Research, Jubilee Mission Medical College and Research Institute, Thrissur, Kerala, 680005, India
| | - A B Remashree
- Indian Cardamom Research Institute, Spices Board Min Commerce & Industry, Government of India, Myladumpara, Idukki, Kerala, 685553, India
| | - C Sadasivan
- Department of Biotechnology and Microbiology, Dr. Janaki Ammal Campus, Kannur University, Thalassery, Kerala, 670661, India
| | - K V Dileep
- Laboratory for Computational and Structural Biology, Jubilee Centre for Medical Research, Jubilee Mission Medical College and Research Institute, Thrissur, Kerala, 680005, India.
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Dileep KV, Remya C, Tintu I, Mandal PK, Karthe P, Haridas M, Sadasivan C. Crystal structure of phospholipase A 2 in complex with 1-naphthaleneacetic acid. IUBMB Life 2018; 70:995-1001. [PMID: 30120882 DOI: 10.1002/iub.1924] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2018] [Revised: 05/12/2018] [Accepted: 06/04/2018] [Indexed: 11/06/2022]
Abstract
Phospholipase A2 (PLA2 ) is one of the rate limiting enzymes involved in the production of arachidonic acid, a potent inflammatory mediator. PLA2 is widely distributed all over the animal kingdom. It is also seen in inflammatory exudation and venoms of different organisms. The studies demonstrated that PLA2 inhibitors have broad spectrum activities that they can either be used against inflammation or envenomation. In this study, the inhibitory activity of 1-napthaleneacetic acid (NAA) against porcine pancreatic PLA2 has been explained through isothermal titration calorimetry and enzyme kinetics studies. The atomic level of interactions of NAA with PLA2 was also studied using X-ray crystallography. Apart from these findings, the theoretical binding affinities and mode of interactions of two naphthalene-based NSAIDs such as naproxen (NAP) and nabumetone (NAB) were studied through molecular modeling. The studies proved that the selected ligands are binding at the doorway of the active site cleft and hindering the substrate entry to the active site. The study brings out a potential scaffold for the designing of broad spectrum PLA2 inhibitors which can be used for inflammation or envenomation. © 2018 IUBMB Life, 70(10):995-1001, 2018.
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Affiliation(s)
- Kalarickal V Dileep
- Department of Biotechnology and Microbiology, Kannur University, Kannur, Kerala, India
| | - Chandran Remya
- Department of Biotechnology and Microbiology, Kannur University, Kannur, Kerala, India
| | - Ignatius Tintu
- Department of Biotechnology and Microbiology, Kannur University, Kannur, Kerala, India
| | - Pradeep K Mandal
- Centre of Advanced Study in Crystallography and Biophysics, University of Madras, Chennai, Tamil Nadu, India
| | - Ponnuraj Karthe
- Centre of Advanced Study in Crystallography and Biophysics, University of Madras, Chennai, Tamil Nadu, India
| | - Madathilkovilakathu Haridas
- Department of Biotechnology and Microbiology, Kannur University, Kannur, Kerala, India.,Inter University Centre for Bioscience, Kannur University, Kannur, Kerala, India
| | - Chittalakkottu Sadasivan
- Department of Biotechnology and Microbiology, Kannur University, Kannur, Kerala, India.,Inter University Centre for Bioscience, Kannur University, Kannur, Kerala, India
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Dileep KV, Remya C, Cerezo J, Fassihi A, Pérez-Sánchez H, Sadasivan C. Comparative studies on the inhibitory activities of selected benzoic acid derivatives against secretory phospholipase A2, a key enzyme involved in the inflammatory pathway. MOLECULAR BIOSYSTEMS 2015; 11:1973-9. [DOI: 10.1039/c5mb00073d] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Inhibitory activities of selected benzoic acid derivatives against phospholipase A2.
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Affiliation(s)
- K. V. Dileep
- Department of Biotechnology and Microbiology and Inter University Centre for Biosciences
- Thalassery Campus
- Kannur University
- India
| | - C. Remya
- Department of Biotechnology and Microbiology and Inter University Centre for Biosciences
- Thalassery Campus
- Kannur University
- India
| | - J. Cerezo
- CNR–Consiglio Nazionale delle Ricerche
- Istituto di Chimica dei Composti Organo Metallici (ICCOM-CNR)
- UOS di Pisa
- I-56124 Pisa
- Italy
| | - A. Fassihi
- Bioinformatics and High Performance Computing Research Group (BIO-HPC)
- Computer Science Department
- Universidad Católica San Antonio de Murcia (UCAM)
- 30107 Guadalupe
- Spain
| | - H. Pérez-Sánchez
- Bioinformatics and High Performance Computing Research Group (BIO-HPC)
- Computer Science Department
- Universidad Católica San Antonio de Murcia (UCAM)
- 30107 Guadalupe
- Spain
| | - C. Sadasivan
- Department of Biotechnology and Microbiology and Inter University Centre for Biosciences
- Thalassery Campus
- Kannur University
- India
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Dileep K, Remya C, Tintu I, Haridas M, Sadasivan C. Binding of NDGA and morin with phospholipase A2: experimental and computational evidences. MOLECULAR SIMULATION 2014. [DOI: 10.1080/08927022.2013.875621] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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