1
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Miranda JP, Locatelli E, Valeriani C. Self-Organized States from Solutions of Active Ring Polymers in Bulk and under Confinement. J Chem Theory Comput 2024; 20:1636-1645. [PMID: 38153343 DOI: 10.1021/acs.jctc.3c00818] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2023]
Abstract
In the present work, we study, by means of numerical simulations, the structural and dynamical behavior of a suspension of active ring polymers in bulk and under lateral confinement. At high activity, when changing the distance between the confining planes and the polymers' density, we identify the emergence of a self-organized dynamical state, characterized by the coexistence of slowly diffusing clusters of rotating disks and faster rings moving in between them. We further assess that self-organization is robust in a range of polymer sizes, and we identify a critical value of the activity, necessary to trigger cluster formation. This system has distinctive features resembling at the same time polymers, liquid crystals, and active systems, where the interplay between activity, topology, and confinement leads to a spontaneous segregation in an initially one-component solution.
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Affiliation(s)
- Juan Pablo Miranda
- Dep. Est. de la Materia, Física Térmica y Electrónica, Universidad Complutense de Madrid, 28040 Madrid, Spain
- GISC - Grupo Interdisciplinar de Sistemas Complejos, 28040 Madrid, Spain
| | - Emanuele Locatelli
- Department of Physics and Astronomy, University of Padova, 35131 Padova, Italy
- INFN, Sezione di Padova, via Marzolo 8, I-35131 Padova, Italy
| | - Chantal Valeriani
- Dep. Est. de la Materia, Física Térmica y Electrónica, Universidad Complutense de Madrid, 28040 Madrid, Spain
- GISC - Grupo Interdisciplinar de Sistemas Complejos, 28040 Madrid, Spain
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2
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Voß J, Wittkowski R. Dependence of the acoustic propulsion of nano- and microcones on their orientation and aspect ratio. Sci Rep 2023; 13:12858. [PMID: 37553408 PMCID: PMC10409789 DOI: 10.1038/s41598-023-39231-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2022] [Accepted: 07/21/2023] [Indexed: 08/10/2023] Open
Abstract
Recent research revealed the orientation-dependent propulsion of a cone-shaped colloidal particle that is exposed to a planar traveling ultrasound wave. Here, we extend the previous research by considering nano- and microcones with different aspect ratios and studying how the propulsion of a particle depends on its orientation and aspect ratio. We also study how the orientation-averaged propulsion of a cone-shaped particle, which corresponds to an isotropic ultrasound field, depends on its aspect ratio and identify an aspect ratio of 1/2 where the orientation-averaged propulsion is particularly strong. To make our simulation results easier reusable for follow-up research, we provide a corresponding simple analytic representation.
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Affiliation(s)
- Johannes Voß
- Institut für Theoretische Physik, Center for Soft Nanoscience, Westfälische Wilhelms-Universität Münster, 48149, Münster, Germany
| | - Raphael Wittkowski
- Institut für Theoretische Physik, Center for Soft Nanoscience, Westfälische Wilhelms-Universität Münster, 48149, Münster, Germany.
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3
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Gomez-Solano JR, Rodríguez RF, Salinas-Rodríguez E. Nonequilibrium dynamical structure factor of a dilute suspension of active particles in a viscoelastic fluid. Phys Rev E 2022; 106:054602. [PMID: 36559383 DOI: 10.1103/physreve.106.054602] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Accepted: 10/11/2022] [Indexed: 11/06/2022]
Abstract
In this work we investigate the dynamics of the number-density fluctuations of a dilute suspension of active particles in a linear viscoelastic fluid. We propose a model for the frequency-dependent diffusion coefficient of the active particles which captures the effect of rotational diffusion on the persistence of their self-propelled motion and the viscoelasticity of the medium. Using fluctuating hydrodynamics, the linearized equations for the active suspension are derived, from which we calculate its dynamic structure factor and the corresponding intermediate scattering function. For a Maxwell-type rheological model, we find an intricate dependence of these functions on the parameters that characterize the viscoelasticity of the solvent and the activity of the particles, which can significantly deviate from those of an inert suspension of passive particles and of an active suspension in a Newtonian solvent. In particular, in some regions of the parameter space we uncover the emergence of oscillations in the intermediate scattering function at certain wave numbers which represent the hallmark of the nonequilibrium particle activity in the dynamical structure of the suspension and also encode the viscoelastic properties of the medium.
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Affiliation(s)
- Juan Ruben Gomez-Solano
- Instituto de Física, Universidad Nacional Autónoma de México, Ciudad de México, Código Postal 04510, Mexico
| | - Rosalío F Rodríguez
- Instituto de Física, Universidad Nacional Autónoma de México, Ciudad de México, Código Postal 04510, Mexico.,FENOMEC, Universidad Nacional Autónoma de México, Apdo. Postal 20-726, 01000 Ciudad de México, Mexico
| | - Elizabeth Salinas-Rodríguez
- Departamento I. P. H., Universidad Autónoma Metropolitana, Iztapalapa, Apdo. Postal 55-534, 09340 Ciudad de México, Mexico
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4
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Mayer Martins J, Wittkowski R. Inertial dynamics of an active Brownian particle. Phys Rev E 2022; 106:034616. [PMID: 36266913 DOI: 10.1103/physreve.106.034616] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2022] [Accepted: 08/23/2022] [Indexed: 06/16/2023]
Abstract
Active Brownian motion commonly assumes spherical overdamped particles. However, self-propelled particles are often neither symmetric nor overdamped yet underlie random fluctuations from their surroundings. Active Brownian motion has already been generalized to include asymmetric particles. Separately, recent findings have shown the importance of inertial effects for particles of macroscopic size or in low-friction environments. We aim to consolidate the previous findings into the general description of a self-propelled asymmetric particle with inertia. We derive the Langevin equation of such a particle as well as the corresponding Fokker-Planck equation. Furthermore, a formula is presented that allows reconstructing the hydrodynamic resistance matrix of the particle by measuring its trajectory. Numerical solutions of the Langevin equation show that, independently of the particle's shape, the noise-free trajectory at zero temperature starts with an inertial transition phase and converges to a circular helix. We discuss this universal convergence with respect to the helical motion that many microorganisms exhibit.
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Affiliation(s)
- Jonas Mayer Martins
- Institute of Theoretical Physics, Center for Soft Nanoscience, University of Münster, 48149 Münster, Germany
| | - Raphael Wittkowski
- Institute of Theoretical Physics, Center for Soft Nanoscience, University of Münster, 48149 Münster, Germany
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5
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Rebocho TC, Tasinkevych M, Dias CS. Effect of anisotropy on the formation of active particle films. Phys Rev E 2022; 106:024609. [PMID: 36109963 DOI: 10.1103/physreve.106.024609] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Accepted: 08/03/2022] [Indexed: 06/15/2023]
Abstract
Active colloids belong to a class of nonequilibrium systems where energy uptake, conversion, and dissipation occur at the level of individual colloidal particles, which can lead to particles' self-propelled motion and surprising collective behavior. Examples include coexistence of vapor- and liquid-like steady states for active particles with repulsive interactions only, phenomena known as motility-induced phase transitions. Similarly to motile unicellular organisms, active colloids tend to accumulate at confining surfaces forming dense adsorbed films. In this work, we study the structure and dynamics of aggregates of self-propelled particles near confining solid surfaces, focusing on the effects of the particle anisotropic interactions. We performed Langevin dynamics simulations of two complementary models for active particles: ellipsoidal particles interacting through the Gay-Berne potential and rodlike particles composed of several repulsive Lennard-Jones beads. We observe a nonmonotonic behavior of the structure of clusters formed along the confining surface as a function of the particle aspect ratio, with a film spreading when particles are near-spherical, compact clusters with hedgehog-like particle orientation for more elongated active particles, and a complex dynamical behavior for an intermediate aspect ratio. The stabilization time of cluster formation along the confining surface also displays a nonmonotonic dependence on the aspect ratio, with a local minimum at intermediate values. Additionally, we demonstrate that the hedgehog-like aggregates formed by Gay-Berne ellipsoids exhibit higher structural stability as compared to the ones formed by purely repulsive active rods, which are stable due to the particle activity only.
