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He X, Luo Z, Yi M, Yan Y. Characterization of the mitochondrial genome of parupeneus indicus (perciformes, mullidae). Mitochondrial DNA B Resour 2022; 7:859-860. [PMID: 35602335 PMCID: PMC9116234 DOI: 10.1080/23802359.2022.2075287] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Parupeneus indicus, a species in the family Mullidae, inhabits the coastal and inner lagoon reefs of the Indian and Pacific oceans. The mitochondrial genome of P. indicus is 16,566 base pairs in length and contains 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes, and a D-loop control region. The overall base composition is 26.58% A, 24.83% T, 30.39% C, and 18.19% G, indicating an AT-rich profile (51.41%). Phylogenetic analysis based on the 13 PCGs revealed a close evolutionary relationship between P. indicus and P. barberinus. The data obtained in this study represent a valuable mitogenomic resource for population studies in the family Mullidae and will contribute to gaining a better understanding of the conservation genetics and environmental DNA of these fish.
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Affiliation(s)
- Xiongbo He
- College of Fisheries, Guangdong Ocean University, Zhanjiang, China
- Marine Resources Big Data Center of South China Sea, Southern Marine Science and Engineering Guangdong Laboratory (Zhanjiang), Zhanjiang, China
| | - Zhisen Luo
- College of Fisheries, Guangdong Ocean University, Zhanjiang, China
| | - Murong Yi
- College of Fisheries, Guangdong Ocean University, Zhanjiang, China
- Marine Resources Big Data Center of South China Sea, Southern Marine Science and Engineering Guangdong Laboratory (Zhanjiang), Zhanjiang, China
| | - Yunrong Yan
- College of Fisheries, Guangdong Ocean University, Zhanjiang, China
- Marine Resources Big Data Center of South China Sea, Southern Marine Science and Engineering Guangdong Laboratory (Zhanjiang), Zhanjiang, China
- Guangdong Provincial Engineering and Technology Research Center of Far Sea Fisheries Management and Fishing of South China Sea, Guangdong Ocean University, Zhanjiang, China
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He X, Yi M, Yan Y, Ju YM. Characterization of the mitochondrial genome of Favonigobius reichei (Perciformes, Gobiidae). MITOCHONDRIAL DNA PART B-RESOURCES 2020; 5:2893-2894. [PMID: 33457991 PMCID: PMC7782015 DOI: 10.1080/23802359.2020.1791014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
Favonigobius reichei, belongs to the family Gobiidae, which is widely distributed in estuarine and marine waters of the coasts of the Indian and the western Pacific Oceans. The entire mitochondrial genome of F. reichei is 16,415 base pairs (bp) in length and contained 13 protein-coding genes (PCGs), 2 ribosomal RNA (rRNA) genes, and 22 transfer RNA (tRNA) genes. The overall base composition is 27.71% A, 26.78% T, 28.02% C, and 17.49% G, showing AT-rich feature (54.49%). Phylogenetic analysis based on 13 PCGs shows the F. reichei has the closest evolutionary relationship with Myersina macrostoma. This work provides a valuable mitogenome resource for better understanding of the conservation genetics, environmental DNA, and population studies in the family Gobiidae.
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Affiliation(s)
- Xiongbo He
- College of Fisheries, Guangdong Ocean University, Zhanjiang, China.,Marine Resources Big Data Center of South China Sea, Southern Marine Science and Engineering Guangdong Laboratory (Zhanjiang), Zhanjiang, China
| | - Murong Yi
- College of Fisheries, Guangdong Ocean University, Zhanjiang, China.,Marine Resources Big Data Center of South China Sea, Southern Marine Science and Engineering Guangdong Laboratory (Zhanjiang), Zhanjiang, China
| | - Yunrong Yan
- College of Fisheries, Guangdong Ocean University, Zhanjiang, China.,Marine Resources Big Data Center of South China Sea, Southern Marine Science and Engineering Guangdong Laboratory (Zhanjiang), Zhanjiang, China.,Guangdong Provincial Engineering and Technology Research Center of Far Sea Fisheries Management and Fishing of South China Sea, Guangdong Ocean University, Zhanjiang, China.,Center of Marine Fisheries Information Technology, Shenzhen Institute of Guangdong Ocean University, Shenzhen, China
| | - Yu-Min Ju
- National Museum of Marine Biology and Aquarium, Checheng Township, Taiwan.,Graduate Institute of Marine Biology, National Dong Hwa University, Shoufeng Township, Taiwan
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