1
|
Bendia AG, Callefo F, Araújo MN, Sanchez E, Teixeira VC, Vasconcelos A, Battilani G, Pellizari VH, Rodrigues F, Galante D. Metagenome-Assembled Genomes from Monte Cristo Cave (Diamantina, Brazil) Reveal Prokaryotic Lineages As Functional Models for Life on Mars. ASTROBIOLOGY 2022; 22:293-312. [PMID: 34694925 DOI: 10.1089/ast.2021.0016] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Microbial communities have been explored in various terrestrial subsurface ecosystems, showing metabolic potentials that could generate noteworthy morphological and molecular biosignatures. Recent advancements in bioinformatic tools have allowed for descriptions of novel and yet-to-be cultivated microbial lineages in different ecosystems due to the genome reconstruction approach from metagenomic data. Using shotgun metagenomic data, we obtained metagenome-assembled genomes related to cultivated and yet-to-be cultivated prokaryotic lineages from a silica and iron-rich cave (Monte Cristo) in Minas Gerais State, Brazil. The Monte Cristo Cave has been shown to possess a high diversity of genes involved with different biogeochemical cycles, including reductive and oxidative pathways related to carbon, sulfur, nitrogen, and iron. Three genomes were selected for pangenomic analysis, assigned as Truepera sp., Ca. Methylomirabilis sp., and Ca. Koribacter sp. based on their lifestyles (radiation resistance, anaerobic methane oxidation, and potential iron oxidation). These bacteria exhibit genes involved with multiple DNA repair strategies, starvation, and stress response. Because these groups have few reference genomes deposited in databases, our study adds important genomic information about these lineages. The combination of techniques applied in this study allowed us to unveil the potential relationships between microbial genomes and their ecological processes with the cave mineralogy and highlight the lineages involved with anaerobic methane oxidation, iron oxidation, and radiation resistance as functional models for the search for extant life-forms outside our planet in silica- and iron-rich environments and potentially on Mars.
Collapse
Affiliation(s)
- Amanda G Bendia
- Biological Oceanography Department, Oceanographic Institute, Universidade de São Paulo, São Paulo, Brazil
| | - Flavia Callefo
- Brazilian Synchrotron Light Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, Brazil
| | - Maicon N Araújo
- Fundamental Chemistry Department, Institute of Chemistry, Universidade de São Paulo, São Paulo, Brazil
| | - Evelyn Sanchez
- Institute of Science and Technology, Federal University of the Jequitinhonha and Mucuri, Diamantina, Brazil
| | - Verônica C Teixeira
- Brazilian Synchrotron Light Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, Brazil
| | - Alessandra Vasconcelos
- Institute of Science and Technology, Federal University of the Jequitinhonha and Mucuri, Diamantina, Brazil
| | - Gislaine Battilani
- Institute of Science and Technology, Federal University of the Jequitinhonha and Mucuri, Diamantina, Brazil
| | - Vivian H Pellizari
- Biological Oceanography Department, Oceanographic Institute, Universidade de São Paulo, São Paulo, Brazil
| | - Fabio Rodrigues
- Fundamental Chemistry Department, Institute of Chemistry, Universidade de São Paulo, São Paulo, Brazil
| | - Douglas Galante
- Brazilian Synchrotron Light Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, Brazil
| |
Collapse
|
2
|
Luo Y, Mischna MA, Lin JC, Fasoli B, Cai X, Yung YL. Mars Methane Sources in Northwestern Gale Crater Inferred From Back Trajectory Modeling. EARTH AND SPACE SCIENCE (HOBOKEN, N.J.) 2021; 8:e2021EA001915. [PMID: 35860450 PMCID: PMC9285602 DOI: 10.1029/2021ea001915] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/11/2021] [Revised: 10/26/2021] [Accepted: 10/27/2021] [Indexed: 06/15/2023]
Abstract
During its first seven years of operation, the Sample Analysis at Mars Tunable Laser Spectrometer (TLS) on board the Curiosity rover has detected seven methane spikes above a low background abundance in Gale crater. The methane spikes are likely sourced by surface emission within or around Gale crater. Here, we use inverse Lagrangian modeling techniques to identify upstream emission regions on the Martian surface for these methane spikes at an unprecedented spatial resolution. Inside Gale crater, the northwestern crater floor casts the strongest influence on the detections. Outside Gale crater, the upstream regions common to all the methane spikes extend toward the north. The contrasting results from two consecutive TLS methane measurements performed on the same sol point to an active emission site to the west or the southwest of the Curiosity rover on the northwestern crater floor. The observed spike magnitude and frequency also favor emission sites on the northwestern crater floor, unless there are fast methane removal mechanisms at work, or either the methane spikes of TLS or the non-detections of ExoMars Trace Gas Orbiter cannot be trusted.