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Affiliation(s)
- T C Rebocho
- Departamento de Física, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisbon, Portugal
- Centro de Física Teórica e Computacional, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisbon, Portugal
| | - M Tasinkevych
- Departamento de Física, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisbon, Portugal
- Centro de Física Teórica e Computacional, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisbon, Portugal
- SOFT Group, School of Science and Technology, Nottingham Trent University, Clifton Lane, Nottingham NG11 8NS, United Kingdom
| | - C S Dias
- Departamento de Física, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisbon, Portugal
- Centro de Física Teórica e Computacional, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisbon, Portugal
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6
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Voß J, Wittkowski R. Orientation-Dependent Propulsion of Triangular Nano- and Microparticles by a Traveling Ultrasound Wave. ACS NANO 2022; 16:3604-3612. [PMID: 35263102 DOI: 10.1021/acsnano.1c02302] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Previous studies on ultrasound-propelled nano- and microparticles have considered only systems in which the particle orientation is perpendicular to the direction of propagation of the ultrasound. However, in future applications of these particles, they will typically be able to attain other orientations. Therefore, using direct acoustofluidic simulations, here we study how the propulsion of triangular nano- and microparticles, which are known to have a particularly efficient acoustic propulsion and are therefore promising candidates for future applications, depends on their orientation relative to the propagation direction of a traveling ultrasound wave. Our results reveal that the propulsion of the particles depends strongly on their orientation relative to the direction of wave propagation and that the particles tend to orient perpendicularly to the wave direction. We also address the orientation-averaged translational and angular velocities of the particles, which correspond to the particles' effective propulsion for an isotropic exposure to ultrasound. Our results allow assessment of how free ultrasound-propelled colloidal particles move in three spatial dimensions and thus constitute an important step toward the realization of envisaged future applications of such particles.
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Affiliation(s)
- Johannes Voß
- Institut für Theoretische Physik, Center for Soft Nanoscience, Westfälische Wilhelms-Universität Münster, D-48149 Münster, Germany
| | - Raphael Wittkowski
- Institut für Theoretische Physik, Center for Soft Nanoscience, Westfälische Wilhelms-Universität Münster, D-48149 Münster, Germany
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7
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Fu D, Xie D, Wang F, Chen B, Wang Z, Peng F. Mechanically Optimize T Cells Activation by Spiky Nanomotors. Front Bioeng Biotechnol 2022; 10:844091. [PMID: 35273958 PMCID: PMC8902353 DOI: 10.3389/fbioe.2022.844091] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2021] [Accepted: 01/26/2022] [Indexed: 11/13/2022] Open
Abstract
T cell activation is vital for immune response initiation and modulation. Except for the strength of the interaction between T cell receptors (TCR) and peptides on major histocompatibility complex molecules (MHC), mechanical force, mediated by professional mechanosensitive ion channels, contributes to activating T cells. The intrinsic characteristic of synthetic micro/nanomotors that convert diverse energy sources into physical movement and force, opening up new possibilities for T cell regulation. In this work, Pd/Au nanomotors with spiky morphology were fabricated, and in the presence of low concentrations of hydrogen peroxide fuel, the motors exhibited continuous locomotion in the cellular biological environment. Physical cues (force and pressure) generated by the dynamic performance are sensed by mechanosensitive ion channels of T cells and trigger Ca2+ influx and subsequent activation. The successful demonstration that mechanical signals generated in the bio microenvironment can potentiate T cells activation, represents a potential approach for cell-based cancer immunotherapy.
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Affiliation(s)
- Dongmei Fu
- School of Materials Science and Engineering, Sun-Yat-sen University, Guangzhou, China
| | - Dazhi Xie
- School of Materials Science and Engineering, Sun-Yat-sen University, Guangzhou, China
| | - Fei Wang
- School of Pharmaceutical Science, Southern Medical University, Guangzhou, China
| | - Bin Chen
- School of Pharmaceutical Science, Southern Medical University, Guangzhou, China
| | - Zhen Wang
- School of Materials Science and Engineering, Sun-Yat-sen University, Guangzhou, China
| | - Fei Peng
- School of Materials Science and Engineering, Sun-Yat-sen University, Guangzhou, China
- *Correspondence: Fei Peng,
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8
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Cao Z, Jiang H, Hou Z. Designing circle swimmers: Principles and strategies. J Chem Phys 2021; 155:234901. [PMID: 34937364 DOI: 10.1063/5.0065529] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Various microswimmers move along circles rather than straight lines due to their swimming mechanisms, body shapes, or hydrodynamic effects. In this paper, we adopt the concepts of stochastic thermodynamics to analyze circle swimmers confined to a two-dimensional plane and study the trade-off relations between various physical quantities, such as precision, energy cost, and rotational speed. Based on these findings, we predict principles and strategies for designing microswimmers of special optimized functions under limited energy resource conditions, which will bring new experimental inspiration for designing smart motors.
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Affiliation(s)
- Zhiyu Cao
- Department of Chemical Physics and Hefei National Laboratory for Physical Sciences at Microscales, iChEM, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Huijun Jiang
- Department of Chemical Physics and Hefei National Laboratory for Physical Sciences at Microscales, iChEM, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Zhonghuai Hou
- Department of Chemical Physics and Hefei National Laboratory for Physical Sciences at Microscales, iChEM, University of Science and Technology of China, Hefei, Anhui 230026, China
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9
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Voß J, Wittkowski R. Acoustically propelled nano- and microcones: fast forward and backward motion. NANOSCALE ADVANCES 2021; 4:281-293. [PMID: 36132955 PMCID: PMC9417971 DOI: 10.1039/d1na00655j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2021] [Accepted: 10/21/2021] [Indexed: 05/07/2023]
Abstract
We focus on cone-shaped nano- and microparticles, which have recently been found to show particularly strong propulsion when they are exposed to a traveling ultrasound wave, and study based on direct acoustofluidic computer simulations how their propulsion depends on the cones' aspect ratio. The simulations reveal that the propulsion velocity and even its sign are very sensitive to the aspect ratio, where short particles move forward whereas elongated particles move backward. Furthermore, we identify a cone shape that allows for a particularly large propulsion speed. Our results contribute to the understanding of the propulsion of ultrasound-propelled colloidal particles, suggest a method for separation and sorting of nano- and microcones concerning their aspect ratio, and provide useful guidance for future experiments and applications.
