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Shen J, Li W, Deng S, Zhang T. Supervised and unsupervised learning of directed percolation. Phys Rev E 2021; 103:052140. [PMID: 34134215 DOI: 10.1103/physreve.103.052140] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2021] [Accepted: 05/12/2021] [Indexed: 11/07/2022]
Abstract
Machine learning (ML) has been well applied to studying equilibrium phase transition models by accurately predicating critical thresholds and some critical exponents. Difficulty will be raised, however, for integrating ML into nonequilibrium phase transitions. The extra dimension in a given nonequilibrium system, namely time, can greatly slow down the procedure toward the steady state. In this paper we find that by using some simple techniques of ML, non-steady-state configurations of directed percolation (DP) suffice to capture its essential critical behaviors in both (1+1) and (2+1) dimensions. With the supervised learning method, the framework of our binary classification neural networks can identify the phase transition threshold, as well as the spatial and temporal correlation exponents. The characteristic time t_{c}, specifying the transition from active phases to absorbing ones, is also a major product of the learning. Moreover, we employ the convolutional autoencoder, an unsupervised learning technique, to extract dimensionality reduction representations and cluster configurations of (1+1) bond DP. It is quite appealing that such a method can yield a reasonable estimation of the critical point.
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Affiliation(s)
- Jianmin Shen
- Key Laboratory of Quark and Lepton Physics (MOE) and Institute of Particle Physics, Central China Normal University, Wuhan 430079, China
| | - Wei Li
- Key Laboratory of Quark and Lepton Physics (MOE) and Institute of Particle Physics, Central China Normal University, Wuhan 430079, China.,Max-Planck-Institute for Mathematics in the Sciences, 04103 Leipzig, Germany
| | - Shengfeng Deng
- Key Laboratory of Quark and Lepton Physics (MOE) and Institute of Particle Physics, Central China Normal University, Wuhan 430079, China
| | - Tao Zhang
- Key Laboratory of Quark and Lepton Physics (MOE) and Institute of Particle Physics, Central China Normal University, Wuhan 430079, China
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Doostmohammadi A, Shendruk TN, Thijssen K, Yeomans JM. Onset of meso-scale turbulence in active nematics. Nat Commun 2017; 8:15326. [PMID: 28508858 PMCID: PMC5440851 DOI: 10.1038/ncomms15326] [Citation(s) in RCA: 88] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2016] [Accepted: 03/21/2017] [Indexed: 11/09/2022] Open
Abstract
Meso-scale turbulence is an innate phenomenon, distinct from inertial turbulence, that spontaneously occurs at low Reynolds number in fluidized biological systems. This spatiotemporal disordered flow radically changes nutrient and molecular transport in living fluids and can strongly affect the collective behaviour in prominent biological processes, including biofilm formation, morphogenesis and cancer invasion. Despite its crucial role in such physiological processes, understanding meso-scale turbulence and any relation to classical inertial turbulence remains obscure. Here we show how the motion of active matter along a micro-channel transitions to meso-scale turbulence through the evolution of locally disordered patches (active puffs) from an ordered vortex-lattice flow state. We demonstrate that the stationary critical exponents of this transition to meso-scale turbulence in a channel coincide with the directed percolation universality class. This finding bridges our understanding of the onset of low-Reynolds-number meso-scale turbulence and traditional scale-invariant turbulence in confinement.
