Controlling protein crystal growth rate by means of temperature

Evolution of a Polydisperse Ensemble of Spherical Particles in a Metastable Medium with Allowance for Heat and Mass Exchange with the Environment

Motivated by a wide range of applications in various fields of physics and materials science, we consider a generalized approach to the evolution of a polydisperse ensemble of spherical particles in metastable media. An integrodifferential system of governing equations, consisting of a kinetic equation for the particle-size distribution function (Fokker–Planck type equation) and a balance equation for the temperature (concentration) of a metastable medium, is formulated. The kinetic equation takes into account fluctuations in the growth/reduction rates of individual particles, the velocity of particles in a spatial direction, the withdrawal of particles of a given size from the metastable medium, and their source/sink term. The heat (mass) balance equation takes into account the growth/reduction of particles in a metastable system as well as heat (mass) exchange with the environment. A generalized system of equations describes various physical and chemical processes of phase transformations, such as the growth and dissolution of crystals, the evaporation of droplets, the boiling of liquids and the combustion of a polydisperse fuel. The ways of analytical solution of the formulated integrodifferential system of equations based on the saddle-point technique and the separation of variables method are considered. The theory can be applied when describing the evolution of an ensemble of particles at the initial and intermediate stages of phase transformation when the distances between the particles are large enough, and interactions between them can be neglected.

Self-induced temperature gradients in Brownian dynamics

Brownian systems often surmount energy barriers by absorbing and emitting heat to and from their local environment. Usually, the temperature gradients created by this heat exchange are assumed to dissipate instantaneously. Here we relax this assumption to consider the case where Brownian dynamics on a time-independent potential can lead to self-induced temperature gradients. In the same way that externally imposed temperature gradients can cause directed motion, these self-induced gradients affect the dynamics of the Brownian system. The result is a coupling between the local environment and the Brownian subsystem. We explore the resulting dynamics and thermodynamics of these coupled systems and develop a robust method for numerical simulation. In particular, by focusing on one-dimensional situations, we show that self-induced temperature gradients reduce barrier-crossing rates. We also consider a heat engine and a heat pump based on temperature gradients induced by a Brownian system in a nonequilibrium potential.

Landauer's blowtorch effect as a thermodynamic cross process: Brownian cooling

The local heating of a selected region in a double-well potential alters the relative stability of the two wells and gives rise to an enhancement of population transfer to the cold well. We show that this Landauer's blowtorch effect may be considered in the spirit of a thermodynamic cross process linearly connecting the flux of particles and the thermodynamic force associated with the temperature difference and consequently ensuring the existence of a reverse cross effect. This reverse effect is realized by directing the thermalized particles in a double-well potential by application of an external bias from one well to the other, which suffers cooling.

Quantitative analysis of molecular-level DNA crystal growth on a 2D surface

Crystallization is an essential process for understanding a molecule's aggregation behavior. It provides basic information on crystals, including their nucleation and growth processes. Deoxyribonucleic acid (DNA) has become an interesting building material because of its remarkable properties for constructing various shapes of submicron-scale DNA crystals by self-assembly. The recently developed substrate-assisted growth (SAG) method produces fully covered DNA crystals on various substrates using electrostatic interactions and provides an opportunity to observe the overall crystallization process. In this study, we investigated quantitative analysis of molecular-level DNA crystallization using the SAG method. Coverage and crystal size distribution were studied by controlling the external parameters such as monomer concentration, annealing temperature, and annealing time. Rearrangement during crystallization was also discussed. We expect that our study will provide overall picture of the fabrication process of DNA crystals on the charged substrate and promote practical applications of DNA crystals in science and technology.