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Affiliation(s)
- Johannes Voß
- Institut für Theoretische Physik, Center for Soft Nanoscience, Westfälische Wilhelms-Universität Münster D-48149 Münster Germany
| | - Raphael Wittkowski
- Institut für Theoretische Physik, Center for Soft Nanoscience, Westfälische Wilhelms-Universität Münster D-48149 Münster Germany
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10
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Pirhadi E, Cheng X, Yong X. Dependency of active pressure and equation of state on stiffness of wall. Sci Rep 2021; 11:22204. [PMID: 34773049 PMCID: PMC8590019 DOI: 10.1038/s41598-021-01605-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Accepted: 11/01/2021] [Indexed: 11/09/2022] Open
Abstract
Autonomous motion and motility are hallmarks of active matter. Active agents, such as biological cells and synthetic colloidal particles, consume internal energy or extract energy from the environment to generate self-propulsion and locomotion. These systems are persistently out of equilibrium due to continuous energy consumption. It is known that pressure is not always a state function for generic active matter. Torque interaction between active constituents and confinement renders the pressure of the system a boundary-dependent property. The mechanical pressure of anisotropic active particles depends on their microscopic interactions with a solid wall. Using self-propelled dumbbells confined by solid walls as a model system, we perform numerical simulations to explore how variations in the wall stiffness influence the mechanical pressure of dry active matter. In contrast to previous findings, we find that mechanical pressure can be independent of the interaction of anisotropic active particles with walls, even in the presence of intrinsic torque interaction. Particularly, the dependency of pressure on the wall stiffness vanishes when the stiffness is above a critical level. In such a limit, the dynamics of dumbbells near the walls are randomized due to the large torque experienced by the dumbbells, leading to the recovery of pressure as a state variable of density.
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Affiliation(s)
- Emad Pirhadi
- grid.264260.40000 0001 2164 4508Department of Mechanical Engineering, Binghamton University, Binghamton, NY 13902 USA
| | - Xiang Cheng
- grid.17635.360000000419368657Department of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, MN 55455 USA
| | - Xin Yong
- Department of Mechanical Engineering, Binghamton University, Binghamton, NY, 13902, USA.
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11
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Sprenger AR, Jahanshahi S, Ivlev AV, Löwen H. Time-dependent inertia of self-propelled particles: The Langevin rocket. Phys Rev E 2021; 103:042601. [PMID: 34005997 DOI: 10.1103/physreve.103.042601] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2021] [Accepted: 03/16/2021] [Indexed: 06/12/2023]
Abstract
Many self-propelled objects are large enough to exhibit inertial effects but still suffer from environmental fluctuations. The corresponding basic equations of motion are governed by active Langevin dynamics, which involve inertia, friction, and stochastic noise for both the translational and orientational degrees of freedom coupled via the self-propulsion along the particle orientation. In this paper, we generalize the active Langevin model to time-dependent parameters and explicitly discuss the effect of time-dependent inertia for achiral and chiral particles. Realizations of this situation are manifold, ranging from minirockets (which are self-propelled by burning their own mass), to dust particles in plasma (which lose mass by evaporating material), to walkers with expiring activity. Here we present analytical solutions for several dynamical correlation functions, such as mean-square displacement and orientational and velocity autocorrelation functions. If the parameters exhibit a slow power law in time, we obtain anomalous superdiffusion with a nontrivial dynamical exponent. Finally, we constitute the "Langevin rocket" model by including orientational fluctuations in the traditional Tsiolkovsky rocket equation. We calculate the mean reach of the Langevin rocket and discuss different mass ejection strategies to maximize it. Our results can be tested in experiments on macroscopic robotic or living particles or in self-propelled mesoscopic objects moving in media of low viscosity, such as complex plasma.
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Affiliation(s)
- Alexander R Sprenger
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, D-40225 Düsseldorf, Germany
| | - Soudeh Jahanshahi
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, D-40225 Düsseldorf, Germany
| | - Alexei V Ivlev
- Max-Planck-Institut für Extraterrestrische Physik, 85748 Garching, Germany
| | - Hartmut Löwen
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, D-40225 Düsseldorf, Germany
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12
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Li YH, Chen SC. Propulsion Mechanism of Flexible Microbead Swimmers in the Low Reynolds Number Regime. MICROMACHINES 2020; 11:mi11121107. [PMID: 33333847 PMCID: PMC7765260 DOI: 10.3390/mi11121107] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/06/2020] [Revised: 12/10/2020] [Accepted: 12/12/2020] [Indexed: 11/16/2022]
Abstract
A propulsion mechanism for a flexible microswimmer constructed from superparamagnetic microbeads with different diameters and subjected to an oscillating field was studied experimentally and theoretically herein. Various types of artificial swimmers with different bending patterns were fabricated to determine the flexibility and an effective waveform for a planar beating flagellum. Waveform evolutions for various swimmer configurations were studied to determine the flexible mechanism of the swimmers. A one-armed microswimmer can propel itself only if the friction of its wavelike body is anisotropic. A swimmer with a larger head and a stronger magnetic dipole moment with a flexible tail allows the bending wave to propagate from the head toward the tail to generate forward thrust. The oscillating head and tail do not simultaneously generate positive thrust all the time within a period of oscillation. To increase the propulsion for a bending swimmer, this study proposes a novel configuration for a microbead swimmer that ensures better swimming efficiency. The ratio of the oscillation amplitude of the head to the length of the swimmer (from 0.26 to 0.28) produces a faster swimmer. On the other hand, the swimmer is propelled more effectively if the ratio of the oscillation amplitude of the tail to the length of the swimmer is from 0.29 to 0.33. This study determined the optimal configuration for a flexible microbead swimmer that generates the greatest propulsion in a low Reynolds number environment.
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13
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Affiliation(s)
- Roland G. Winkler
- Theoretical Physics of Living Matter, Institute of Biological Information Processing and Institute for Advanced Simulation, Forschungszentrum Jülich, D-52425 Jülich, Germany
| | - Gerhard Gompper
- Theoretical Physics of Living Matter, Institute of Biological Information Processing and Institute for Advanced Simulation, Forschungszentrum Jülich, D-52425 Jülich, Germany
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14
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Quillen AC, Smucker JP, Peshkov A. Boids in a loop: Self-propelled particles within a flexible boundary. Phys Rev E 2020; 101:052618. [PMID: 32575281 DOI: 10.1103/physreve.101.052618] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2020] [Accepted: 04/09/2020] [Indexed: 11/07/2022]
Abstract
We numerically explore the behavior of repelling and aligning self-propelled polar particles (boids) in two dimensions enclosed by a damped flexible and elastic loop-shaped boundary. We observe disordered, polar ordered, jammed, and circulating states. The latter produce a rich variety of boundary shapes, including circles, ovals, irregulars, ruffles, or sprockets, depending upon the bending moment of the boundary and the boundary to particle mass ratio. With the exception of the circulating states with nonround boundaries, states resemble those exhibited by attracting self-propelled particles, but here the confining boundary acts in place of a cohesive force. We attribute the formation of ruffles to instability mediated by pressure on the boundary when the speed of waves on the boundary approximately matches the self-propelled particle's swim speed.
