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Mustieles-Del-Ser P, Ruano-Gallego D, Parro V. Immunoanalytical Detection of Conserved Peptides: Refining the Universe of Biomarker Targets in Planetary Exploration. Anal Chem 2024; 96:4764-4773. [PMID: 38484023 DOI: 10.1021/acs.analchem.3c04165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/27/2024]
Abstract
Ancient peptides are remnants of early biochemistry that continue to play pivotal roles in current proteins. They are simple molecules yet complex enough to exhibit independent functions, being products of an evolved biochemistry at the interface of life and nonlife. Their adsorption to minerals may contribute to their stabilization and preservation over time. To investigate the feasibility of conserved peptide sequences and structures as target biomarkers for the search for life on Mars or other planetary bodies, we conducted a bioinformatics selection of well-conserved ancient peptides and produced polyclonal antibodies for their detection using fluorescence microarray immunoassays. Additionally, we explored how adsorbing peptides to Mars-representative minerals to form organomineral complexes could affect their immunological detection. The results demonstrated that the selected peptides exhibited autonomous folding, with some of them regaining their structure, even after denaturation. Furthermore, their cognate antibodies detected their conformational features regardless of amino acid sequences, thereby broadening the spectrum of target peptide sequences. While certain antibodies displayed unspecific binding to bare minerals, we validated that peptide-mineral complexes can be detected using sandwich immunoassays, as confirmed through desorption and competitive assays. Consequently, we conclude that the diversity of peptide sequences and structures suitable for use as target biomarkers in astrobiology can be constrained to a few well conserved sets, and they can be detected even if they are adsorbed in organomineral complexes.
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Affiliation(s)
- Pedro Mustieles-Del-Ser
- Centro de Astrobiología (CAB) INTA-CSIC, Torrejón de Ardoz 28850, Spain
- Departments of Physics and Mathematics, and Automatics, Universidad de Alcalá (UAH), Alcalá de Henares 28805, Spain
| | | | - Víctor Parro
- Centro de Astrobiología (CAB) INTA-CSIC, Torrejón de Ardoz 28850, Spain
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Moreno-Paz M, dos Santos Severino RS, Sánchez-García L, Manchado JM, García-Villadangos M, Aguirre J, Fernández-Martínez MA, Carrizo D, Kobayashi L, Dave A, Warren-Rhodes K, Davila A, Stoker CR, Glass B, Parro V. Life Detection and Microbial Biomarker Profiling with Signs of Life Detector-Life Detector Chip During a Mars Drilling Simulation Campaign in the Hyperarid Core of the Atacama Desert. ASTROBIOLOGY 2023; 23:1259-1283. [PMID: 37930382 PMCID: PMC10825288 DOI: 10.1089/ast.2021.0174] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2021] [Accepted: 07/02/2023] [Indexed: 11/07/2023]
Abstract
The low organic matter content in the hyperarid core of the Atacama Desert, together with abrupt temperature shifts and high ultraviolet radiation at its surface, makes this region one of the best terrestrial analogs of Mars and one of the best scenarios for testing instrumentation devoted to in situ planetary exploration. We have operated remotely and autonomously the SOLID-LDChip (Signs of Life Detector-Life Detector Chip), an antibody microarray-based sensor instrument, as part of a rover payload during the 2019 NASA Atacama Rover Astrobiology Drilling Studies (ARADS) Mars drilling simulation campaign. A robotic arm collected drilled cuttings down to 80 cm depth and loaded SOLID to process and assay them with LDChip for searching for molecular biomarkers. A remote science team received and analyzed telemetry data and LDChip results. The data revealed the presence of microbial markers from Proteobacteria, Acidobacteria, Bacteroidetes, Actinobacteria, Firmicutes, and Cyanobacteria to be relatively more abundant in the middle layer (40-50 cm). In addition, the detection of several proteins from nitrogen metabolism indicates a pivotal role in the system. These findings were corroborated and complemented on "returned samples" to the lab by a comprehensive analysis that included DNA sequencing, metaproteomics, and a metabolic reconstruction of the sampled area. Altogether, the results describe a relatively complex microbial community with members capable of nitrogen fixation and denitrification, sulfur oxidation and reduction, or triggering oxidative stress responses, among other traits. This remote operation demonstrated the high maturity of SOLID-LDChip as a powerful tool for remote in situ life detection for future missions in the Solar System.
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Affiliation(s)
- Mercedes Moreno-Paz
- Department of Molecular Evolution, Centro de Astrobiología (CAB), INTA-CSIC, Madrid, Spain
| | - Rita Sofia dos Santos Severino
- Department of Molecular Evolution, Centro de Astrobiología (CAB), INTA-CSIC, Madrid, Spain
- Departament of Física y Matemáticas y de Automática, University of Alcalá de Henares (UAH), Madrid, Spain
| | - Laura Sánchez-García
- Department of Molecular Evolution, Centro de Astrobiología (CAB), INTA-CSIC, Madrid, Spain
| | - Juan Manuel Manchado
- Department of Molecular Evolution, Centro de Astrobiología (CAB), INTA-CSIC, Madrid, Spain
| | | | - Jacobo Aguirre
- Department of Molecular Evolution, Centro de Astrobiología (CAB), INTA-CSIC, Madrid, Spain
| | - Miguel Angel Fernández-Martínez
- Department of Molecular Evolution, Centro de Astrobiología (CAB), INTA-CSIC, Madrid, Spain
- Department of Natural Resource Sciences, McGill University, Québec, Canada
| | - Daniel Carrizo
- Department of Molecular Evolution, Centro de Astrobiología (CAB), INTA-CSIC, Madrid, Spain
| | - Linda Kobayashi
- Space Science Division and Astrobiology Division, NASA Ames Research Center, Moffett Field, California, USA
| | - Arwen Dave
- Space Science Division and Astrobiology Division, NASA Ames Research Center, Moffett Field, California, USA
| | - Kim Warren-Rhodes
- Space Science Division and Astrobiology Division, NASA Ames Research Center, Moffett Field, California, USA
- Carl Sagan Center, SETI Institute, Mountain View, California, USA
| | - Alfonso Davila
- Space Science Division and Astrobiology Division, NASA Ames Research Center, Moffett Field, California, USA
| | - Carol R. Stoker
- Space Science Division and Astrobiology Division, NASA Ames Research Center, Moffett Field, California, USA
| | - Brian Glass
- Space Science Division and Astrobiology Division, NASA Ames Research Center, Moffett Field, California, USA
| | - Víctor Parro
- Department of Molecular Evolution, Centro de Astrobiología (CAB), INTA-CSIC, Madrid, Spain
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Russell FD, Visagie JC, Noll JL. Secretion of IL-6 by fibroblasts exposed to Australian honeys involves lipopolysaccharide and is independent of floral source. Sci Rep 2022; 12:16628. [PMID: 36198760 PMCID: PMC9534836 DOI: 10.1038/s41598-022-21130-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Accepted: 09/22/2022] [Indexed: 11/18/2022] Open
Abstract
Honey stimulates cellular secretion of cytokines, which has been attributed to activation of lipopolysaccharide (LPS)-dependent and LPS-independent pathways. The objective of this study was to identify whether LPS is present in Australian honey samples at levels that can stimulate interleukin-6 (IL-6) secretion by fibroblasts and whether it can transduce cell signalling by activating toll-like receptor 4 (TLR4). IL-6 was measured in culture media of fibroblasts exposed to honey for 24 h. LPS was detected in a 0.125 mg/mL solution of grey ironbark honey (0.61 ± 0.05 ng/g honey). TLR4 signalling was observed in RAW264.7 macrophages that were exposed to honey and this was prevented by preincubating the honey with the LPS-neutralising agent, polymyxin B. Australian Eucalyptus, Leptospermum and Cyathode honeys stimulated IL-6 secretion in cultured human dermal fibroblasts. To examine whether the response was dependent on floral source, fibroblasts were exposed to four different samples of grey ironbark honey obtained from Queensland and New South Wales, Australia. The magnitude of the cytokine response to these honeys was highly varied. We conclude that Australian honeys contain endotoxin at levels that can stimulate IL-6 secretion by fibroblasts and that signalling in macrophages involves TLR4 activation. The IL-6 secretory response was independent of floral source.