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Affiliation(s)
- Amin Doostmohammadi
- The Rudolf Peierls Centre for Theoretical Physics, Department of Physics, University of Oxford, 1 Keble Road, Oxford OX1 3NP, UK
| | - Tyler N Shendruk
- The Rudolf Peierls Centre for Theoretical Physics, Department of Physics, University of Oxford, 1 Keble Road, Oxford OX1 3NP, UK.,Center for Studies in Physics and Biology, The Rockefeller University, 1230 York Avenue, New York, New York 10065, USA
| | - Kristian Thijssen
- Department of Applied Physics, Eindhoven University of Technology, 5600 MB Eindhoven, The Netherlands
| | - Julia M Yeomans
- The Rudolf Peierls Centre for Theoretical Physics, Department of Physics, University of Oxford, 1 Keble Road, Oxford OX1 3NP, UK
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Fallert SV, Ludlam JJ, Taraskin SN. Simulating the contact process in heterogeneous environments. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2008; 77:051125. [PMID: 18643044 DOI: 10.1103/physreve.77.051125] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2007] [Revised: 12/20/2007] [Indexed: 05/26/2023]
Abstract
The one-dimensional contact process (CP) in a heterogeneous environment-a binary chain consisting of two types of site with different recovery rates-is investigated. It is argued that the commonly used random-sequential Monte Carlo simulation method which employs a discrete notion of time is not faithful to the rates of the contact process in a heterogeneous environment. Therefore, a modification of this algorithm along with two alternative continuous-time implementations are analyzed. The latter two are an adapted version of the n -fold way used in Ising model simulations and a method based on a modified priority queue. It is demonstrated that the commonly used (but incorrect as we believe) discrete-time method yields a different critical threshold from all other algorithms considered. Finite-size scaling of the lowest gap in the spectrum of the Liouville time-evolution operator for the CP gives an estimate of the critical rate which supports these findings. Further, a performance test indicates an advantage in using the continuous-time methods in systems with heterogeneous rates. This result promises to help in the analysis of the CP in disordered systems with heterogeneous rates in which simulation is a challenging task due to very long relaxation times.
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Affiliation(s)
- S V Fallert
- Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom.
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Scaling properties of percolation clusters. ACTA ACUST UNITED AC 2005. [DOI: 10.1007/bfb0012540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
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Phani MK, Dhar D. Real-space renormalisation group: application to directed percolation. ACTA ACUST UNITED AC 2000. [DOI: 10.1088/0022-3719/15/7/009] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Arora BM, Barma M, Dhar D, Phani MK. Conductivity of a two-dimensional random diode-insulator network. ACTA ACUST UNITED AC 2000. [DOI: 10.1088/0022-3719/16/15/013] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Chen CC, Park H, den Nijs M. Active width at a slanted active boundary in directed percolation. PHYSICAL REVIEW. E, STATISTICAL PHYSICS, PLASMAS, FLUIDS, AND RELATED INTERDISCIPLINARY TOPICS 1999; 60:2496-500. [PMID: 11970047 DOI: 10.1103/physreve.60.2496] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/1999] [Indexed: 04/18/2023]
Abstract
The width W of the active region around an active moving wall in a directed percolation process diverges at the percolation threshold p(c) as W approximately Aepsilon(-nu( parallel)) ln(epsilon(0)/epsilon), with epsilon=p(c)-p, epsilon(0) a constant, and nu( parallel)=1.734 the critical exponent of the characteristic time needed to reach the stationary state xi( parallel) approximately epsilon(-nu(parallel)). The logarithmic factor arises from screening the statistically independent needle shaped subclusters in the active region. Numerical data confirm this scaling behavior.
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Affiliation(s)
- C C Chen
- Department of Physics, University of Washington, Seattle, Washington 98195-1560, USA
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Yeomans J, Derrida B. Bulk and interface scaling properties of the chiral clock model. ACTA ACUST UNITED AC 1999. [DOI: 10.1088/0305-4470/18/12/031] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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De'Bell K, Essam JW. Directed percolation: mean field theory and series expansions for some two-dimensional lattices. ACTA ACUST UNITED AC 1999. [DOI: 10.1088/0305-4470/16/2/020] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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De'Bell K, Essam JW. Series expansion analysis of directed site-bond percolation on the square and simple cubic lattices. ACTA ACUST UNITED AC 1999. [DOI: 10.1088/0305-4470/18/2/025] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Benzoni J. A Monte Carlo study of scaling and universality in 2D directed percolation. ACTA ACUST UNITED AC 1999. [DOI: 10.1088/0305-4470/17/13/017] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Dhar D. Diode-resistor percolation in two and three dimensions. I. Upper bounds on critical probability. ACTA ACUST UNITED AC 1999. [DOI: 10.1088/0305-4470/15/6/025] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Essam JW, De'Bell K. Series expansion studies of directed percolation: estimates of the correlation length exponents. ACTA ACUST UNITED AC 1999. [DOI: 10.1088/0305-4470/14/11/007] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Redner S, Brooks JS. Analogue experiments and computer simulations for directed conductivity. ACTA ACUST UNITED AC 1999. [DOI: 10.1088/0305-4470/15/11/007] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Duxbury PM, Yeomans J, Beale PD. Wavevector scaling and the phase diagram of the chiral clock model. ACTA ACUST UNITED AC 1999. [DOI: 10.1088/0305-4470/17/4/005] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Family F. Relation between size and shape of isotropic and directed percolation clusters and lattice animals. ACTA ACUST UNITED AC 1999. [DOI: 10.1088/0305-4470/15/11/003] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Redner S, Coniglio A. Flory theory for directed lattice animals and directed percolation. ACTA ACUST UNITED AC 1999. [DOI: 10.1088/0305-4470/15/6/005] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Abstract
We give a method for obtaining upper bounds on the critical probability in oriented bond percolation in two dimensions. This method enables us to prove that the critical probability is at most 0.6863, greatly improving the best published upper bound, 0.84. We also prove that our method can be used to give arbitrarily good upper bounds. We also use a slight variant of our method to obtain an upper bound of 0.72599 for the critical probability in oriented site percolation.