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Affiliation(s)
- A C Quillen
- Department of Physics and Astronomy, University of Rochester, Rochester, New York 14618, USA
| | - J P Smucker
- Department of Physics and Astronomy, University of Rochester, Rochester, New York 14618, USA.,Department of Physics, Pennsylvania State University, Behrend, Pennsylvania 16513, USA
| | - A Peshkov
- Department of Physics and Astronomy, University of Rochester, Rochester, New York 14618, USA
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15
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Bisht K, Marathe R. Rectification of twitching bacteria through narrow channels: A numerical simulations study. Phys Rev E 2020; 101:042409. [PMID: 32422849 DOI: 10.1103/physreve.101.042409] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2019] [Accepted: 04/02/2020] [Indexed: 11/07/2022]
Abstract
Bacteria living on surfaces use different types of motility mechanisms to move on the surface in search of food or to form microcolonies. Twitching is one such form of motility employed by bacteria such as Neisseria gonorrhoeae, in which the polymeric extensions known as type IV pili mediate its movement. Pili extending from the cell body adhere to the surface and pull the bacteria by retraction. The bacterial movement is decided by the two-dimensional tug-of-war among the pili attached to the surface. Natural surfaces on which these microcrawlers dwell are generally spatially inhomogeneous and have varying surface properties. Their motility is known to be affected by the topography of the surfaces. Therefore, it is possible to control bacterial movement by designing structured surfaces which can be potentially utilized for controlling biofilm architecture. In this paper, we numerically investigate the twitching motility in a two-dimensional corrugated channel. The bacterial movement is simulated by two different models: (a) a detailed tug-of-war model which extensively describe the twitching motility of bacteria assisted by pili and (b) a coarse-grained run-and-tumble model which depicts the motion of wide-ranging self-propelled particles. The simulation of bacterial motion through asymmetric corrugated channels using the above models show rectification. The bacterial transport depends on the geometric parameters of the channel and inherent system parameters such as persistence length and self-propelled velocity. In particular, the variation of the particle current with the geometric parameters of the microchannels shows that one can optimize the particle current for specific values of these parameters.
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Affiliation(s)
- Konark Bisht
- Department of Physics, Indian Institute of Technology Delhi, New Delhi 110016, India
| | - Rahul Marathe
- Department of Physics, Indian Institute of Technology Delhi, New Delhi 110016, India
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16
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de Buyl P. Mesoscopic simulations of anisotropic chemically powered nanomotors. Phys Rev E 2019; 100:022603. [PMID: 31574644 DOI: 10.1103/physreve.100.022603] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2018] [Indexed: 11/07/2022]
Abstract
Chemically powered self-propelled colloids generate a motor force by converting locally a source of energy into directed motion, a process that has been explored both in experiments and in computational models. The use of active colloids as building blocks for nanotechnology opens the doors to interesting applications, provided we understand the behavior of these elementary constituents. We build a consistent mesoscopic simulation model for self-propelled colloids of complex shape with the aim of resolving the coupling between their translational and rotational motion. Considering a passive L-shaped colloidal particle, we study its Brownian dynamics and locate its center of hydrodynamics, the tracking point at which translation and rotation decouple. The active L particle displays the same circling trajectories that have been found experimentally, a result which we compare with the Brownian dynamics model. We put forward the role of hydrodynamics by comparing our results with a fluid model in which the particles' velocities are reset randomly. There, the trajectories only display random orientations. We obtain these original simulation results without any parametrization of the algorithm, which makes it a useful method for the preliminary study of active colloids, prior to experimental work.
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Affiliation(s)
- Pierre de Buyl
- Instituut voor Theoretische Fysica, KU Leuven B-3001, Belgium
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17
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Hoell C, Löwen H, Menzel AM. Multi-species dynamical density functional theory for microswimmers: Derivation, orientational ordering, trapping potentials, and shear cells. J Chem Phys 2019. [DOI: 10.1063/1.5099554] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Affiliation(s)
- Christian Hoell
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, Universitätsstraße 1, D-40225 Düsseldorf, Germany
| | - Hartmut Löwen
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, Universitätsstraße 1, D-40225 Düsseldorf, Germany
| | - Andreas M. Menzel
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, Universitätsstraße 1, D-40225 Düsseldorf, Germany
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18
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Debnath T, Li Y, Ghosh PK, Marchesoni F. Active microswimmers in a finite two dimensional trap: The role of hydrodynamic interaction. J Chem Phys 2019; 150:104102. [PMID: 30876348 DOI: 10.1063/1.5038149] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023] Open
Abstract
We investigate the dynamics of two identical artificial active particles suspended in a free-standing fluid film with a trap of finite radius in an acoustic tweezer. In the two dimensional Oseen approximation, their hydrodynamic coupling is long ranged, which naturally raises the question as under what conditions they can simultaneously reside in the trap. We determine a critical value of the hydrodynamic coupling below which that happens and study the ensuing active pair dynamics inside the trap. For larger couplings, only one particle sits in the trap, while the other diffuses freely until it eventually replaces the particle in the trap. Such a mechanism repeats itself with a characteristic noise-dependent mean residence-retrapping time.
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Affiliation(s)
- Tanwi Debnath
- Department of Chemistry, University of Calcutta, Kolkata 700009, India
| | - Yunyun Li
- Center for Phononics and Thermal Energy Science, School of Physics Science and Engineering, Tongji University, Shanghai 200092, People's Republic of China
| | - Pulak K Ghosh
- Department of Chemistry, Presidency University, Kolkata 700073, India
| | - Fabio Marchesoni
- Center for Phononics and Thermal Energy Science, School of Physics Science and Engineering, Tongji University, Shanghai 200092, People's Republic of China
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19
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Daddi-Moussa-Ider A, Goh S, Liebchen B, Hoell C, Mathijssen AJTM, Guzmán-Lastra F, Scholz C, Menzel AM, Löwen H. Membrane penetration and trapping of an active particle. J Chem Phys 2019; 150:064906. [DOI: 10.1063/1.5080807] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
Affiliation(s)
- Abdallah Daddi-Moussa-Ider
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, Universitätsstraße 1, 40225 Düsseldorf, Germany
| | - Segun Goh
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, Universitätsstraße 1, 40225 Düsseldorf, Germany
| | - Benno Liebchen
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, Universitätsstraße 1, 40225 Düsseldorf, Germany
| | - Christian Hoell
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, Universitätsstraße 1, 40225 Düsseldorf, Germany
| | | | - Francisca Guzmán-Lastra
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, Universitätsstraße 1, 40225 Düsseldorf, Germany
- Facultad de Ciencias, Universidad Mayor, Ave. Manuel Montt 367, Providencia, Santiago de Chile, Chile
| | - Christian Scholz
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, Universitätsstraße 1, 40225 Düsseldorf, Germany
| | - Andreas M. Menzel
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, Universitätsstraße 1, 40225 Düsseldorf, Germany
| | - Hartmut Löwen
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, Universitätsstraße 1, 40225 Düsseldorf, Germany
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20
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Hoell C, Löwen H, Menzel AM. Particle-scale statistical theory for hydrodynamically induced polar ordering in microswimmer suspensions. J Chem Phys 2018; 149:144902. [DOI: 10.1063/1.5048304] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
Affiliation(s)
- Christian Hoell
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, 40225 Düsseldorf, Germany
| | - Hartmut Löwen
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, 40225 Düsseldorf, Germany
| | - Andreas M. Menzel
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, 40225 Düsseldorf, Germany
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21
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Friedrich BM. Load response of shape-changing microswimmers scales with their swimming efficiency. Phys Rev E 2018; 97:042416. [PMID: 29758744 DOI: 10.1103/physreve.97.042416] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2017] [Indexed: 12/15/2022]
Abstract
External forces acting on a microswimmer can feed back on its self-propulsion mechanism. We discuss this load response for a generic microswimmer that swims by cyclic shape changes. We show that the change in cycle frequency is proportional to the Lighthill efficiency of self-propulsion. As a specific example, we consider Najafi's three-sphere swimmer. The force-velocity relation of a microswimmer implies a correction for a formal superposition principle for active and passive motion.