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Affiliation(s)
- Fraser D Russell
- Centre for Bioinnovation, University of the Sunshine Coast, Maroochydore DC, QLD, 4558, Australia. .,School of Health and Behavioural Sciences, University of the Sunshine Coast, Maroochydore DC, QLD, 4558, Australia.
| | - Jeanne C Visagie
- School of Health and Behavioural Sciences, University of the Sunshine Coast, Maroochydore DC, QLD, 4558, Australia
| | - Jamie L Noll
- School of Health and Behavioural Sciences, University of the Sunshine Coast, Maroochydore DC, QLD, 4558, Australia
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Billi D, Blanco Y, Ianneo A, Moreno-Paz M, Aguirre J, Baqué M, Moeller R, de Vera JP, Parro V. Mars-like UV Flux and Ionizing Radiation Differently Affect Biomarker Detectability in the Desert Cyanobacterium Chroococcidiopsis as Revealed by the Life Detector Chip Antibody Microarray. ASTROBIOLOGY 2022; 22:1199-1209. [PMID: 36194868 DOI: 10.1089/ast.2022.0013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
The effect of a Mars-like UV flux and γ-radiation on the detectability of biomarkers in dried cells of Chroococcidiopsis sp. CCMEE 029 was investigated using a fluorescence sandwich microarray immunoassay. The production of anti-Chroococcidiopsis antibodies allowed the immunoidentification of a reduced, though still detectable, signal in dried cells mixed with phyllosilicatic and sulfatic Mars regolith simulants after exposure to 6.8 × 105 kJ/m2 of a Mars-like UV flux. No signal was detected in dried cells that were not mixed with minerals after 1.4 × 105 kJ/m2. For γ-radiation (60Co), no detectable variations of the fluorescence signal occurred in dried cells exposed to 113 kGy compared to non-irradiated dried cells. Our results suggest that immunoassay-based techniques could be used to detect life tracers eventually present in the martian subsurface in freshly excavated materials only if shielded from solar UV. The high structural integrity of biomarkers irradiated with γ-radiation that mimics a dose accumulated in 13 Myr at 2 m depth from the martian surface has implications for the potential detectability of similar organic molecules/compounds by future life-detection missions such as the ExoMars Rosalind Franklin rover.
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Affiliation(s)
- Daniela Billi
- University of Rome Tor Vergata, Department of Biology, Rome, Italy
| | - Yolanda Blanco
- Centro de Astrobiología (CAB), CSIC-INTA, Department of Molecular Evolution, Torrejón de Ardoz, Madrid, Spain
| | - Andrea Ianneo
- University of Rome Tor Vergata, Department of Biology, Rome, Italy
| | - Mercedes Moreno-Paz
- Centro de Astrobiología (CAB), CSIC-INTA, Department of Molecular Evolution, Torrejón de Ardoz, Madrid, Spain
| | - Jacobo Aguirre
- Centro de Astrobiología (CAB), CSIC-INTA, Department of Molecular Evolution, Torrejón de Ardoz, Madrid, Spain
| | - Mickael Baqué
- German Aerospace Center (DLR), Institute of Planetary Research, Planetary Laboratories Department, Berlin, Germany
| | - Ralf Moeller
- German Aerospace Center (DLR), Institute of Aerospace Medicine, Radiation Biology Department, Cologne, Germany
| | - Jean-Pierre de Vera
- German Aerospace Center (DLR), Space Operations and Astronaut Training, Microgravity User Support Center, Cologne, Germany
| | - Victor Parro
- Centro de Astrobiología (CAB), CSIC-INTA, Department of Molecular Evolution, Torrejón de Ardoz, Madrid, Spain
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Pavlov AA, McLain HL, Glavin DP, Roussel A, Dwork In JP, Elsila JE, Yocum KM. Rapid Radiolytic Degradation of Amino Acids in the Martian Shallow Subsurface: Implications for the Search for Extinct Life. ASTROBIOLOGY 2022; 22:1099-1115. [PMID: 35749703 DOI: 10.1089/ast.2021.0166] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Amino acids are fundamental to life as we know them as the monomers of proteins and enzymes. They are also readily synthesized under a variety of plausible prebiotic conditions and are common in carbon-rich meteorites. Thus, they represent a reasonable class of organics to target in the search for prebiotic chemistry or chemical evidence of life on Mars. However, regardless of their origin, amino acids and other organic molecules present in near-surface regolith and rocks on Mars can be degraded by exposure to cosmic rays that can penetrate to a depth of a few meters. We exposed several pure amino acids in dry and hydrated silicate mixtures and in mixtures of silicates with perchlorate salts to gamma radiation at various temperatures and radiation doses representative of the martian near-subsurface. We found that irradiation of amino acids mixed with dry silica powder increased the rate of amino acid radiolysis, with the radiolysis constants of amino acids in silicate mixtures at least a factor of 10 larger compared with the radiolysis constants of amino acids alone. The addition of perchlorate salts to the silicate samples or hydration of silicate samples further accelerated the rate of amino acid destruction during irradiation and increased the radiolysis constants by a factor of ∼1.5. Our results suggest that even low-molecular-weight amino acids could degrade in just ∼20 million years in the top 10 cm of the martian surface regolith and rock, and even faster if the material contains elevated abundances of hydrated silicate minerals or perchlorates. We did not detect evidence of amino acid racemization after gamma radiation exposure of the samples, which indicates that the chirality of some surviving amino acids may still be preserved. Our experimental results suggest serious challenges for the search of ancient amino acids and other potential organic biosignatures in the top 2 m of the martian surface.
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Affiliation(s)
- Alexander A Pavlov
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, Maryland, USA
| | - Hannah L McLain
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, Maryland, USA
- Department of Physics, Catholic University of America, Washington, District of Columbia, USA
- Center for Research and Exploration in Space Science and Technology, NASA/GSFC, Greenbelt, Maryland, USA
| | - Daniel P Glavin
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, Maryland, USA
| | - Anaïs Roussel
- Department of Biology, Georgetown University, Washington, District of Columbia, USA
| | - Jason P Dwork In
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, Maryland, USA
| | - Jamie E Elsila
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, Maryland, USA
| | - Katarina M Yocum
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, Maryland, USA
- Department of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin, USA
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Bonales LJ, Muñoz-Iglesias V, Prieto-Ballesteros O, Mateo-Martí E. Preservation of glycine coordination compounds under a gamma radiation dose representative of natural mars radioactivity. Sci Rep 2022; 12:13677. [PMID: 35953504 PMCID: PMC9372174 DOI: 10.1038/s41598-022-17802-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Accepted: 07/31/2022] [Indexed: 11/09/2022] Open
Abstract
The Martian subsurface is more favorable for organic preservation than its surface because of the shielding effect of rocks from cosmic rays and UV radiation with increasing depth. Nevertheless, the natural radioactivity on Mars owing to U, Th, and K must be considered to study the possible extant and/or extinct life. Here, we demonstrate the importance of natural radiation on the amino acid glycine in two different chemical environments, GlyFeSO4 5H2O and GlyMgSO4 5H2O, which are coordination compounds considered relevant to Mars. The results show that after a 600 kGy dose of gamma radiation, glycine was more stable when it bonded to Mg in the GlyMgSO4 5H2O coordination compound, it was less stable when it bonded to Fe in the GlyFeSO4 5H2O compound. Studies on the effects of gamma radiation on preservation of organic molecules bound to minerals and other potential compounds on Mars are significantly important in the search for biosignatures.
