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Dimbath E, Middleton S, Peach MS, Ju AW, George S, de Castro Brás L, Vadati A. Physics-based in silico modelling of microvascular pulmonary perfusion in COVID-19. Proc Inst Mech Eng H 2024; 238:562-574. [PMID: 38563211 DOI: 10.1177/09544119241241550] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/04/2024]
Abstract
Due to its ability to induce heterogenous, patient-specific damage in pulmonary alveoli and capillaries, COVID-19 poses challenges in defining a uniform profile to elucidate infection across all patients. Computational models that integrate changes in ventilation and perfusion with heterogeneous damage profiles offer valuable insights into the impact of COVID-19 on pulmonary health. This study aims to develop an in silico hypothesis-testing platform specifically focused on studying microvascular pulmonary perfusion in COVID-19-infected lungs. Through this platform, we explore the effects of various acinar-level pulmonary perfusion abnormalities on global lung function. Our modelling approach simulates changes in pulmonary perfusion and the resulting mismatch of ventilation and perfusion in COVID-19-afflicted lungs. Using this coupled modelling platform, we conducted multiple simulations to assess different scenarios of perfusion abnormalities in COVID-19-infected lungs. The simulation results showed an overall decrease in ventilation-perfusion (V/Q) ratio with inclusion of various types of perfusion abnormalities such as hypoperfusion with and without microangiopathy. This model serves as a foundation for comprehending and comparing the spectrum of findings associated with COVID-19 in the lung, paving the way for patient-specific modelling of microscale lung damage in emerging pulmonary pathologies like COVID-19.
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Affiliation(s)
- Elizabeth Dimbath
- Department of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, NC, USA
| | - Shea Middleton
- Department of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, NC, USA
| | - Matthew Sean Peach
- Department of Radiation Oncology, Brody School of Medicine, East Carolina University, Greenville, NC, USA
| | - Andrew W Ju
- Department of Radiation Oncology, Brody School of Medicine, East Carolina University, Greenville, NC, USA
| | - Stephanie George
- Department of Engineering, College of Engineering and Technology, East Carolina University, Greenville, NC, USA
| | - Lisandra de Castro Brás
- Department of Physiology, Brody School of Medicine, East Carolina University, Greenville, NC, USA
| | - Alex Vadati
- Department of Engineering, College of Engineering and Technology, East Carolina University, Greenville, NC, USA
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Middleton S, Dimbath E, Pant A, George SM, Maddipati V, Peach MS, Yang K, Ju AW, Vahdati A. Towards a multi-scale computer modeling workflow for simulation of pulmonary ventilation in advanced COVID-19. Comput Biol Med 2022; 145:105513. [PMID: 35447459 PMCID: PMC9005224 DOI: 10.1016/j.compbiomed.2022.105513] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2022] [Revised: 03/10/2022] [Accepted: 04/08/2022] [Indexed: 12/16/2022]
Abstract
Physics-based multi-scale in silico models offer an excellent opportunity to study the effects of heterogeneous tissue damage on airflow and pressure distributions in COVID-19-afflicted lungs. The main objective of this study is to develop a computational modeling workflow, coupling airflow and tissue mechanics as the first step towards a virtual hypothesis-testing platform for studying injury mechanics of COVID-19-afflicted lungs. We developed a CT-based modeling approach to simulate the regional changes in lung dynamics associated with heterogeneous subject-specific COVID-19-induced damage patterns in the parenchyma. Furthermore, we investigated the effect of various levels of inflammation in a meso-scale acinar mechanics model on global lung dynamics. Our simulation results showed that as the severity of damage in the patient's right lower, left lower, and to some extent in the right upper lobe increased, ventilation was redistributed to the least injured right middle and left upper lobes. Furthermore, our multi-scale model reasonably simulated a decrease in overall tidal volume as the level of tissue injury and surfactant loss in the meso-scale acinar mechanics model was increased. This study presents a major step towards multi-scale computational modeling workflows capable of simulating the effect of subject-specific heterogenous COVID-19-induced lung damage on ventilation dynamics.