Collapse
Affiliation(s)
- Y. Luo
- Division of Geological and Planetary SciencesCalifornia Institute of TechnologyPasadenaCAUSA
| | - M. A. Mischna
- Jet Propulsion LaboratoryCalifornia Institute of TechnologyPasadenaCAUSA
| | - J. C. Lin
- Department of Atmospheric SciencesUniversity of UtahSalt Lake CityUTUSA
| | - B. Fasoli
- Department of Atmospheric SciencesUniversity of UtahSalt Lake CityUTUSA
| | - X. Cai
- Columbia UniversityNew YorkNYUSA
| | - Y. L. Yung
- Division of Geological and Planetary SciencesCalifornia Institute of TechnologyPasadenaCAUSA
- Jet Propulsion LaboratoryCalifornia Institute of TechnologyPasadenaCAUSA
| |
Collapse
|
3
|
White LM, Shibuya T, Vance SD, Christensen LE, Bhartia R, Kidd R, Hoffmann A, Stucky GD, Kanik I, Russell MJ. Simulating Serpentinization as It Could Apply to the Emergence of Life Using the JPL Hydrothermal Reactor. ASTROBIOLOGY 2020; 20:307-326. [PMID: 32125196 DOI: 10.1089/ast.2018.1949] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
The molecules feeding life's emergence are thought to have been provided through the hydrothermal interactions of convecting carbonic ocean waters with minerals comprising the early Hadean oceanic crust. Few laboratory experiments have simulated ancient hydrothermal conditions to test this conjecture. We used the JPL hydrothermal flow reactor to investigate CO2 reduction in simulated ancient alkaline convective systems over 3 days (T = 120°C, P = 100 bar, pH = 11). H2-rich hydrothermal simulant and CO2-rich ocean simulant solutions were periodically driven in 4-h cycles through synthetic mafic and ultramafic substrates and Fe>Ni sulfides. The resulting reductants included micromoles of HS- and formate accompanied possibly by micromoles of acetate and intermittent minor bursts of methane as ascertained by isotopic labeling. The formate concentrations directly correlated with the CO2 input as well as with millimoles of Mg2+ ions, whereas the acetate did not. Also, tens of micromoles of methane were drawn continuously from the reactor materials during what appeared to be the onset of serpentinization. These results support the hypothesis that formate may have been delivered directly to a branch of an emerging acetyl coenzyme-A pathway, thus obviating the need for the very first hydrogenation of CO2 to be made in a hydrothermal mound. Another feed to early metabolism could have been methane, likely mostly leached from primary CH4 present in the original Hadean crust or emanating from the mantle. That a small volume of methane was produced sporadically from the 13CO2-feed, perhaps from transient occlusions, echoes the mixed results and interpretations from other laboratories. As serpentinization and hydrothermal leaching can occur wherever an ocean convects within anhydrous olivine- and sulfide-rich crust, these results may be generalized to other wet rocky planets and moons in our solar system and beyond.
Collapse
Affiliation(s)
- Lauren M White
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
- Department of Chemistry and Biochemistry, University of California at Santa Barbara, Santa Barbara, California
- Project Systems Engineering, Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Takazo Shibuya
- Department of Subsurface Geobiological Analysis and Research (D-SUGAR), Project Team for Development of New-generation Research Protocol for Submarine Resources, and Research and Development (RandD), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan
- Research and Development (RandD) Center for Submarine Resources, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan
| | - Steven D Vance
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Lance E Christensen
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Rohit Bhartia
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Richard Kidd
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Adam Hoffmann
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Galen D Stucky
- Department of Chemistry and Biochemistry, University of California at Santa Barbara, Santa Barbara, California
- Materials Department, University of California at Santa Barbara, Santa Barbara, California
| | - Isik Kanik
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Michael J Russell
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| |
Collapse
|
4
|
Wilks JM, Chen F, Clark BC, Schneegurt MA. Bacterial Growth in Saturated and Eutectic Solutions of Magnesium Sulphate and Potassium Chlorate with Relevance to Mars and the Ocean Worlds. INTERNATIONAL JOURNAL OF ASTROBIOLOGY 2019; 18:502-509. [PMID: 33776587 PMCID: PMC7992186 DOI: 10.1017/s1473550418000502] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Liquid water on Mars might be created by deliquescence of hygroscopic salts or by permafrost melts, both potentially forming saturated brines. Freezing point depression allows these heavy brines to remain liquid in the near-surface environment for extended periods, perhaps as eutectic solutions, at the lowest temperatures and highest salt concentrations where ices and precipitates do not form. Perchlorate and chlorate salts and iron sulfate form brines with low eutectic temperatures and may persist under Mars near-surface conditions, but are chemically harsh at high concentrations and were expected to be incompatible with life, while brines of common sulfate salts on Mars may be more suitable for microbial growth. Microbial growth in saturated brines also may be relevant beyond Mars, to the oceans of Ceres, Enceladus, Europa and Pluto. We have previously shown strong growth of salinotolerant bacteria in media containing 2 M MgSO4 heptahydrate (~50% w/v) at 25 °C. Here we extend those observations to bacterial isolates from Basque Lake, BC and Hot Lake, WA, that grow well in saturated MgSO4 medium (67%) at 25 °C and in 50% MgSO4 medium at 4 °C (56% would be saturated). Psychrotolerant, salinotolerant microbes isolated from Basque Lake soils included Halomonas and Marinococcus, which were identified by 16S rRNA gene sequencing and characterized phenetically. Eutectic liquid medium constituted by 43% MgSO4 at -4 °C supported copious growth of these psychrotolerant Halomonas isolates, among others. Bacterial isolates also grew well at the eutectic for K chlorate (3% at -3 °C). Survival and growth in eutectic solutions increases the possibility that microbes contaminating spacecraft pose a contamination risk to Mars. The cold brines of sulfate and (per)chlorate salts that may form at times on Mars through deliquescence or permafrost melt have now been demonstrated to be suitable microbial habitats, should appropriate nutrients be available and dormant cells become vegetative.