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Caldarelli G, Maritan A, Seno F. Optimal path and directed percolation. PHYSICAL REVIEW. E, STATISTICAL PHYSICS, PLASMAS, FLUIDS, AND RELATED INTERDISCIPLINARY TOPICS 1996; 53:R2029-R2032. [PMID: 9964599 DOI: 10.1103/physreve.53.r2029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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Kurrer C, Schulten K. Dependence of percolation thresholds on lattice connectivity. PHYSICAL REVIEW. E, STATISTICAL PHYSICS, PLASMAS, FLUIDS, AND RELATED INTERDISCIPLINARY TOPICS 1993; 48:614-617. [PMID: 9960628 DOI: 10.1103/physreve.48.614] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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ben-Avraham D, Bidaux R, Schulman LS. Transfer-matrix methods and results for directed percolation. PHYSICAL REVIEW. A, ATOMIC, MOLECULAR, AND OPTICAL PHYSICS 1991; 43:7093-7096. [PMID: 9905072 DOI: 10.1103/physreva.43.7093] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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Buda F, Florio GM, Giaquinta PV. Multicritical behavior of a square-lattice-gas model with anisotropic repulsive interactions: A transfer-matrix scaling study. PHYSICAL REVIEW. B, CONDENSED MATTER 1987; 35:2021-2028. [PMID: 9941633 DOI: 10.1103/physrevb.35.2021] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/11/2023]
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Sahimi M. Model for the formation of nonequilibrium clusters. PHYSICAL REVIEW. A, GENERAL PHYSICS 1986; 33:3618-3621. [PMID: 9897100 DOI: 10.1103/physreva.33.3618] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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Sahimi M, Hughes BD, Scriven L, Ted Davis H. Dispersion in flow through porous media—I. One-phase flow. Chem Eng Sci 1986. [DOI: 10.1016/0009-2509(86)87128-7] [Citation(s) in RCA: 149] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Sahimi M, Goddard JD. Superelastic percolation networks and the viscosity of gels. PHYSICAL REVIEW. B, CONDENSED MATTER 1985; 32:1869-1871. [PMID: 9937245 DOI: 10.1103/physrevb.32.1869] [Citation(s) in RCA: 30] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/11/2023]
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Beale PD, Duxbury PM, Yeomans J. Finite-size scaling of two-dimensional axial next-nearest-neighbor Ising models. PHYSICAL REVIEW. B, CONDENSED MATTER 1985; 31:7166-7170. [PMID: 9935637 DOI: 10.1103/physrevb.31.7166] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/11/2023]
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Breuer N, Janssen HK. Critical behaviour of directed branched polymers and the dynamics at the Yang-Lee edge singularity. ACTA ACUST UNITED AC 1982. [DOI: 10.1007/bf01305193] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Nadal J, Derrida B, Vannimenus J. Directed lattice animals in 2 dimensions : numerical and exact results. ACTA ACUST UNITED AC 1982. [DOI: 10.1051/jphys:0198200430110156100] [Citation(s) in RCA: 75] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
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