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Affiliation(s)
- Laura J Bonales
- Departamento de Evolución Molecular, Spanish Centre for Astrobiology, (CAB-CSIC), Instituto Nacional de Técnica Aeroespacial (INTA), Carretera de Ajalvir km 4, Torrejón de Ardoz, 28850, Madrid, Spain.
| | - Victoria Muñoz-Iglesias
- Departamento de Evolución Molecular, Spanish Centre for Astrobiology, (CAB-CSIC), Instituto Nacional de Técnica Aeroespacial (INTA), Carretera de Ajalvir km 4, Torrejón de Ardoz, 28850, Madrid, Spain
- Departamento de Planetología y habitabilidad, Spanish Centre for Astrobiology, (CAB-CSIC), Instituto Nacional de Técnica Aeroespacial (INTA), Carretera de Ajalvir km 4, Torrejón de Ardoz, 28850, Madrid, Spain
| | - Olga Prieto-Ballesteros
- Departamento de Evolución Molecular, Spanish Centre for Astrobiology, (CAB-CSIC), Instituto Nacional de Técnica Aeroespacial (INTA), Carretera de Ajalvir km 4, Torrejón de Ardoz, 28850, Madrid, Spain
- Departamento de Planetología y habitabilidad, Spanish Centre for Astrobiology, (CAB-CSIC), Instituto Nacional de Técnica Aeroespacial (INTA), Carretera de Ajalvir km 4, Torrejón de Ardoz, 28850, Madrid, Spain
| | - Eva Mateo-Martí
- Departamento de Evolución Molecular, Spanish Centre for Astrobiology, (CAB-CSIC), Instituto Nacional de Técnica Aeroespacial (INTA), Carretera de Ajalvir km 4, Torrejón de Ardoz, 28850, Madrid, Spain
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7
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Elkenawy NM, Gomaa OM. Valorization of frying oil waste for biodetergent production using Serratia marcescens N2 and gamma irradiation assisted biorecovery. Microb Cell Fact 2022; 21:151. [PMID: 35907859 PMCID: PMC9338678 DOI: 10.1186/s12934-022-01877-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2022] [Accepted: 07/07/2022] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND The complexity, toxicity and abundance of frying oil waste (FOW) render it difficult to be degraded biologically. The aim of the present work was to valorize FOW and investigate the potential use of the produced biosurfactant by Serratia marcescens N2 (Whole Genome sequencing accession ID SPSG00000000) as a biodetergent. RESULTS Serratia marcescens N2 demonstrated efficient valorization of FOW, using 1% peptone, 20% FOW and 8% inoculum size. Gene annotation showed the presence of serrawettin synthetase indicating that the produced biosurfactant was serrawettin. Zeta potential and Fourier Transform Infrared (FTIR) spectroscopy indicate that the biosurfactant produced was a negatively charged lipopeptide. The biosurfactant reduced the surface tension of water from 72 to 25.7 mN/m; its emulsification index was 90%. The valorization started after 1 h of incubation and reached a maximum of 83.3%. Gamma radiation was used to increase the biosurfactant yield from 9.4 to 19.2 g/L for non-irradiated and 1000 Gy irradiated cultures, respectively. It was noted that the biorecovery took place immediately as opposed to overnight storage required in conventional biosurfactant recovery. Both chemical and functional characteristics of the radiation induced biosurfactant did not change at low doses. The produced biosurfactant was used to wash oil stain; the highest detergency reached was 87% at 60 °C under stirring conditions for 500 Gy gamma assisted biorecovery. Skin irritation tests performed on experimental mice showed no inflammation. CONCLUSION This study was able to obtain a skin friendly effective biodetergent from low worth FOW using Serratia marcescens N2 with 83% efficient valorization using only peptone in the growth media unlike previous studies using complex media. Gamma radiation was for the first time experimented to assist biosurfactant recovery and doubling the yield without affecting the efficiency.
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Affiliation(s)
- Nora M Elkenawy
- Drug Radiation Research Department, National Center for Radiation Research and Technology (NCRRT), Egyptian Atomic Energy Authority (EAEA), Cairo, Egypt.
| | - Ola M Gomaa
- Radiation Microbiology Department, National Center for Radiation Research and Technology (NCRRT), Egyptian Atomic Energy Authority (EAEA), Cairo, Egypt
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Velbel MA, Cockell CS, Glavin DP, Marty B, Regberg AB, Smith AL, Tosca NJ, Wadhwa M, Kminek G, Meyer MA, Beaty DW, Carrier BL, Haltigin T, Hays LE, Agee CB, Busemann H, Cavalazzi B, Debaille V, Grady MM, Hauber E, Hutzler A, McCubbin FM, Pratt LM, Smith CL, Summons RE, Swindle TD, Tait KT, Udry A, Usui T, Westall F, Zorzano MP. Planning Implications Related to Sterilization-Sensitive Science Investigations Associated with Mars Sample Return (MSR). ASTROBIOLOGY 2022; 22:S112-S164. [PMID: 34904892 DOI: 10.1089/ast.2021.0113] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
The NASA/ESA Mars Sample Return (MSR) Campaign seeks to establish whether life on Mars existed where and when environmental conditions allowed. Laboratory measurements on the returned samples are useful if what is measured is evidence of phenomena on Mars rather than of the effects of sterilization conditions. This report establishes that there are categories of measurements that can be fruitful despite sample sterilization and other categories that cannot. Sterilization kills living microorganisms and inactivates complex biological structures by breaking chemical bonds. Sterilization has similar effects on chemical bonds in non-biological compounds, including abiotic or pre-biotic reduced carbon compounds, hydrous minerals, and hydrous amorphous solids. We considered the sterilization effects of applying dry heat under two specific temperature-time regimes and the effects of γ-irradiation. Many measurements of volatile-rich materials are sterilization sensitive-they will be compromised by either dehydration or radiolysis upon sterilization. Dry-heat sterilization and γ-irradiation differ somewhat in their effects but affect the same chemical elements. Sterilization-sensitive measurements include the abundances and oxidation-reduction (redox) states of redox-sensitive elements, and isotope abundances and ratios of most of them. All organic molecules, and most minerals and naturally occurring amorphous materials that formed under habitable conditions, contain at least one redox-sensitive element. Thus, sterilization-sensitive evidence about ancient life on Mars and its relationship to its ancient environment will be severely compromised if the samples collected by Mars 2020 rover Perseverance cannot be analyzed in an unsterilized condition. To ensure that sterilization-sensitive measurements can be made even on samples deemed unsafe for unsterilized release from containment, contingency instruments in addition to those required for curation, time-sensitive science, and the Sample Safety Assessment Protocol would need to be added to the Sample Receiving Facility (SRF). Targeted investigations using analogs of MSR Campaign-relevant returned-sample types should be undertaken to fill knowledge gaps about sterilization effects on important scientific measurements, especially if the sterilization regimens eventually chosen are different from those considered in this report. Executive Summary A high priority of the planned NASA/ESA Mars Sample Return Campaign is to establish whether life on Mars exists or existed where and when allowed by paleoenvironmental conditions. To answer these questions from analyses of the returned samples would require measurement of many different properties and characteristics by multiple and diverse instruments. Planetary Protection requirements may determine that unsterilized subsamples cannot be safely released to non-Biosafety Level-4 (BSL-4) terrestrial laboratories. Consequently, it is necessary to determine what, if any, are the negative effects that sterilization might have on sample integrity, specifically the fidelity of the subsample properties that are to be measured. Sample properties that do not survive sterilization intact should be measured on unsterilized subsamples, and the Sample Receiving Facility (SRF) should support such measurements. This report considers the effects that sterilization of subsamples might have on the science goals of the MSR Campaign. It assesses how the consequences of sterilization affect the scientific usefulness of the subsamples and hence our ability to conduct high-quality science investigations. We consider the sterilization effects of (a) the application of dry heat under two temperature-time regimes (180°C for 3 hours; 250°C for 30 min) and (b) γ-irradiation (1 MGy), as provided to us by the NASA and ESA Planetary Protection Officers (PPOs). Measurements of many properties of volatile-rich materials are sterilization sensitive-they would be compromised by application of either sterilization mode to the subsample. Such materials include organic molecules, hydrous minerals (crystalline solids), and hydrous amorphous (non-crystalline) solids. Either proposed