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22
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Narinder N, Bechinger C, Gomez-Solano JR. Memory-Induced Transition from a Persistent Random Walk to Circular Motion for Achiral Microswimmers. PHYSICAL REVIEW LETTERS 2018; 121:078003. [PMID: 30169097 DOI: 10.1103/physrevlett.121.078003] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2018] [Revised: 05/29/2018] [Indexed: 06/08/2023]
Abstract
We experimentally study the motion of light-activated colloidal microswimmers in a viscoelastic fluid. We find that, in such a non-Newtonian environment, the active colloids undergo an unexpected transition from enhanced angular diffusion to persistent rotational motion above a critical propulsion speed, despite their spherical shape and stiffness. We observe that, in contrast to chiral asymmetric microswimmers, the resulting circular orbits can spontaneously reverse their sense of rotation and exhibit an angular velocity and a radius of curvature that nonlinearly depend on the propulsion speed. By means of a minimal non-Markovian Langevin model for active Brownian motion, we show that these nonequilibrium effects emerge from the delayed response of the fluid with respect to the self-propulsion of the particle without counterpart in Newtonian fluids.
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Affiliation(s)
- N Narinder
- Fachbereich Physik, Universität Konstanz, Konstanz, D-78457, Germany
| | - Clemens Bechinger
- Fachbereich Physik, Universität Konstanz, Konstanz, D-78457, Germany
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23
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Daddi-Moussa-Ider A, Lisicki M, Mathijssen AJTM, Hoell C, Goh S, Bławzdziewicz J, Menzel AM, Löwen H. State diagram of a three-sphere microswimmer in a channel. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2018; 30:254004. [PMID: 29757157 DOI: 10.1088/1361-648x/aac470] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Geometric confinements are frequently encountered in soft matter systems and in particular significantly alter the dynamics of swimming microorganisms in viscous media. Surface-related effects on the motility of microswimmers can lead to important consequences in a large number of biological systems, such as biofilm formation, bacterial adhesion and microbial activity. On the basis of low-Reynolds-number hydrodynamics, we explore the state diagram of a three-sphere microswimmer under channel confinement in a slit geometry and fully characterize the swimming behavior and trajectories for neutral swimmers, puller- and pusher-type swimmers. While pushers always end up trapped at the channel walls, neutral swimmers and pullers may further perform a gliding motion and maintain a stable navigation along the channel. We find that the resulting dynamical system exhibits a supercritical pitchfork bifurcation in which swimming in the mid-plane becomes unstable beyond a transition channel height while two new stable limit cycles or fixed points that are symmetrically disposed with respect to the channel mid-height emerge. Additionally, we show that an accurate description of the averaged swimming velocity and rotation rate in a channel can be captured analytically using the method of hydrodynamic images, provided that the swimmer size is much smaller than the channel height.
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Affiliation(s)
- Abdallah Daddi-Moussa-Ider
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, Universitätsstraße 1, 40225 Düsseldorf, Germany
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24
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Eisenstecken T, Gompper G, Winkler RG. Internal dynamics of semiflexible polymers with active noise. J Chem Phys 2018; 146:154903. [PMID: 28433012 DOI: 10.1063/1.4981012] [Citation(s) in RCA: 45] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Abstract
The intramolecular dynamics of flexible and semiflexible polymers in response to active noise is studied theoretically. The active noise may either originate from interactions of a passive polymer with a bath of active Brownian particles or the polymer itself is comprised of active Brownian particles. We describe the polymer by the continuous Gaussian semiflexible-polymer model, taking into account the finite polymer extensibility. Our analytical calculations predict a strong dependence of the polymer dynamics on the activity. In particular, active semiflexible polymers exhibit a crossover from a bending elasticity-dominated dynamics at weak activity to that of flexible polymers at strong activity. The end-to-end vector correlation function decays exponentially for times longer than the longest polymer relaxation time. Thereby, the polymer relaxation determines the decay of the correlation function for long and flexible polymers. For shorter and stiffer polymers, the relaxation behavior of individual active Brownian particles dominates the decay above a certain activity. The diffusive dynamics of a polymer is substantially enhanced by the activity. Three regimes can be identified in the mean square displacement for sufficiently strong activities: an activity-induced ballistic regime at short times, followed by a Rouse-type polymer-specific regime for any polymer stiffness, and free diffusion at long times, again determined by the activity.
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Affiliation(s)
- Thomas Eisenstecken
- Theoretical Soft Matter and Biophysics, Institute of Complex Systems and Institute for Advanced Simulation, Forschungszentrum Jülich, D-52425 Jülich, Germany
| | - Gerhard Gompper
- Theoretical Soft Matter and Biophysics, Institute of Complex Systems and Institute for Advanced Simulation, Forschungszentrum Jülich, D-52425 Jülich, Germany
| | - Roland G Winkler
- Theoretical Soft Matter and Biophysics, Institute of Complex Systems and Institute for Advanced Simulation, Forschungszentrum Jülich, D-52425 Jülich, Germany
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25
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Liebchen B, Monderkamp P, Ten Hagen B, Löwen H. Viscotaxis: Microswimmer Navigation in Viscosity Gradients. PHYSICAL REVIEW LETTERS 2018; 120:208002. [PMID: 29864289 DOI: 10.1103/physrevlett.120.208002] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2017] [Indexed: 06/08/2023]
Abstract
The survival of many microorganisms, like Leptospira or Spiroplasma bacteria, can depend on their ability to navigate towards regions of favorable viscosity. While this ability, called viscotaxis, has been observed in several bacterial experiments, the underlying mechanism remains unclear. We provide a framework to study viscotaxis of biological or synthetic self-propelled swimmers in slowly varying viscosity fields and show that suitable body shapes create viscotaxis based on a systematic asymmetry of viscous forces acting on a microswimmer. Our results shed new light on viscotaxis in Spiroplasma and Leptospira and suggest that dynamic body shape changes exhibited by both types of microorganisms may have an unrecognized functionality: to prevent them from drifting to low viscosity regions where they swim poorly. The present theory classifies microswimmers regarding their ability to show viscotaxis and can be used to design synthetic viscotactic swimmers, e.g., for delivering drugs to a target region distinguished by viscosity.