Collapse
Affiliation(s)
- Jonathan M. Wilks
- Department of Biological Sciences, Wichita State University, Wichita, KS
| | - Fei Chen
- Planetary Protection Group, Jet Propulsion Laboratory, Pasadena CA
| | | | - Mark A. Schneegurt
- Department of Biological Sciences, Wichita State University, Wichita, KS
| |
Collapse
|
5
|
Yung YL, Chen P, Nealson K, Atreya S, Beckett P, Blank JG, Ehlmann B, Eiler J, Etiope G, Ferry JG, Forget F, Gao P, Hu R, Kleinböhl A, Klusman R, Lefèvre F, Miller C, Mischna M, Mumma M, Newman S, Oehler D, Okumura M, Oremland R, Orphan V, Popa R, Russell M, Shen L, Sherwood Lollar B, Staehle R, Stamenković V, Stolper D, Templeton A, Vandaele AC, Viscardy S, Webster CR, Wennberg PO, Wong ML, Worden J. Methane on Mars and Habitability: Challenges and Responses. ASTROBIOLOGY 2018; 18:1221-1242. [PMID: 30234380 PMCID: PMC6205098 DOI: 10.1089/ast.2018.1917] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2018] [Accepted: 06/12/2018] [Indexed: 05/05/2023]
Abstract
Recent measurements of methane (CH4) by the Mars Science Laboratory (MSL) now confront us with robust data that demand interpretation. Thus far, the MSL data have revealed a baseline level of CH4 (∼0.4 parts per billion by volume [ppbv]), with seasonal variations, as well as greatly enhanced spikes of CH4 with peak abundances of ∼7 ppbv. What do these CH4 revelations with drastically different abundances and temporal signatures represent in terms of interior geochemical processes, or is martian CH4 a biosignature? Discerning how CH4 generation occurs on Mars may shed light on the potential habitability of Mars. There is no evidence of life on the surface of Mars today, but microbes might reside beneath the surface. In this case, the carbon flux represented by CH4 would serve as a link between a putative subterranean biosphere on Mars and what we can measure above the surface. Alternatively, CH4 records modern geochemical activity. Here we ask the fundamental question: how active is Mars, geochemically and/or biologically? In this article, we examine geological, geochemical, and biogeochemical processes related to our overarching question. The martian atmosphere and surface are an overwhelmingly oxidizing environment, and life requires pairing of electron donors and electron acceptors, that is, redox gradients, as an essential source of energy. Therefore, a fundamental and critical question regarding the possibility of life on Mars is, "Where can we find redox gradients as energy sources for life on Mars?" Hence, regardless of the pathway that generates CH4 on Mars, the presence of CH4, a reduced species in an oxidant-rich environment, suggests the possibility of redox gradients supporting life and habitability on Mars. Recent missions such as ExoMars Trace Gas Orbiter may provide mapping of the global distribution of CH4. To discriminate between abiotic and biotic sources of CH4 on Mars, future studies should use a series of diagnostic geochemical analyses, preferably performed below the ground or at the ground/atmosphere interface, including measurements of CH4 isotopes, methane/ethane ratios, H2 gas concentration, and species such as acetic acid. Advances in the fields of Mars exploration and instrumentation will be driven, augmented, and supported by an improved understanding of atmospheric chemistry and dynamics, deep subsurface biogeochemistry, astrobiology, planetary geology, and geophysics. Future Mars exploration programs will have to expand the integration of complementary areas of expertise to generate synergistic and innovative ideas to realize breakthroughs in advancing our understanding of the potential of life and habitable conditions having existed on Mars. In this spirit, we conducted a set of interdisciplinary workshops. From this series has emerged a vision of technological, theoretical, and methodological innovations to explore the martian subsurface and to enhance spatial tracking of key volatiles, such as CH4.