sterilization method would modify the abundances, isotopes, or oxidation-reduction (redox) states of the six most abundant chemical elements in biological molecules (i.e., carbon, hydrogen, nitrogen, oxygen, phosphorus, and sulphur, CHNOPS), and of other key redox-sensitive elements that include iron (Fe), other first-row transition elements (FRTE), and cerium (Ce). As a result of these modifications, such evidence of Mars' life, paleoenvironmental history, potential habitability, and potential biosignatures would be corrupted or destroyed. Modifications of the abundances of some noble gases in samples heated during sterilization would also reset scientifically important radioisotope geochronometers and atmospheric-evolution measurements. Sterilization is designed to render terminally inactive (kill) all living microorganisms and inactivate complex biological structures (including bacterial spores, viruses, and prions). Sterilization processes do so by breaking certain pre-sterilization chemical bonds (including strong C-C, C-O, C-N, and C-H bonds of predominantly covalent character, as well as weaker hydrogen and van der Waals bonds) and forming different bonds and compounds, disabling the biological function of the pre-sterilization chemical compound. The group finds the following: No sterilization process could destroy the viability of cells whilst still retaining molecular structures completely intact. This applies not only to the organic molecules of living organisms, but also to most organic molecular biosignatures of former life (molecular fossils). As a matter of biological principle, any sterilization process would result in the loss of biological and paleobiological information, because this is the mechanism by which sterilization is achieved. Thus, almost all life science investigations would be compromised by sterilizing the subsample by either mode. Sterilization by dry heat at the proposed temperatures would lead to changes in many of the minerals and amorphous solids that are most significant for the study of paleoenvironments, habitability, potential biosignatures, and the geologic context of life-science observations. Gamma-(γ-)irradiation at even sub-MGy doses induces radiolysis of water. The radiolysis products (e.g., free radicals) react with redox-sensitive chemical species of interest for the study of paleoenvironments, habitability, and potential biosignatures, thereby adversely affecting measurements of those species. Heat sterilization and radiation also have a negative effect on CHNOPS and redox-sensitive elements. MSPG2 was unable to identify with confidence any measurement of abundances or oxidation-reduction states of CHNOPS elements, other redox-sensitive elements (e.g., Fe and other FRTE; Ce), or their isotopes that would be affected by only one, but not both, of the considered sterilization methods. Measurements of many attributes of volatile-rich subsamples are sterilization sensitive to both heat and γ-irradiation. Such a measurement is not useful to Mars science if what remains in the subsample is evidence of sterilization conditions and effects instead of evidence of conditions on Mars. Most measurements relating to the detection of evidence for extant or extinct life are sterilization sensitive. Many measurements other than those for life-science seek to retrieve Mars' paleoenvironmental information from the abundances or oxidation-reduction states of CHNOPS elements, other redox-sensitive elements, or their isotopes (and some noble gases) in returned samples. Such measurements inform scientific interpretations of (paleo)atmosphere composition and evolution, (paleo)surface water origin and chemical evolution, potential (paleo)habitability, (paleo)groundwater-porewater solute chemistry, origin and evolution, potential biosignature preservation, metabolic element or isotope fractionation, and the geologic, geochronological, and geomorphic context of life-sciences observations. Most such measurements are also sterilization sensitive. The sterilization-sensitive attributes cannot be meaningfully measured in any such subsample that has been sterilized by heat or γ-irradiation. Unless such subsamples are deemed biohazard-safe for release to external laboratories in unsterilized form, all such measurements must be made on unsterilized samples in biocontainment. An SRF should have the capability to carry out scientific investigations that are sterilization-sensitive to both PPO-provided sterilization methods (Figure SE1). The following findings have been recognized in the Report. Full explanations of the background, scope, and justification precede the presentation of each Finding in the Section identified for that Finding. One or more Findings follow our assessment of previous work on the effects of each provided sterilization method on each of three broad categories of measurement types-biosignatures of extant or ancient life, geological evidence of paleoenvironmental conditions, and gases. Findings are designated Major if they explicitly refer to both PPO-provided sterilization methods or have specific implications for the functionalities that need to be supported within an SRF. FINDING SS-1: More than half of the measurements described by iMOST for investigation into the presence of (mostly molecular) biosignatures (iMOST Objectives 2.1, 2.2 and 2.3) in returned martian samples are sterilization-sensitive and therefore cannot be performed with acceptable analytical precision or sensitivity on subsamples sterilized either by heat or by γ-irradiation at the sterilization parameters supplied to MSPG2. That proportion rises to 86% of the measurements specific to the investigation of extant or recent life (iMOST Objective 2.3) (see Section 2.5). This Finding supersedes Finding #4 of the MSPG Science in Containment report (MSPG, 2019). FINDING SS-2: Almost three quarters (115 out of 160; 72%) of the measurements described by iMOST for science investigations not associated with Objective 2 but associated with Objectives concerning geological phenomena that include past interactions with the hydrosphere (Objectives 1 and 3) and the atmosphere (Objective 4) are sterilization-tolerant and therefore can (generally) be performed with acceptable analytical precision or sensitivity on subsamples sterilized either by heat or by γ-irradiation at the sterilization parameters supplied to MSPG2 (see Section 2.5). This Finding supports Finding #6 of the MSPG Science in Containment report (MSPG, 2019). MSPG2 endorses the previously proposed strategy of conducting as many measurements as possible outside the SRF where the option exists. FINDING SS-3: Suggested strategies for investigating the potential for extant life in returned martian samples lie in understanding biosignatures and, more importantly, the presence of nucleic acid structures (DNA/RNA) and possible agnostic functionally similar information-bearing polymers. A crucial observation is that exposure of microorganisms to temperatures associated with sterilization above those typical of a habitable surface or subsurface environment results in a loss of biological information. If extant life is a target for subsample analysis, sterilization of material via dry heat would likely compromise any such analysis (see Section 3.2). FINDING SS-4: Suggested strategies for investigating the potential for extant life in returned martian samples lie in understanding biosignatures, including the presence of nucleic acid structures (DNA/RNA) and possible agnostic functionally similar information-bearing polymers. A crucial observation is that exposure of microorganisms to γ-radiation results in a loss of biological information through molecular damage and/or destruction. If extant life is a target for subsample analysis, sterilization of material via γ-radiation would likely compromise any such analysis (see Section 3.3). FINDING SS-5: Suggested strategies for investigating biomolecules in returned martian samples lie in detection of a variety of complex molecules, including peptides, proteins, DNA (deoxyribonucleic acid) and RNA (ribonucleic acid), as well as compounds associated with cell membranes such as lipids, sterols, and fatty acids and their geologically stable reaction products (hopanes, steranes, etc.) and possible agnostic functionally similar information-bearing polymers. Exposure to temperatures above MSR Campaign-Level Requirements for sample temperature, up to and including sterilization temperatures, results in a loss of biological information. If the presence of biosignatures is a target for subsample analysis, sterilization of material via dry heat would likely compromise any such analysis (see Section 4.2). FINDING SS-6: Suggested strategies for investigating biomolecules in returned martian samples lie in detection of a variety of complex molecules, including peptides, proteins, DNA (deoxyribonucleic acid) and RNA (ribonucleic acid), and compounds associated with cell membranes such as lipids, sterols and fatty acids and their