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Affiliation(s)
- Benno Liebchen
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, D-40225 Düsseldorf, Germany
| | - Paul Monderkamp
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, D-40225 Düsseldorf, Germany
| | - Borge Ten Hagen
- Physics of Fluids Group and Max Planck Center Twente, Department of Science and Technology, MESA+ Institute, and J. M. Burgers Centre for Fluid Dynamics, University of Twente, 7500 AE Enschede, The Netherlands
| | - Hartmut Löwen
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, D-40225 Düsseldorf, Germany
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26
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Vutukuri HR, Bet B, van Roij R, Dijkstra M, Huck WTS. Rational design and dynamics of self-propelled colloidal bead chains: from rotators to flagella. Sci Rep 2017; 7:16758. [PMID: 29196659 PMCID: PMC5711812 DOI: 10.1038/s41598-017-16731-5] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2017] [Accepted: 11/16/2017] [Indexed: 12/22/2022] Open
Abstract
The quest for designing new self-propelled colloids is fuelled by the demand for simple experimental models to study the collective behaviour of their more complex natural counterparts. Most synthetic self-propelled particles move by converting the input energy into translational motion. In this work we address the question if simple self-propelled spheres can assemble into more complex structures that exhibit rotational motion, possibly coupled with translational motion as in flagella. We exploit a combination of induced dipolar interactions and a bonding step to create permanent linear bead chains, composed of self-propelled Janus spheres, with a well-controlled internal structure. Next, we study how flexibility between individual swimmers in a chain can affect its swimming behaviour. Permanent rigid chains showed only active rotational or spinning motion, whereas longer semi-flexible chains showed both translational and rotational motion resembling flagella like-motion, in the presence of the fuel. Moreover, we are able to reproduce our experimental results using numerical calculations with a minimal model, which includes full hydrodynamic interactions with the fluid. Our method is general and opens a new way to design novel self-propelled colloids with complex swimming behaviours, using different complex starting building blocks in combination with the flexibility between them.
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Affiliation(s)
- Hanumantha Rao Vutukuri
- Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands.
- Soft Materials, Department of Materials, ETH Zurich, 8093, Zurich, Switzerland.
| | - Bram Bet
- Institute for Theoretical Physics, Center for Extreme Matter and Emergent Phenomena, Utrecht University, Princetonplein 5, 3584 CC, Utrecht, The Netherlands
| | - René van Roij
- Institute for Theoretical Physics, Center for Extreme Matter and Emergent Phenomena, Utrecht University, Princetonplein 5, 3584 CC, Utrecht, The Netherlands
| | - Marjolein Dijkstra
- Soft condensed Matter, Debye Institute for Nanomaterials Science, Utrecht University, Princentonplein 1, 3584 CC, Utrecht, The Netherlands.
| | - Wilhelm T S Huck
- Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands.
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27
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Campbell AI, Wittkowski R, ten Hagen B, Löwen H, Ebbens SJ. Helical paths, gravitaxis, and separation phenomena for mass-anisotropic self-propelling colloids: Experiment versus theory. J Chem Phys 2017; 147:084905. [DOI: 10.1063/1.4998605] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
Affiliation(s)
- Andrew I. Campbell
- Department of Chemical and Biological Engineering, University of Sheffield, Sheffield S1 3JD, United Kingdom
| | - Raphael Wittkowski
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, D-48149 Münster, Germany
- Center for Nonlinear Science (CeNoS), Westfälische Wilhelms-Universität Münster, D-48149 Münster, Germany
| | - Borge ten Hagen
- Physics of Fluids Group and Max Planck Center Twente, Department of Science and Technology, MESA+ Institute, and J. M. Burgers Centre for Fluid Dynamics, University of Twente, 7500 AE Enschede, The Netherlands
| | - Hartmut Löwen
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, D-40225 Düsseldorf, Germany
| | - Stephen J. Ebbens
- Department of Chemical and Biological Engineering, University of Sheffield, Sheffield S1 3JD, United Kingdom
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28
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Bet B, Boosten G, Dijkstra M, van Roij R. Efficient shapes for microswimming: From three-body swimmers to helical flagella. J Chem Phys 2017; 146:084904. [PMID: 28249423 DOI: 10.1063/1.4976647] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We combine a general formulation of microswimmer equations of motion with a numerical bead-shell model to calculate the hydrodynamic interactions with the fluid, from which the swimming speed, power, and efficiency are extracted. From this framework, a generalized Scallop theorem emerges. The applicability to arbitrary shapes allows for the optimization of the efficiency with respect to the swimmer geometry. We apply this scheme to "three-body swimmers" of various shapes and find that the efficiency is characterized by the single-body friction coefficient in the long-arm regime, while in the short-arm regime the minimal approachable distance becomes the determining factor. Next, we apply this scheme to a biologically inspired set of swimmers that propel using a rotating helical flagellum. Interestingly, we find two distinct optimal shapes, one of which is fundamentally different from the shapes observed in nature (e.g., bacteria).
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Affiliation(s)
- Bram Bet
- Institute for Theoretical Physics, Center for Extreme Matter and Emergent Phenomena, Utrecht University, Princetonplein 5, 3584 CC Utrecht, The Netherlands
| | - Gijs Boosten
- Debye Institute for Nanomaterials Science, Utrecht University, Princetonplein 1, 3584 CC Utrecht, The Netherlands
| | - Marjolein Dijkstra
- Debye Institute for Nanomaterials Science, Utrecht University, Princetonplein 1, 3584 CC Utrecht, The Netherlands
| | - René van Roij
- Institute for Theoretical Physics, Center for Extreme Matter and Emergent Phenomena, Utrecht University, Princetonplein 5, 3584 CC Utrecht, The Netherlands
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29
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Jahanshahi S, Löwen H, Ten Hagen B. Brownian motion of a circle swimmer in a harmonic trap. Phys Rev E 2017; 95:022606. [PMID: 28297979 DOI: 10.1103/physreve.95.022606] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2016] [Indexed: 06/06/2023]
Abstract
We study the dynamics of a Brownian circle swimmer with a time-dependent self-propulsion velocity in an external temporally varying harmonic potential. For several situations, the noise-free swimming paths, the noise-averaged mean trajectories, and the mean-square displacements are calculated analytically or by computer simulation. Based on our results, we discuss optimal swimming strategies in order to explore a maximum spatial range around the trap center. In particular, we find a resonance situation for the maximum escape distance as a function of the various frequencies in the system. Moreover, the influence of the Brownian noise is analyzed by comparing noise-free trajectories at zero temperature with the corresponding noise-averaged trajectories at finite temperature. The latter reveal various complex self-similar spiral or rosette-like patterns. Our predictions can be tested in experiments on artificial and biological microswimmers under dynamical external confinement.
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Affiliation(s)
- Soudeh Jahanshahi
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, D-40225 Düsseldorf, Germany
| | - Hartmut Löwen
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, D-40225 Düsseldorf, Germany
| | - Borge Ten Hagen
- Physics of Fluids Group, Faculty of Science and Technology, University of Twente, 7500 AE Enschede, The Netherlands
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30
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Löwen H. Dynamical Density Functional Theory for Brownian Dynamics of Colloidal Particles. VARIATIONAL METHODS IN MOLECULAR MODELING 2017. [DOI: 10.1007/978-981-10-2502-0_9] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
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31
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Debnath D, Ghosh PK, Li Y, Marchesoni F, Li B. Communication: Cargo towing by artificial swimmers. J Chem Phys 2016; 145:191103. [PMID: 27875870 DOI: 10.1063/1.4967773] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
An active swimmer can tow a passive cargo by binding it to form a self-propelling dimer. The orientation of the cargo relative to the axis of the active dimer's head is determined by the hydrodynamic interactions associated with the propulsion mechanism of the latter. We show how the tower-cargo angular configuration greatly influences the dimer's diffusivity and, therefore, the efficiency of the active swimmer as a micro-towing motor.