Collapse
Affiliation(s)
- Yuk L. Yung
- California Institute of Technology, Pasadena, California
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Pin Chen
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | | | | | | | - Jennifer G. Blank
- NASA Ames Research Center, Blue Marble Space Institute of Science, Mountain View, California
| | - Bethany Ehlmann
- California Institute of Technology, Pasadena, California
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - John Eiler
- California Institute of Technology, Pasadena, California
| | - Giuseppe Etiope
- Istituto Nazionale di Geofisica e Vulcanologia, Rome, Italy
- Faculty of Environmental Science and Engineering, Babes-Bolyai University, Cluj-Napoca, Romania
| | - James G. Ferry
- The Pennsylvania State University, University Park, Pennsylvania
| | - Francois Forget
- Laboratoire de Météorologie Dynamique, Institut Pierre Simon Laplace, CNRS, Paris, France
| | - Peter Gao
- University of California, Berkeley, California
| | - Renyu Hu
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Armin Kleinböhl
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | | | - Franck Lefèvre
- Laboratoire Atmospheres, Milieux, Observations Spatiales (LATMOS), IPSL, Paris, France
| | - Charles Miller
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Michael Mischna
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Michael Mumma
- NASA Goddard Space Flight Center, Greenbelt, Maryland
| | - Sally Newman
- California Institute of Technology, Pasadena, California
| | | | | | | | | | - Radu Popa
- University of Southern California, Los Angeles, California
| | - Michael Russell
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Linhan Shen
- California Institute of Technology, Pasadena, California
| | | | - Robert Staehle
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Vlada Stamenković
- California Institute of Technology, Pasadena, California
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | | | | | - Ann C. Vandaele
- The Royal Belgian Institute for Space Aeronomy (BIRA-IASB), Brussels, Belgium
| | - Sébastien Viscardy
- The Royal Belgian Institute for Space Aeronomy (BIRA-IASB), Brussels, Belgium
| | - Christopher R. Webster
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | | | | | - John Worden
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| |
Collapse
|
6
|
Oehler DZ, Etiope G. Methane Seepage on Mars: Where to Look and Why. ASTROBIOLOGY 2017; 17:1233-1264. [PMID: 28771029 PMCID: PMC5730060 DOI: 10.1089/ast.2017.1657] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2017] [Accepted: 05/14/2017] [Indexed: 05/09/2023]
Abstract
Methane on Mars is a topic of special interest because of its potential association with microbial life. The variable detections of methane by the Curiosity rover, orbiters, and terrestrial telescopes, coupled with methane's short lifetime in the martian atmosphere, may imply an active gas source in the planet's subsurface, with migration and surface emission processes similar to those known on Earth as "gas seepage." Here, we review the variety of subsurface processes that could result in methane seepage on Mars. Such methane could originate from abiotic chemical reactions, thermogenic alteration of abiotic or biotic organic matter, and ancient or extant microbial metabolism. These processes can occur over a wide range of temperatures, in both sedimentary and igneous rocks, and together they enhance the possibility that significant amounts of methane could have formed on early Mars. Methane seepage to the surface would occur preferentially along faults and fractures, through focused macro-seeps and/or diffuse microseepage exhalations. Our work highlights the types of features on Mars that could be associated with methane release, including mud-volcano-like mounds in Acidalia or Utopia; proposed ancient springs in Gusev Crater, Arabia Terra, and Valles Marineris; and rims of large impact craters. These could have been locations of past macro-seeps and may still emit methane today. Microseepage could occur through faults along the dichotomy or fractures such as those at Nili Fossae, Cerberus Fossae, the Argyre impact, and those produced in serpentinized rocks. Martian microseepage would be extremely difficult to detect remotely yet could constitute a significant gas source. We emphasize that the most definitive detection of methane seepage from different release candidates would be best provided by measurements performed in the ground or at the ground-atmosphere interface by landers or rovers and that the technology for such detection is currently available. Key Words: Mars-Methane-Seepage-Clathrate-Fischer-Tropsch-Serpentinization. Astrobiology 17, 1233-1264.
Collapse
Affiliation(s)
| | - Giuseppe Etiope
- Istituto Nazionale di Geofisica e Vulcanologia, Sezione Roma 2, Roma, Italy, and Faculty of Environmental Science and Engineering, Babes-Bolyai University, Cluj-Napoca, Romania
| |
Collapse
|