geologically stable reaction products (hopanes, steranes, etc.) and possible agnostic functionally similar information-bearing polymers. Exposure to radiation results in a loss of biological information. If the presence of biosignatures is a target for subsample analysis, sterilization of material via γ-irradiation would likely compromise any such analysis (see Section 4.3). [Figure: see text] MAJOR FINDING SS-7: The use of heat or γ-irradiation sterilization should be avoided for subsamples intended to be used for organic biosignature investigations (for extinct or extant life). Studies of organic molecules from extinct or extant life (either indigenous or contaminants, viable or dead cells) or even some organic molecules derived from abiotic chemistry cannot credibly be done on subsamples that have been sterilized by any means. The concentrations of amino acids and other reduced organic biosignatures in the returned martian samples may also be so low that additional heat and/or γ-irradiation sterilization would reduce their concentrations to undetectable levels. It is a very high priority that these experiments be done on unsterilized subsamples inside containment (see Section 4.4). FINDING SS-8: Solvent extraction and acid hydrolysis at ∼100°C of unsterilized martian samples will inactivate any biopolymers in the extract and would not require additional heat or radiation treatment for the subsamples to be rendered sterile. Hydrolyzed extracts should be safe for analysis of soluble free organic molecules outside containment and may provide useful information about their origin for biohazard assessments; this type of approach, if approved, is strongly preferred and endorsed (see Section 4.4). FINDING SS-9: Minerals and amorphous materials formed by low temperature processes on Mars are highly sensitive to thermal alteration, which leads to irreversible changes in composition and/or structure when heated. Exposure to temperatures above MSR Campaign-Level Requirements for sample temperature, up to and including sterilization temperatures, has the potential to alter them from their as-received state. Sterilization by dry heat at the proposed sterilization temperatures would lead to changes in many of the minerals that are most significant for the study of paleoenvironments, habitability, and potential biosignatures or biosignature hosts. It is crucial that the returned samples are not heated to temperatures above which mineral transitions occur (see Section 5.3). FINDING SS-10: Crystal structure, major and non-volatile minor element abundances, and stoichiometric compositions of minerals are unaffected by γ-irradiation of up to 0.3-1 MGy, but crystal structures are completely destroyed at 130 MGy. Measurements of these specific properties cannot be acquired from subsamples γ-irradiated at the notional 1 MGy dose-they are sterilization-sensitive (see Section 5.4). FINDING SS-11: Sterilization by γ-irradiation (even at sub-MGy doses) results in significant changes to the redox state of elements bound within a mineral lattice. Redox-sensitive elements include Fe and other first-row transition elements (FRTE) as well as C, H, N, O, P and S. Almost all minerals and naturally occurring amorphous materials that formed under habitable conditions, including the ambient paleotemperatures of Mars' surface or shallow subsurface, contain at least one of these redox-sensitive elements. Therefore, measurements and investigations of the listed properties of such geological materials are sterilization sensitive and should not be performed on γ-irradiated subsamples (see Section 5.4). FINDING SS-12: A significant fraction of investigations that focus on high-temperature magmatic and impact-related processes, their chronology, and the chronology of Mars' geophysical evolution are sterilization-tolerant. While there may be a few analyses involved in such investigations that could be affected to some degree by heat sterilization, most of these analyses would not be affected by sterilization involving γ-irradiation (see Section 5.6). MAJOR FINDING SS-13: Scientific investigations of materials containing hydrous or otherwise volatile-rich minerals and/or X-ray amorphous materials that formed or were naturally modified at low (Mars surface-/near-surface) temperature are sterilization-sensitive in that they would be compromised by changes in the abundances, redox states, and isotopes of CHNOPS and other volatiles (e.g., noble gases for chronometry), FRTE, and Ce, and cannot be performed on subsamples that have been sterilized by either dry heat or γ-irradiation (see Section 5.7). MAJOR FINDING SS-14: It would be far preferable to work on sterilized gas samples outside of containment, if the technical issues can all be worked out, than to build and operate a large gas chemistry laboratory inside containment. Depending on their reactivity (or inertness), gases extracted from sample tubes could be sterilized by dry heat or γ-irradiation and analyzed outside containment. Alternatively, gas samples could be filtered through an inert grid and the filtered gas analyzed outside containment (see Section 6.5). MAJOR FINDING SS-15: It is fundamental to the campaign-level science objectives of the Mars Sample Return Campaign that the SRF support characterization of samples returned from Mars that contain organic matter and/or minerals formed under habitable conditions that include the ambient paleotemperatures of Mars' surface or subsurface (<∼200°C)-such as most clays, sulfates, and carbonates-in laboratories on Earth in their as-received-at-the-SRF condition (see Section 7.1). MAJOR FINDING SS-16: The search for any category of potential biosignature would be adversely affected by either of the proposed sterilization methods (see Section 7.1). MAJOR FINDING SS-17: Carbon, hydrogen, nitrogen, oxygen, sulfur, phosphorus, and other volatiles would be released from a subsample during the sterilization step. The heat and γ-ray sterilization chambers should be able to monitor weight loss from the subsample during sterilization. Any gases produced in the sample headspace and sterilization chamber during sterilization should be captured and contained for future analyses of the chemical and stable isotopic compositions of the evolved elements and compounds for all sterilized subsamples to characterize and document fully any sterilization-induced alteration and thereby recover some important information that would otherwise be lost (see Section 7.2). This report shows that most of the sterilization-sensitive iMOST measurement types are among either the iMOST objectives for life detection and life characterization (half or more of the measurements for life-science sub-objectives are critically sterilization sensitive) or the iMOST objectives for inferring paleoenvironments, habitability, preservation of potential biosignatures, and the geologic context of life-science observations (nearly half of the measurements for sub-objectives involving geological environments, habitability, potential biosignature preservation, and gases/volatiles are critically sterilization sensitive) (Table 2; see Beaty et al., 2019 for the full lists of iMOST objectives, goals, investigations, and sample measurement types). Sterilization-sensitive science about ancient life on Mars and its relationship to its ancient environment will be severely impaired or lost if the samples collected by Perseverance cannot be analyzed in an unsterilized condition. Summary: ○The SRF should have the capability to carry out or otherwise support scientific investigations that are sensitive to both PPO-provided sterilization methods. ○Measurements of most life-sciences and habitability-related (paleoenvironmental) phenomena are sensitive to both PPO-provided sterilization modes. (Major Finding SS-7, SS-15, SS-16 and Finding SS-1, SS-3, SS-4, SS-5, SS-6, SS-9, SS-11, SS-13) If subsamples for sterilization-sensitive measurement cannot be deemed safe for release, then additional contingency analytical capabilities are needed in the SRF to complete MSR Campaign measurements of sterilization-sensitive sample properties on unsterilized samples in containment (Figure SE1, below). ○Measurements of high-temperature (low-volatile) phenomena are tolerant of both PPO-provided sterilization modes (Finding SS-12). Subsamples for such measurements may be sterilized and released to laboratories outside containment without compromising the scientific value of the measurements. ○Capturing, transporting, and analyzing gases is important and will require careful design of apparatus. Doing so for volatiles present as headspace gases and a dedicated atmosphere sample will enable important atmospheric science (Major Finding SS-14). Similarly, capturing and analyzing gases evolved during subsample sterilization (i.e., gas from the sterilization chamber) would compensate for some sterilization-induced loss of science data from volatile-rich solid (geological) subsamples (Finding SS-14, SS-17; other options incl. SS-8).