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Affiliation(s)
- Shea Middleton
- Department of Engineering, College of Engineering and Technology, East Carolina University, Greenville, NC, USA
| | - Elizabeth Dimbath
- Department of Engineering, College of Engineering and Technology, East Carolina University, Greenville, NC, USA
| | - Anup Pant
- Department of Engineering, College of Engineering and Technology, East Carolina University, Greenville, NC, USA
| | - Stephanie M George
- Department of Engineering, College of Engineering and Technology, East Carolina University, Greenville, NC, USA
| | - Veeranna Maddipati
- Division of Pulmonary and Critical Medicine, Brody School of Medicine, East Carolina University, Greenville, NC, USA
| | - M Sean Peach
- Department of Radiation Oncology, Brody School of Medicine, East Carolina University, Greenville, NC, USA
| | - Kaida Yang
- Department of Radiation Oncology, Brody School of Medicine, East Carolina University, Greenville, NC, USA
| | - Andrew W Ju
- Department of Radiation Oncology, Brody School of Medicine, East Carolina University, Greenville, NC, USA
| | - Ali Vahdati
- Department of Engineering, College of Engineering and Technology, East Carolina University, Greenville, NC, USA.
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Kim M, Doganay O, Matin TN, Povey T, Gleeson FV. CT-based Airway Flow Model to Assess Ventilation in Chronic Obstructive Pulmonary Disease: A Pilot Study. Radiology 2019; 293:666-673. [PMID: 31617794 DOI: 10.1148/radiol.2019190395] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Background The lack of functional information in thoracic CT remains a limitation of its use in the clinical management of chronic obstructive pulmonary disease (COPD). Purpose To compare the distribution of pulmonary ventilation assessed by a CT-based full-scale airway network (FAN) flow model with hyperpolarized xenon 129 (129Xe) MRI (hereafter, 129Xe MRI) and technetium 99m-diethylenetriaminepentaacetic acid aerosol SPECT ventilation imaging (hereafter, V-SPECT) in participants with COPD. Materials and Methods In this prospective study performed between May and August 2017, pulmonary ventilation in participants with COPD was computed by using the FAN flow model. The modeled pulmonary ventilation was compared with functional imaging data from breath-hold time-series 129Xe MRI and V-SPECT. FAN-derived ventilation images on the coronal plane and volumes of interest were compared with functional lung images. Percentage lobar ventilation estimated by the FAN model was compared with that measured at 129Xe MRI and V-SPECT. The statistical significance of ventilation distribution between FAN and functional images was demonstrated with the Spearman correlation coefficient and χ2 distance. Results For this study, nine participants (seven men [mean age, 65 years ± 5 {standard deviation}] and two women [mean age, 63 years ± 7]) with COPD that was Global Initiative for Chronic Obstructive Lung Disease stage II-IV were enrolled. FAN-modeled ventilation profile showed strong positive correlation with images from 129Xe MRI (ρ = 0.67; P < .001) and V-SPECT (ρ = 0.65; P < .001). The χ2 distances of the ventilation histograms in the volumes of interest between the FAN and 129Xe MRI and FAN and V-SPECT were 0.16 ± 0.08 and 0.28 ± 0.14, respectively. The ratios of lobar ventilations in the models were linearly correlated to images from 129Xe MRI (ρ = 0.67; P < .001) and V-SPECT (ρ = 0.59; P < .001). Conclusion A CT-based full-scale airway network flow model provided regional pulmonary ventilation information for chronic obstructive pulmonary disease and correlates with hyperpolarized xenon 129 MRI and technetium 99m-diethylenetriaminepentaacetic acid aerosol SPECT ventilation imaging. © RSNA, 2019 Online supplemental material is available for this article. See also the editorial by Schiebler and Parraga in this issue.
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Affiliation(s)
- Minsuok Kim
- From the Departments of Engineering Science (M.K., T.P.) and Oncology (O.D., F.V.G.), University of Oxford, Parks Road, Oxford OX1 3PJ, England; and Department of Radiology, The Churchill Hospital, Oxford University Hospitals NHS Trust, Headington, England (O.D., T.N.M., F.V.G.)
| | - Ozkan Doganay
- From the Departments of Engineering Science (M.K., T.P.) and Oncology (O.D., F.V.G.), University of Oxford, Parks Road, Oxford OX1 3PJ, England; and Department of Radiology, The Churchill Hospital, Oxford University Hospitals NHS Trust, Headington, England (O.D., T.N.M., F.V.G.)
