1
|
Ma QD, Zhang HJ, Qi YR, Yin ZY, Yi DY, Yi SR. The complete chloroplast genomes of Polygonatum hunanense, P. verticillatum, and P. caulialatum and their phylogenetic positions. Mitochondrial DNA B Resour 2024; 9:720-724. [PMID: 38859915 PMCID: PMC11164183 DOI: 10.1080/23802359.2024.2357681] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2023] [Accepted: 05/15/2024] [Indexed: 06/12/2024] Open
Abstract
Polygonatum hunanense H.H. Liu & B.Z. Wang (2021) and P. verticillatum (L.) All. (1875) have been widely used as foods and as folk medicines in China and India, and P. caulialatum S. R. Yi (2021) has recently been described as a new medical plant in China. There is at present a lack of genome information regarding the species. Hence, this study reports the complete chloroplast genomes of the three species. The genomes of P. hunanense, P. verticillatum, and P. caulialatum were 155,583 bp, 155,650 bp, and 155,352 bp in length, respectively. They contained large single-copy (LSC) regions of 84,412 bp, 84,404 bp, and 84,285 bp, small single-copy (SSC) regions of 18,427 bp, 18,416 bp, and 18,463 bp, and a pair of inverted repeats of 26,372 bp, 26,415 bp, and 26,302 bp, respectively. The chloroplast genomes of P. hunanense, P. verticillatum, and P. caulialatum had 133 (103 unique) genes, consisting of 87 protein-coding genes, 38 ribosomal ribonucleic acid (RNA) genes, and eight transfer RNA genes, respectively. A maximum-likelihood phylogenetic tree showed that P. kingianum Coll. et Hemsl. var. grandifolium D.M. Liu & W.Z. Zeng (1991) was closer to P. cyrtonema Hua (1892) rather than to P. kingianum Coll. et Hemsl. (1890), further supporting its status as a unique species of the genus. Moreover, P. verticillatum was separated from the easily confused herb P. cirrhifolium (Wall.) Royle (1839), while P. caulialatum was closest to P. humile Fisch. ex Maxim. (1859). This research provides a foundation for further study of these herbs.
Collapse
Affiliation(s)
- Qing-Dong Ma
- School of Pharmacy, Chongqing Three Gorges Medical College, Chongqing, PR China
- Chongqing Key Laboratory of Development and Utilization of DaoDi Medicinal Materials in Three Gorges Reservoir Area, Chongqing, PR China
- Chongqing Engineering Research Centre of Antitumor Natural Drugs, Chongqing, PR China
| | - Hong-Jing Zhang
- School of Pharmacy, Chongqing Three Gorges Medical College, Chongqing, PR China
- Chongqing Key Laboratory of Development and Utilization of DaoDi Medicinal Materials in Three Gorges Reservoir Area, Chongqing, PR China
| | - Yan-Ran Qi
- School of Pharmacy, Chongqing Three Gorges Medical College, Chongqing, PR China
- Chongqing Key Laboratory of Development and Utilization of DaoDi Medicinal Materials in Three Gorges Reservoir Area, Chongqing, PR China
| | - Zheng-You Yin
- School of Pharmacy, Chongqing Three Gorges Medical College, Chongqing, PR China
| | - Dong-Yang Yi
- School of Pharmacy, Chongqing Three Gorges Medical College, Chongqing, PR China
- Chongqing Key Laboratory of Development and Utilization of DaoDi Medicinal Materials in Three Gorges Reservoir Area, Chongqing, PR China
- Chongqing Engineering Research Centre of Antitumor Natural Drugs, Chongqing, PR China
| | - Si-Rong Yi
- School of Pharmacy, Chongqing Three Gorges Medical College, Chongqing, PR China
- Chongqing Key Laboratory of Development and Utilization of DaoDi Medicinal Materials in Three Gorges Reservoir Area, Chongqing, PR China
- Chongqing Engineering Research Centre of Antitumor Natural Drugs, Chongqing, PR China
| |
Collapse
|
2
|
Gu L, Su T, Luo GL, Hu GX. The complete chloroplast genome sequence of Heteropolygonatum ginfushanicum (Asparagaceae) and phylogenetic analysis. Mitochondrial DNA B Resour 2021; 6:1799-1802. [PMID: 34104777 PMCID: PMC8168753 DOI: 10.1080/23802359.2021.1933636] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022] Open
Abstract
Heteropolygonatum ginfushanicum is an endemic epiphytic herb in China. The complete chloroplast (cp) genome of H. ginfushanicum is reported in this study. The total length of the cp genome is 155,508 bp with a typical quadripartite structure consisting of a large single copy region (LSC) of 84,552 bp and a small single copy region (SSC) of 18,528 bp, separated by a pair of 26,214 bp inverted repeats (IRs). It encodes a total of 113 unique genes, including 79 protein-coding, 30 tRNA, and four rRNA genes. Phylogenetic analysis indicated that H. ginfushanicum is sister to Heteropolygonatum marmoratum within subfamily Nolinoideae.
Collapse
Affiliation(s)
- Li Gu
- College of Life Sciences, Guizhou University, Guiyang, China.,The Key Laboratory of Plant Resources Conservation and Germplasm Innovation in Mountainous Region Ministry of Education, Guizhou University, Guiyang, China.,Institute of Agro-bioengineering, Guizhou University, Guiyang, China
| | - Ting Su
- College of Life Sciences, Guizhou University, Guiyang, China.,The Key Laboratory of Plant Resources Conservation and Germplasm Innovation in Mountainous Region Ministry of Education, Guizhou University, Guiyang, China.,Institute of Agro-bioengineering, Guizhou University, Guiyang, China
| | - Guang-Ling Luo
- College of Life Sciences, Guizhou University, Guiyang, China.,The Key Laboratory of Plant Resources Conservation and Germplasm Innovation in Mountainous Region Ministry of Education, Guizhou University, Guiyang, China.,Institute of Agro-bioengineering, Guizhou University, Guiyang, China
| | - Guo-Xiong Hu
- College of Life Sciences, Guizhou University, Guiyang, China
| |
Collapse
|