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Affiliation(s)
- Michael A Velbel
- Michigan State University, Earth and Environmental Sciences, East Lansing, Michigan, USA
- Smithsonian Institution, Department of Mineral Sciences, National Museum of Natural History, Washington, DC, USA
| | - Charles S Cockell
- University of Edinburgh, Centre for Astrobiology, School of Physics and Astronomy, Edinburgh, UK
| | - Daniel P Glavin
- NASA Goddard Space Flight Center, Solar System Exploration Division, Greenbelt, Maryland, USA
| | | | - Aaron B Regberg
- NASA Johnson Space Center, Astromaterials Research and Exploration Science Division, Houston, Texas, USA
| | - Alvin L Smith
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | - Nicholas J Tosca
- University of Cambridge, Department of Earth Sciences, Cambridge, UK
| | - Meenakshi Wadhwa
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
- Arizona State University, Tempe, Arizona, USA
| | | | - Michael A Meyer
- NASA Headquarters, Mars Sample Return Program, Washington, DC, USA
| | - David W Beaty
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | - Brandi Lee Carrier
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | | | - Lindsay E Hays
- NASA Headquarters, Mars Sample Return Program, Washington, DC, USA
| | - Carl B Agee
- University of New Mexico, Institute of Meteoritics, Albuquerque, New Mexico, USA
| | - Henner Busemann
- ETH Zürich, Institute of Geochemistry and Petrology, Zürich, Switzerland
| | - Barbara Cavalazzi
- Università di Bologna, Dipartimento di Scienze Biologiche, Geologiche e Ambientali, Bologna, Italy
| | | | | | - Ernst Hauber
- German Aerospace Center (DLR), Institute of Planetary Research, Berlin, Germany
| | | | - Francis M McCubbin
- NASA Johnson Space Center, Astromaterials Research and Exploration Science Division, Houston, Texas, USA
| | - Lisa M Pratt
- Indiana University Bloomington, Earth and Atmospheric Sciences, Bloomington, Indiana, USA
| | - Caroline L Smith
- Natural History Museum, Department of Earth Sciences, London, UK
- University of Glasgow, School of Geographical and Earth Sciences, Glasgow, UK
| | - Roger E Summons
- Massachusetts Institute of Technology, Earth, Atmospheric and Planetary Sciences, Cambridge, Massachusetts, USA
| | - Timothy D Swindle
- University of Arizona, Lunar and Planetary Laboratory, Tucson, Arizona, USA
| | - Kimberly T Tait
- Royal Ontario Museum, Department of Natural History, Toronto, Ontario, Canada
| | - Arya Udry
- University of Nevada Las Vegas, Las Vegas, Nevada, USA
| | - Tomohiro Usui
- Japan Aerospace Exploration Agency (JAXA), Institute of Space and Astronautical Science (ISAS), Chofu, Tokyo, Japan
| | - Frances Westall
- Centre National de la Recherche Scientifique (CNRS), Centre de Biophysique Moléculaire, Orléans, France
| | - Maria-Paz Zorzano
- Centro de Astrobiologia (CSIC-INTA), Torrejon de Ardoz, Spain
- University of Aberdeen, Department of Planetary Sciences, School of Geosciences, King's College, Aberdeen, UK
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9
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Massa S, Pagliarello R, Cemmi A, Di Sarcina I, Bombarely A, Demurtas OC, Diretto G, Paolini F, Petzold HE, Bliek M, Bennici E, Del Fiore A, De Rossi P, Spelt C, Koes R, Quattrocchio F, Benvenuto E. Modifying Anthocyanins Biosynthesis in Tomato Hairy Roots: A Test Bed for Plant Resistance to Ionizing Radiation and Antioxidant Properties in Space. FRONTIERS IN PLANT SCIENCE 2022; 13:830931. [PMID: 35283922 PMCID: PMC8909381 DOI: 10.3389/fpls.2022.830931] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Accepted: 01/07/2022] [Indexed: 06/14/2023]
Abstract
Gene expression manipulation of specific metabolic pathways can be used to obtain bioaccumulation of valuable molecules and desired quality traits in plants. A single-gene approach to impact different traits would be greatly desirable in agrospace applications, where several aspects of plant physiology can be affected, influencing growth. In this work, MicroTom hairy root cultures expressing a MYB-like transcription factor that regulates the biosynthesis of anthocyanins in Petunia hybrida (PhAN4), were considered as a testbed for bio-fortified tomato whole plants aimed at agrospace applications. Ectopic expression of PhAN4 promoted biosynthesis of anthocyanins, allowing to profile 5 major derivatives of delphinidin and petunidin together with pelargonidin and malvidin-based anthocyanins, unusual in tomato. Consistent with PhAN4 features, transcriptomic profiling indicated upregulation of genes correlated to anthocyanin biosynthesis. Interestingly, a transcriptome reprogramming oriented to positive regulation of cell response to biotic, abiotic, and redox stimuli was evidenced. PhAN4 hairy root cultures showed the significant capability to counteract reactive oxygen species (ROS) accumulation and protein misfolding upon high-dose gamma irradiation, which is among the most potent pro-oxidant stress that can be encountered in space. These results may have significance in the engineering of whole tomato plants that can benefit space agriculture.
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Affiliation(s)
- Silvia Massa
- Department for Sustainability, Biotechnology and Agro-Industry Division - Biotec Laboratory, Italian National Agency for New Technologies, Energy and Sustainable Economic Development, Rome, Italy
| | - Riccardo Pagliarello
- Department for Sustainability, Biotechnology and Agro-Industry Division - Biotec Laboratory, Italian National Agency for New Technologies, Energy and Sustainable Economic Development, Rome, Italy
- Department of Agriculture and Forest Sciences, University of Tuscia, Viterbo, Italy
| | - Alessia Cemmi
- Fusion and Nuclear Safety Technologies Department, Italian National Agency for New Technologies, Energy and Sustainable Economic Development, Rome, Italy
| | - Ilaria Di Sarcina
- Fusion and Nuclear Safety Technologies Department, Italian National Agency for New Technologies, Energy and Sustainable Economic Development, Rome, Italy
| | | | - Olivia Costantina Demurtas
- Department for Sustainability, Biotechnology and Agro-Industry Division - Biotec Laboratory, Italian National Agency for New Technologies, Energy and Sustainable Economic Development, Rome, Italy
| | - Gianfranco Diretto
- Department for Sustainability, Biotechnology and Agro-Industry Division - Biotec Laboratory, Italian National Agency for New Technologies, Energy and Sustainable Economic Development, Rome, Italy
| | - Francesca Paolini
- 'Regina Elena' National Cancer Institute, HPV-UNIT, Department of Research, Advanced Diagnostic and Technological Innovation, Translational Research Functional Departmental Area, Rome, Italy
| | - H Earl Petzold
- School of Plants and Environmental Sciences, Virginia Tech, Blacksburg, VA, United States
| | - Mattijs Bliek
- Department of Plant Development and (Epi)Genetics, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, Netherlands
| | - Elisabetta Bennici
- Department for Sustainability, Biotechnology and Agro-Industry Division - Biotec Laboratory, Italian National Agency for New Technologies, Energy and Sustainable Economic Development, Rome, Italy
| | - Antonella Del Fiore
- Department for Sustainability, Biotechnology and Agro-Industry Division - Agrifood Sustainability, Quality, and Safety Laboratory, Italian National Agency for New Technologies, Energy and Sustainable Economic Development, Rome, Italy
| | - Patrizia De Rossi
- Energy Efficiency Unit Department - Northern Area Regions Laboratory, Casaccia Research Center, Italian National Agency for New Technologies, Energy and Sustainable Economic Development, Rome, Italy
| | - Cornelis Spelt
- Department of Plant Development and (Epi)Genetics, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, Netherlands
| | - Ronald Koes
- Department of Plant Development and (Epi)Genetics, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, Netherlands
| | - Francesca Quattrocchio
- Department of Plant Development and (Epi)Genetics, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, Netherlands
| | - Eugenio Benvenuto
- Department for Sustainability, Biotechnology and Agro-Industry Division - Biotec Laboratory, Italian National Agency for New Technologies, Energy and Sustainable Economic Development, Rome, Italy
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10
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Butts CT, Martin RW. Bayesian estimation of the hydroxyl radical diffusion coefficient at low temperature and high pressure from atomistic molecular dynamics. J Chem Phys 2021; 155:194504. [PMID: 34800943 DOI: 10.1063/5.0064995] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The hydroxyl radical is the primary reactive oxygen species produced by the radiolysis of water and is a significant source of radiation damage to living organisms. Mobility of the hydroxyl radical at low temperatures and/or high pressures is hence a potentially important factor in determining the challenges facing psychrophilic and/or barophilic organisms in high-radiation environments (e.g., ice-interface or undersea environments in which radiative heating is a potential heat and energy source). Here, we estimate the diffusion coefficient for the hydroxyl radical in aqueous solution using a hierarchical Bayesian model based on atomistic molecular dynamics trajectories in TIP4P/2005 water over a range of temperatures and pressures.