| | - Tahreema N Matin
- From the Departments of Engineering Science (M.K., T.P.) and Oncology (O.D., F.V.G.), University of Oxford, Parks Road, Oxford OX1 3PJ, England; and Department of Radiology, The Churchill Hospital, Oxford University Hospitals NHS Trust, Headington, England (O.D., T.N.M., F.V.G.)
| | - Thomas Povey
- From the Departments of Engineering Science (M.K., T.P.) and Oncology (O.D., F.V.G.), University of Oxford, Parks Road, Oxford OX1 3PJ, England; and Department of Radiology, The Churchill Hospital, Oxford University Hospitals NHS Trust, Headington, England (O.D., T.N.M., F.V.G.)
| | - Fergus V Gleeson
- From the Departments of Engineering Science (M.K., T.P.) and Oncology (O.D., F.V.G.), University of Oxford, Parks Road, Oxford OX1 3PJ, England; and Department of Radiology, The Churchill Hospital, Oxford University Hospitals NHS Trust, Headington, England (O.D., T.N.M., F.V.G.)
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Smith TB, Rubin GD, Solomon J, Harrawood B, Choudhury KR, Samei E. Local complexity metrics to quantify the effect of anatomical noise on detectability of lung nodules in chest CT imaging. J Med Imaging (Bellingham) 2018; 5:045502. [PMID: 30840750 PMCID: PMC6250496 DOI: 10.1117/1.jmi.5.4.045502] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2018] [Accepted: 10/23/2018] [Indexed: 12/21/2022] Open
Abstract
The purpose of this study is to (1) develop metrics to characterize the regional anatomical complexity of the lungs, and (2) relate these metrics with lung nodule detection in chest CT. A free-scrolling reader-study with virtually inserted nodules (13 radiologists × 157 total nodules = 2041 responses) is used to characterize human detection performance. Metrics of complexity based on the local density and orientation of distracting vasculature are developed for two-dimensional (2-D) and three-dimensional (3-D) considerations of the image volume. Assessed characteristics included the distribution of 2-D/3-D vessel structures of differing orientation (dubbed "2-D/3-D and dot-like/line-like distractor indices"), contiguity of inserted nodules with local vasculature, mean local gray-level surrounding each nodule, the proportion of lung voxels to total voxels in each section, and 3-D distance of each nodule from the trachea bifurcation. A generalized linear mixed-effects statistical model is used to determine the influence of each these metrics on nodule detectability. In order of decreasing effect size: 3-D line-like distractor index, 2-D line-like distractor index, 2-D dot-like distractor index, local mean gray-level, contiguity with 2-D dots, lung area, and contiguity with 3-D lines all significantly affect detectability ( P < 0.05 ). These data demonstrate that local lung complexity degrades detection of lung nodules.
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Affiliation(s)
- Taylor Brunton Smith
- Duke University, Carl E. Ravin Advanced Imaging Labs, Durham, North Carolina, United States
- Duke University, Department of Radiology, Durham, North Carolina, United States
- Duke University, Medical Physics Graduate Program, Durham, North Carolina, United States
| | - Geoffrey D. Rubin
- Duke University, Department of Radiology, Durham, North Carolina, United States
| | - Justin Solomon
- Duke University, Carl E. Ravin Advanced Imaging Labs, Durham, North Carolina, United States
- Duke University, Department of Radiology, Durham, North Carolina, United States
- Duke University, Medical Physics Graduate Program, Durham, North Carolina, United States
| | - Brian Harrawood
- Duke University, Carl E. Ravin Advanced Imaging Labs, Durham, North Carolina, United States
- Duke University, Department of Radiology, Durham, North Carolina, United States
| | - Kingshuk Roy Choudhury
- Duke University, Carl E. Ravin Advanced Imaging Labs, Durham, North Carolina, United States
- Duke University, Department of Radiology, Durham, North Carolina, United States
| | - Ehsan Samei
- Duke University, Carl E. Ravin Advanced Imaging Labs, Durham, North Carolina, United States
- Duke University, Department of Radiology, Durham, North Carolina, United States
- Duke University, Medical Physics Graduate Program, Durham, North Carolina, United States
- Duke University, Department of Biomedical Engineering, Durham, North Carolina, United States
- Duke University, Department of Electrical and Computer Engineering, Durham, North Carolina, United States
- Duke University, Department of Physics, Durham, North Carolina, United States
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