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Affiliation(s)
- Debajyoti Debnath
- Department of Chemistry, Presidency University, Kolkata 700073, India
| | - Pulak K Ghosh
- Department of Chemistry, Presidency University, Kolkata 700073, India
| | - Yunyun Li
- Center for Phononics and Thermal Energy Science, School of Physics Science and Engineering, Tongji University, Shanghai 200092, People's Republic of China
| | - Fabio Marchesoni
- Center for Phononics and Thermal Energy Science, School of Physics Science and Engineering, Tongji University, Shanghai 200092, People's Republic of China
| | - Baowen Li
- Department of Mechanical Engineering, University of Colorado, Boulder, Colorado 80309, USA
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32
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Eisenstecken T, Gompper G, Winkler RG. Conformational Properties of Active Semiflexible Polymers. Polymers (Basel) 2016; 8:E304. [PMID: 30974577 PMCID: PMC6431937 DOI: 10.3390/polym8080304] [Citation(s) in RCA: 67] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2016] [Revised: 08/03/2016] [Accepted: 08/04/2016] [Indexed: 01/21/2023] Open
Abstract
The conformational properties of flexible and semiflexible polymers exposed to active noise are studied theoretically. The noise may originate from the interaction of the polymer with surrounding active (Brownian) particles or from the inherent motion of the polymer itself, which may be composed of active Brownian particles. In the latter case, the respective monomers are independently propelled in directions changing diffusively. For the description of the polymer, we adopt the continuous Gaussian semiflexible polymer model. Specifically, the finite polymer extensibility is taken into account, which turns out to be essential for the polymer conformations. Our analytical calculations predict a strong dependence of the relaxation times on the activity. In particular, semiflexible polymers exhibit a crossover from a bending elasticity-dominated dynamics to the flexible polymer dynamics with increasing activity. This leads to a significant activity-induced polymer shrinkage over a large range of self-propulsion velocities. For large activities, the polymers swell and their extension becomes comparable to the contour length. The scaling properties of the mean square end-to-end distance with respect to the polymer length and monomer activity are discussed.
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Affiliation(s)
- Thomas Eisenstecken
- Theoretical Soft Matter and Biophysics, Institute of Complex Systems and Institute for Advanced Simulation, Forschungszentrum Jülich, D-52425 Jülich, Germany.
| | - Gerhard Gompper
- Theoretical Soft Matter and Biophysics, Institute of Complex Systems and Institute for Advanced Simulation, Forschungszentrum Jülich, D-52425 Jülich, Germany.
| | - Roland G Winkler
- Theoretical Soft Matter and Biophysics, Institute of Complex Systems and Institute for Advanced Simulation, Forschungszentrum Jülich, D-52425 Jülich, Germany.
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33
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Krüger C, Klös G, Bahr C, Maass CC. Curling Liquid Crystal Microswimmers: A Cascade of Spontaneous Symmetry Breaking. PHYSICAL REVIEW LETTERS 2016; 117:048003. [PMID: 27494501 DOI: 10.1103/physrevlett.117.048003] [Citation(s) in RCA: 69] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2016] [Indexed: 06/06/2023]
Abstract
We report curling self-propulsion in aqueous emulsions of common mesogenic compounds. Nematic liquid crystal droplets self-propel in a surfactant solution with concentrations above the critical micelle concentration while undergoing micellar solubilization [Herminghaus et al., Soft Matter 10, 7008 (2014)]. We analyzed trajectories both in a Hele-Shaw geometry and in a 3D setup at variable buoyancy. The coupling between the nematic director field and the convective flow inside the droplet leads to a second symmetry breaking which gives rise to curling motion in 2D. This is demonstrated through a reversible transition to nonhelical persistent swimming by heating to the isotropic phase. Furthermore, autochemotaxis can spontaneously break the inversion symmetry, leading to helical trajectories in 3D.
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Affiliation(s)
- Carsten Krüger
- Max Planck Institute for Dynamics and Self-Organization (MPIDS), Am Faßberg 17, 37077 Göttingen, Germany
| | - Gunnar Klös
- Max Planck Institute for Dynamics and Self-Organization (MPIDS), Am Faßberg 17, 37077 Göttingen, Germany
| | - Christian Bahr
- Max Planck Institute for Dynamics and Self-Organization (MPIDS), Am Faßberg 17, 37077 Göttingen, Germany
| | - Corinna C Maass
- Max Planck Institute for Dynamics and Self-Organization (MPIDS), Am Faßberg 17, 37077 Göttingen, Germany
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34
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Geiseler A, Hänggi P, Marchesoni F, Mulhern C, Savel'ev S. Chemotaxis of artificial microswimmers in active density waves. Phys Rev E 2016; 94:012613. [PMID: 27575185 DOI: 10.1103/physreve.94.012613] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2016] [Indexed: 06/06/2023]
Abstract
Living microorganisms are capable of a tactic response to external stimuli by swimming toward or away from the stimulus source; they do so by adapting their tactic signal transduction pathways to the environment. Their self-motility thus allows them to swim against a traveling tactic wave, whereas a simple fore-rear asymmetry argument would suggest the opposite. Their biomimetic counterpart, the artificial microswimmers, also propel themselves by harvesting kinetic energy from an active medium, but, in contrast, lack the adaptive capacity. Here we investigate the transport of artificial swimmers subject to traveling active waves and show, by means of analytical and numerical methods, that self-propelled particles can actually diffuse in either direction with respect to the wave, depending on its speed and waveform. Moreover, chiral swimmers, which move along spiraling trajectories, may diffuse preferably in a direction perpendicular to the active wave. Such a variety of tactic responses is explained by the modulation of the swimmer's diffusion inside traveling active pulses.
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Affiliation(s)
| | - Peter Hänggi
- Institut für Physik, University of Augsburg, D-86159, Germany
- Nanosystems Initiative Munich, Schellingstraße 4, D-80799 München, Germany
- Department of Physics, National University of Singapore, 117551 Singapore, Republic of Singapore
| | - Fabio Marchesoni
- Center for Phononics and Thermal Energy Science, School of Physics Science and Engineering, Tongji University, Shanghai 200092, People's Republic of China
- Dipartimento di Fisica, Università di Camerino, I-62032 Camerino, Italy
| | - Colm Mulhern
- Institut für Physik, University of Augsburg, D-86159, Germany
| | - Sergey Savel'ev
- Department of Physics, Loughborough University, Loughborough, LE11 3TU, United Kingdom
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Küchler N, Löwen H, Menzel AM. Getting drowned in a swirl: Deformable bead-spring model microswimmers in external flow fields. Phys Rev E 2016; 93:022610. [PMID: 26986380 DOI: 10.1103/physreve.93.022610] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2015] [Indexed: 06/05/2023]
Abstract
Deformability is a central feature of many types of microswimmers, e.g., for artificially generated self-propelled droplets. Here, we analyze deformable bead-spring microswimmers in an externally imposed solvent flow field as simple theoretical model systems. We focus on their behavior in a circular swirl flow in two spatial dimensions. Linear (straight) two-bead swimmers are found to circle around the swirl with a slight drift to the outside with increasing activity. In contrast to that, we observe for triangular three-bead or squarelike four-bead swimmers a tendency of being drawn into the swirl and finally getting drowned, although a radial inward component is absent in the flow field. During one cycle around the swirl, the self-propulsion direction of an active triangular or squarelike swimmer remains almost constant, while their orbits become deformed exhibiting an "egglike" shape. Over time, the swirl flow induces slight net rotations of these swimmer types, which leads to net rotations of the egg-shaped orbits. Interestingly, in certain cases, the orbital rotation changes sense when the swimmer approaches the flow singularity. Our predictions can be verified in real-space experiments on artificial microswimmers.