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Affiliation(s)
- Carter T Butts
- Departments of Sociology, Statistics, Computer Science, and EECS, University of California, Irvine, California 92697, USA
| | - Rachel W Martin
- Departments of Chemistry and Molecular Biology and Biochemistry, University of California, Irvine, California 92697, USA
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11
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Davila AF. Life on Mars: Independent Genesis or Common Ancestor? ASTROBIOLOGY 2021; 21:802-812. [PMID: 33848439 DOI: 10.1089/ast.2020.2397] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The possibility of biological transfer between planetary bodies is seldom factored into life detection strategies, although the actuality of such an event would have profound implications for how we interpret potential biosignatures found on other worlds. This article addresses the possibility of life on Mars in the context of a biological transfer and an independent genesis of life. The phylogenetic tree of life on Earth is used as a blueprint to interpret evidence of life and as a guideline to determine the likelihood that potential biosignatures could be expressed by martian organisms. Several transfer scenarios are considered, depending on the timing of transfer with respect to the evolution of life on Earth. The implications of each transfer scenario and an independent genesis of life on the biochemical nature of the resulting martian organisms are discussed. The analysis highlights how conceding the possibility of a biological transfer has practical implications for how we search for evidence of life, both in terms of the quality of potential biosignatures and the likelihood that certain biosignatures might be expressed. It is concluded that a degree of uncertainty on the origin of martian organisms might be unavoidable, particularly in the absence of a biochemical context.
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Affiliation(s)
- Alfonso F Davila
- NASA Ames Research Center, Exobiology Branch, Moffett Field, California, USA
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12
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Issaadi HM, Béni Z, Tóth T, Dékány M, Hsieh TJ, Balogh GT, Hunyadi A. Diversity-oriented synthesis through gamma radiolysis: Preparation of unusual ecdysteroid derivatives activating Akt and AMPK in skeletal muscle cells. Bioorg Chem 2021; 112:104951. [PMID: 34000705 DOI: 10.1016/j.bioorg.2021.104951] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2021] [Revised: 04/22/2021] [Accepted: 04/26/2021] [Indexed: 11/19/2022]
Abstract
Gamma-ray radiation is a unique way to induce chemical transformations of bioactive compounds. In the present study, we pursued this approach to the diversity-oriented synthesis of analogs of 20-hydroxyecdysone (20E), an abundant ecdysteroid with a range of beneficial, non-hormonal bioactivities in mammals including humans. Gamma irradiations of aqueous solutions of 20E were conducted either in N2- or N2O-saturated solutions. Centrifugal partition chromatography was used to fractionate crude resulting irradiated materials using a biphasic solvent system composed of tert-butyl alcohol - ethyl acetate - water (0.45:0.9:1, v/v/v) in ascending mode. Subsequently, the products were purified by RP-HPLC. Fourteen ecdysteroids, including five new compounds, were isolated, and their structure were elucidated by 1D and 2D NMR and HRMS. Compounds 2-4, 7, 9, 12 and 15 were tested for their capacity to increase the Akt- and AMPK-phosphorylation of C2C12 murine skeletal myotubes in vitro. The compounds were similarly active on Akt as their parent compound. Stachysterone B (7) and a new ring-rearranged compound (12) were more potent than 20E in activating AMPK, indicating a stronger cytoprotective effect. Our results demonstrate the use of gamma irradiation in expanding the chemical diversity of ecdysteroids to obtain new, unusual bioactive metabolites.
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Affiliation(s)
- Halima Meriem Issaadi
- Institute of Pharmacognosy, University of Szeged, Eötvös str. 6, 6726 Szeged, Hungary
| | - Zoltán Béni
- Spectroscopic Research, Gedeon Richter Plc., Gyömrői út 19-21, H-1103 Budapest, Hungary
| | - Tünde Tóth
- Department of Organic Chemistry and Technology, Budapest University of Technology and Economics, PO Box 91, H-1521 Budapest, Hungary; Institute for Energy Security and Environmental Safety, Centre for Energy Research, P.O. Box 49, H-1525 Budapest, Hungary
| | - Miklós Dékány
- Spectroscopic Research, Gedeon Richter Plc., Gyömrői út 19-21, H-1103 Budapest, Hungary
| | - Tusty-Jiuan Hsieh
- Graduate Institute of Medicine, Kaohsiung Medical University, Kaohsiung 807, Taiwan, ROC
| | - György Tibor Balogh
- Department of Chemical and Environmental Process Engineering, Budapest University of Technology and Economics, Budafoki út 8., H-1111 Budapest, Hungary; Faculty of Pharmacy, Department of Pharmacodynamics and Biopharmacy, University of Szeged, Eötvös utca 6., H-6720 Szeged, Hungary.
| | - Attila Hunyadi
- Institute of Pharmacognosy, University of Szeged, Eötvös str. 6, 6726 Szeged, Hungary; Interdisciplinary Centre for Natural Products, University of Szeged, Eötvös str. 6, 6720 Szeged, Hungary.
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13
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Fairén AG, Gómez-Elvira J, Briones C, Prieto-Ballesteros O, Rodríguez-Manfredi JA, López Heredero R, Belenguer T, Moral AG, Moreno-Paz M, Parro V. The Complex Molecules Detector (CMOLD): A Fluidic-Based Instrument Suite to Search for (Bio)chemical Complexity on Mars and Icy Moons. ASTROBIOLOGY 2020; 20:1076-1096. [PMID: 32856927 PMCID: PMC7116096 DOI: 10.1089/ast.2019.2167] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/13/2019] [Accepted: 06/01/2020] [Indexed: 06/11/2023]
Abstract
Organic chemistry is ubiquitous in the Solar System, and both Mars and a number of icy satellites of the outer Solar System show substantial promise for having hosted or hosting life. Here, we propose a novel astrobiologically focused instrument suite that could be included as scientific payload in future missions to Mars or the icy moons: the Complex Molecules Detector, or CMOLD. CMOLD is devoted to determining different levels of prebiotic/biotic chemical and structural targets following a chemically general approach (i.e., valid for both terrestrial and nonterrestrial life), as well as their compatibility with terrestrial life. CMOLD is based on a microfluidic block that distributes a liquid suspension sample to three instruments by using complementary technologies: (1) novel microscopic techniques for identifying ultrastructures and cell-like morphologies, (2) Raman spectroscopy for detecting universal intramolecular complexity that leads to biochemical functionality, and (3) bioaffinity-based systems (including antibodies and aptamers as capture probes) for finding life-related and nonlife-related molecular structures. We highlight our current developments to make this type of instruments flight-ready for upcoming Mars missions: the Raman spectrometer included in the science payload of the ESAs Rosalind Franklin rover (Raman Laser Spectrometer instrument) to be launched in 2022, and the biomarker detector that was included as payload in the NASA Icebreaker lander mission proposal (SOLID instrument). CMOLD is a robust solution that builds on the combination of three complementary, existing techniques to cover a wide spectrum of targets in the search for (bio)chemical complexity in the Solar System.
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Affiliation(s)
- Alberto G. Fairén
- Centro de Astrobiología (CSIC-INTA), Madrid, Spain
- Department of Astronomy, Cornell University, Ithaca New York, USA
| | - Javier Gómez-Elvira
- Payload & Space Science Department, Instituto Nacional de Técnica Aeroespacial (INTA), Madrid, Spain
| | | | | | | | - Raquel López Heredero
- Payload & Space Science Department, Instituto Nacional de Técnica Aeroespacial (INTA), Madrid, Spain
| | - Tomás Belenguer
- Payload & Space Science Department, Instituto Nacional de Técnica Aeroespacial (INTA), Madrid, Spain
| | - Andoni G. Moral
- Payload & Space Science Department, Instituto Nacional de Técnica Aeroespacial (INTA), Madrid, Spain
| | | | - Víctor Parro
- Centro de Astrobiología (CSIC-INTA), Madrid, Spain
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14
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Lezcano MÁ, Moreno-Paz M, Carrizo D, Prieto-Ballesteros O, Fernández-Martínez MÁ, Sánchez-García L, Blanco Y, Puente-Sánchez F, de Diego-Castilla G, García-Villadangos M, Fairén AG, Parro V. Biomarker Profiling of Microbial Mats in the Geothermal Band of Cerro Caliente, Deception Island (Antarctica): Life at the Edge of Heat and Cold. ASTROBIOLOGY 2019; 19:1490-1504. [PMID: 31339746 PMCID: PMC6918857 DOI: 10.1089/ast.2018.2004] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Substrate-atmosphere interfaces in Antarctic geothermal environments are hot-cold regions that constitute thin habitable niches for microorganisms with possible counterparts in ancient Mars. Cerro Caliente hill in Deception Island (active volcano in the South Shetland Islands) is affected by ascending hydrothermal fluids that form a band of warm substrates buffered by low air temperatures. We investigated the influence of temperature on the community structure and metabolism of three microbial mats collected along the geothermal band of Cerro Caliente registering 88°C, 8°C, and 2°C at the time of collection. High-throughput sequencing of small subunit ribosomal ribonucleic acid (SSU rRNA) genes and Life Detector Chip (LDChip) microarray immunoassays revealed different bacterial, archaeal, and eukaryotic composition in the three mats. The mat at 88°C showed the less diverse microbial community and a higher proportion of thermophiles (e.g., Thermales). In contrast, microbial communities in the mats at 2°C and 8°C showed relatively higher diversity and higher proportion of psychrophiles (e.g., Flavobacteriales). Despite this overall association, similar microbial structures at the phylum level (particularly the presence of Cyanobacteria) and certain hot- and cold-tolerant microorganisms were identified in the three mats. Daily thermal oscillations recorded in the substrate over the year (4.5-76°C) may explain the coexistence of microbial fingerprints with different thermal tolerances. Stable isotope composition also revealed metabolic differences among the microbial mats. Carbon isotopic ratios suggested the Calvin-Benson-Bassham cycle as the major pathway for carbon dioxide fixation in the mats at 2°C and 8°C, and the reductive tricarboxylic acid cycle and/or the 3-hydroxypropionate bicycle for the mat at 88°C, indicating different metabolisms as a function of the prevailing temperature of each mat. The comprehensive biomarker profile on the three microbial mats from Cerro Caliente contributes to unravel the diversity, composition, and metabolism in geothermal polar sites and highlights the relevance of geothermal-cold environments to create habitable niches with interest in other planetary environments.
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Affiliation(s)
- María Ángeles Lezcano
- Department of Molecular Evolution, Centro de Astrobiología (CSIC-INTA), Madrid, Spain
- Address correspondence to: María Ángeles Lezcano, Department of Molecular Evolution, Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Madrid 28850, Spain
| | - Mercedes Moreno-Paz
- Department of Molecular Evolution, Centro de Astrobiología (CSIC-INTA), Madrid, Spain
| | - Daniel Carrizo
- Department of Planetology and Habitability, Centro de Astrobiología (CSIC-INTA), Madrid, Spain
| | - Olga Prieto-Ballesteros
- Department of Planetology and Habitability, Centro de Astrobiología (CSIC-INTA), Madrid, Spain
| | | | - Laura Sánchez-García
- Department of Molecular Evolution, Centro de Astrobiología (CSIC-INTA), Madrid, Spain
| | - Yolanda Blanco
- Department of Molecular Evolution, Centro de Astrobiología (CSIC-INTA), Madrid, Spain
| | | | | | | | - Alberto G. Fairén
- Department of Planetology and Habitability, Centro de Astrobiología (CSIC-INTA), Madrid, Spain
- Department of Astronomy, Cornell University, Ithaca, New York, USA
| | - Víctor Parro
- Department of Molecular Evolution, Centro de Astrobiología (CSIC-INTA), Madrid, Spain
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15
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Microbial Markers Profile in Anaerobic Mars Analogue Environments Using the LDChip (Life Detector Chip) Antibody Microarray Core of the SOLID (Signs of Life Detector) Platform. Microorganisms 2019; 7:microorganisms7090365. [PMID: 31540500 PMCID: PMC6780502 DOI: 10.3390/microorganisms7090365] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2019] [Revised: 08/30/2019] [Accepted: 09/16/2019] [Indexed: 11/30/2022] Open
Abstract
One of the main objectives for astrobiology is to unravel and explore the habitability of environments beyond Earth, paying special attention to Mars. If the combined environmental stress factors on Mars are compatible with life or if they were less harsh in the past, to investigate the traces of past or present life is critical to understand its potential habitability. Essential for this research is the characterization of Mars analogue environments on Earth through the development of techniques for biomarker detection in them. Biosensing techniques based on fluorescence sandwich microarray immunoassays (FSMI) have shown to be a powerful tool to detect biosignatures and depict the microbial profiles of different environments. In this study, we described the microbial biomarker profile of five anoxic Mars analogues sites using the Life Detector Chip (LDChip), an antibody microarray for multiple microbial marker detection. Furthermore, we contributed to new targets by developing a new 26-polyclonal antibodies microarray using crude extracts from anaerobic sampling sites, halophilic microorganisms, and anaerobic isolates obtained in the framework of the European Mars Analogues for Space Exploration (MASE) project. The new subset of antibodies was characterized and implemented into a microarray platform (MASE-Chip) for microbial marker searching in salty and anaerobic environments.
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16
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Abstract
The existence of exoplanets orbiting low mass-stars is one of the most significant discoveries of our time. Especially intriguing to us is the possibility that Earth-sized exoplanets within a habitable zone might harbor life-forms that resemble our own RNA/DNA-based species. We further narrow this theoretical possibility with the following question: if alien life does indeed exist elsewhere, would extraterrestrial life be burdened with earthly diseases? Given that the chemistry of the universe is subject to specific rules, restraints, and predictable outcomes, we argue that cancer-signaling pathways might be programmed into the life cycle of habitable exoplanets. This hypothetical prediction is also based on evolutionary convergence, the repeated emergence of biological similarity that occurs when disparate life-forms adapt to comparable selection pressures. The possibility that mutations and nucleotide base rearrangements that drive cancer growth might be fixed in the chemical hardware of alien life provides us with the opportunity to wonder and consider the origins, evolution, and ubiquity of disease beyond Earth.
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Affiliation(s)
| | | | - Joerg R Leheste
- Epidemiology and Public Health, Minnesota College of Osteopathic Medicine, Gaylord, USA
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