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Affiliation(s)
- Niklas Küchler
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, D-40225 Düsseldorf, Germany
| | - Hartmut Löwen
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, D-40225 Düsseldorf, Germany
| | - Andreas M Menzel
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, D-40225 Düsseldorf, Germany
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Menzel AM, Saha A, Hoell C, Löwen H. Dynamical density functional theory for microswimmers. J Chem Phys 2016; 144:024115. [DOI: 10.1063/1.4939630] [Citation(s) in RCA: 66] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Andreas M. Menzel
- Institut für Theoretische Physik II, Weiche Materie, Heinrich-Heine-Universität Düsseldorf, 40225 Düsseldorf, Germany
| | - Arnab Saha
- Institut für Theoretische Physik II, Weiche Materie, Heinrich-Heine-Universität Düsseldorf, 40225 Düsseldorf, Germany
| | - Christian Hoell
- Institut für Theoretische Physik II, Weiche Materie, Heinrich-Heine-Universität Düsseldorf, 40225 Düsseldorf, Germany
| | - Hartmut Löwen
- Institut für Theoretische Physik II, Weiche Materie, Heinrich-Heine-Universität Düsseldorf, 40225 Düsseldorf, Germany
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Jung P, Marchegiani G, Marchesoni F. Nonholonomic diffusion of a stochastic sled. Phys Rev E 2016; 93:012606. [PMID: 26871121 DOI: 10.1103/physreve.93.012606] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2015] [Indexed: 06/05/2023]
Abstract
A sled is a stylized mechanical model of a system which is constrained to move in space in a specific orientation, i.e., in the direction of the runners of the sled or a blade. The negation of motion transverse to the runners renders the sled a nonholonomic mechanical system. In this paper we report on the unexpected and fascinating richness of the dynamics of such a sled if it is subject to random forces. Specifically we show that the ensuing random dynamics is characterized by relatively smooth sections of motion interspersed by episodes of persistent tumbling (change of orientation) and sharp reversals resembling the random walks of bacterial cells. In the presence of self-propulsion, the diffusivity of the sled can be enhanced and suppressed depending on the directionality and strength of the propulsive force.
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Affiliation(s)
- Peter Jung
- Department of Physics and Astronomy, and Quantitative Biology Institute, Ohio University, Athens, Ohio 45701, USA
| | | | - Fabio Marchesoni
- Dipartimento di Fisica, Università di Camerino, I-62032 Camerino, Italy
- Center for Phononics and Thermal Energy Science, Tongji University, Shanghai 200092, People's Republic of China
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Ma X, Jannasch A, Albrecht UR, Hahn K, Miguel-López A, Schäffer E, Sánchez S. Enzyme-Powered Hollow Mesoporous Janus Nanomotors. NANO LETTERS 2015; 15:7043-50. [PMID: 26437378 DOI: 10.1021/acs.nanolett.5b03100] [Citation(s) in RCA: 297] [Impact Index Per Article: 29.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
The development of synthetic nanomotors for technological applications in particular for life science and nanomedicine is a key focus of current basic research. However, it has been challenging to make active nanosystems based on biocompatible materials consuming nontoxic fuels for providing self-propulsion. Here, we fabricate self-propelled Janus nanomotors based on hollow mesoporous silica nanoparticles (HMSNPs), which are powered by biocatalytic reactions of three different enzymes: catalase, urease, and glucose oxidase (GOx). The active motion is characterized by a mean-square displacement (MSD) analysis of optical video recordings and confirmed by dynamic light scattering (DLS) measurements. We found that the apparent diffusion coefficient was enhanced by up to 83%. In addition, using optical tweezers, we directly measured a holding force of 64 ± 16 fN, which was necessary to counteract the effective self-propulsion force generated by a single nanomotor. The successful demonstration of biocompatible enzyme-powered active nanomotors using biologically benign fuels has a great potential for future biomedical applications.
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Affiliation(s)
- Xing Ma
- Max Planck Institute for Intelligent Systems Institution, Heisenbergstraße 3, 70569 Stuttgart, Germany
| | - Anita Jannasch
- Center for Plant Molecular Biology, University of Tübingen , Auf der Morgenstelle 32, 72076 Tübingen, Germany
| | - Urban-Raphael Albrecht
- Center for Plant Molecular Biology, University of Tübingen , Auf der Morgenstelle 32, 72076 Tübingen, Germany
| | - Kersten Hahn
- Stuttgart Center for Electron Microscopy, Max Planck Institute for Solid State Research , Heisenbergstraße 1, 70569 Stuttgart, Germany
| | - Albert Miguel-López
- Max Planck Institute for Intelligent Systems Institution, Heisenbergstraße 3, 70569 Stuttgart, Germany
| | - Erik Schäffer
- Center for Plant Molecular Biology, University of Tübingen , Auf der Morgenstelle 32, 72076 Tübingen, Germany
| | - Samuel Sánchez
- Max Planck Institute for Intelligent Systems Institution, Heisenbergstraße 3, 70569 Stuttgart, Germany
- Institució Catalana de Recerca i Estudis Avancats (ICREA), Pg. Lluís Companys 23, 08010 Barcelona, Spain
- Institut de Bioenginyeria de Catalunya (IBEC), Baldiri i Reixac 10-12, 08028 Barcelona, Spain
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Kaiser A, Popowa K, Löwen H. Active dipole clusters: From helical motion to fission. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 92:012301. [PMID: 26274156 DOI: 10.1103/physreve.92.012301] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2015] [Indexed: 06/04/2023]
Abstract
The structure of a finite particle cluster is typically determined by total energy minimization. Here we consider the case where a cluster of soft-sphere dipoles becomes active, i.e., when the individual particles exhibit an additional self-propulsion along their dipole moments. We numerically solve the overdamped equations of motion for soft-sphere dipoles in a solvent. Starting from an initial metastable dipolar cluster, the self-propulsion generates a complex cluster dynamics. The final cluster state has in general a structure widely different to the initial one, the details depend on the model parameters and on the protocol of how the self-propulsion is turned on. The center of mass of the cluster moves on a helical path, the details of which are governed by the initial cluster magnetization. An instantaneous switch to a high self-propulsion leads to fission of the cluster. However, fission does not occur if the self-propulsion is increased slowly to high strengths. Our predictions can be verified through experiments with self-phoretic colloidal Janus particles and for macroscopic self-propelled dipoles in a highly viscous solvent.
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Affiliation(s)
- Andreas Kaiser
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, Universitätsstraße 1, 40225 Düsseldorf, Germany
| | - Katarina Popowa
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, Universitätsstraße 1, 40225 Düsseldorf, Germany
| | - Hartmut Löwen
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, Universitätsstraße 1, 40225 Düsseldorf, Germany
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