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Zhou L, Lei Q, Guo J, Gao Y, Shi J, Yu H, Yin W, Cao J, Xiao B, Andreo J, Ettlinger R, Jeffrey Brinker C, Wuttke S, Zhu W. Long-term whole blood DNA preservation by cost-efficient cryosilicification. Nat Commun 2022; 13:6265. [PMID: 36270991 PMCID: PMC9587218 DOI: 10.1038/s41467-022-33759-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Accepted: 09/30/2022] [Indexed: 12/25/2022] Open
Abstract
Deoxyribonucleic acid (DNA) is the blueprint of life, and cost-effective methods for its long-term storage could have many potential benefits to society. Here we present the method of in situ cryosilicification of whole blood cells, which allows long-term preservation of DNA. Importantly, our straightforward approach is inexpensive, reliable, and yields cryosilicified samples that fulfill the essential criteria for safe, long-term DNA preservation, namely robustness against external stressors, such as radical oxygen species or ultraviolet radiation, and long-term stability in humid conditions at elevated temperatures. Our approach could enable the room temperature storage of genomic information in book-size format for more than one thousand years (thermally equivalent), costing only 0.5 $/person. Additionally, our demonstration of 3D-printed DNA banking artefacts, could potentially allow 'artificial fossilization'.
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Affiliation(s)
- Liang Zhou
- grid.79703.3a0000 0004 1764 3838MOE International Joint Research Laboratory on Synthetic Biology and Medicines, School of Biology and Biological Engineering, South China University of Technology, Guangzhou, 510006 P. R. China
| | - Qi Lei
- grid.79703.3a0000 0004 1764 3838MOE International Joint Research Laboratory on Synthetic Biology and Medicines, School of Biology and Biological Engineering, South China University of Technology, Guangzhou, 510006 P. R. China
| | - Jimin Guo
- grid.266832.b0000 0001 2188 8502Center for Micro-Engineered Materials and the Department of Chemical and Biological Engineering, The University of New Mexico, Albuquerque, NM 87131 USA
| | - Yuanyuan Gao
- grid.79703.3a0000 0004 1764 3838MOE International Joint Research Laboratory on Synthetic Biology and Medicines, School of Biology and Biological Engineering, South China University of Technology, Guangzhou, 510006 P. R. China
| | - Jianjun Shi
- grid.459319.30000 0001 0175 0741Science and Technology on Advanced Functional Composites Technology, Aerospace Research Institute of Materials & Processing Technology, Beijing, 100076 P. R. China
| | - Hong Yu
- grid.79703.3a0000 0004 1764 3838MOE International Joint Research Laboratory on Synthetic Biology and Medicines, School of Biology and Biological Engineering, South China University of Technology, Guangzhou, 510006 P. R. China
| | - Wenxiang Yin
- grid.79703.3a0000 0004 1764 3838MOE International Joint Research Laboratory on Synthetic Biology and Medicines, School of Biology and Biological Engineering, South China University of Technology, Guangzhou, 510006 P. R. China
| | - Jiangfan Cao
- grid.79703.3a0000 0004 1764 3838MOE International Joint Research Laboratory on Synthetic Biology and Medicines, School of Biology and Biological Engineering, South China University of Technology, Guangzhou, 510006 P. R. China
| | - Botao Xiao
- grid.79703.3a0000 0004 1764 3838MOE International Joint Research Laboratory on Synthetic Biology and Medicines, School of Biology and Biological Engineering, South China University of Technology, Guangzhou, 510006 P. R. China
| | - Jacopo Andreo
- grid.473251.60000 0004 6475 7301BCMaterials, Basque Center for Materials, UPV/EHU Science Park, 48940 Leioa, Spain
| | - Romy Ettlinger
- grid.11914.3c0000 0001 0721 1626School of Chemistry, University of St. Andrews, St. Andrews, United Kingdom
| | - C. Jeffrey Brinker
- grid.266832.b0000 0001 2188 8502Center for Micro-Engineered Materials and the Department of Chemical and Biological Engineering, The University of New Mexico, Albuquerque, NM 87131 USA
| | - Stefan Wuttke
- grid.473251.60000 0004 6475 7301BCMaterials, Basque Center for Materials, UPV/EHU Science Park, 48940 Leioa, Spain ,grid.424810.b0000 0004 0467 2314Ikerbasque, Basque Foundation for Science, Bilbao, Spain
| | - Wei Zhu
- grid.79703.3a0000 0004 1764 3838MOE International Joint Research Laboratory on Synthetic Biology and Medicines, School of Biology and Biological Engineering, South China University of Technology, Guangzhou, 510006 P. R. China
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Bennet D, Vo‐Dinh T, Zenhausern F. Current and emerging opportunities in biological medium‐based computing and digital data storage. NANO SELECT 2021. [DOI: 10.1002/nano.202100275] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Affiliation(s)
- Devasier Bennet
- Center for Applied NanoBioscience and Medicine College of Medicine Phoenix The University of Arizona Phoenix USA
| | - Tuan Vo‐Dinh
- Department of Biomedical Engineering Department of Chemistry Fitzpatrick Institute for Photonics Duke University Durham North Carolina USA
| | - Frederic Zenhausern
- Center for Applied NanoBioscience and Medicine College of Medicine Phoenix The University of Arizona Phoenix USA
- Department of Basic Medical Sciences College of Medicine Phoenix The University of Arizona Phoenix Arizona USA
- Department of Biomedical Engineering; and BIO5 Institute College of Engineering The University of Arizona Tucson Arizona USA
- School of Pharmaceutical Sciences University of Geneva Geneva Switzerland
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Hofman P, Dagher G, Laurent-Puig P, Marquette CH, Barlesi F, Bibeau F, Clément B. [Tumor banks and complex data management: Current and future challenges]. Ann Pathol 2019; 39:137-143. [PMID: 30819623 DOI: 10.1016/j.annpat.2019.01.017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2019] [Accepted: 01/30/2019] [Indexed: 11/17/2022]
Abstract
Tumor banks are asked to clinical and translationnal research project development in oncology. They strongly participate to the assessment, then to the validation of diagnostic, prognostic and predictive biomarkers. The progressive change of these structures leads to induce a professionalization of their functioning and to identify them as key actors in oncology by the stakeholders of the public and private worlds. The progresses made in biotechnologies and therapeutics are rapidly modifying the impact and the proper functioning of the biobanks. These latter are now facing different challenges, in particular for their sustainability. Among the major issues, the integration of the clinical and biological data becoming increasingly complex leads to urgently consider an optimization of the role of different biobanks in France. Their goal is to be an attractive counterpart face to the international competition. The purpose of this review is to briefly describe the current evolution of the biobanks, then their present and future challenges, and finally the role made by the pathologists in these new issues in oncology field.
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Affiliation(s)
- Paul Hofman
- Laboratoire de pathologie clinique et expérimentale, hôpital Pasteur, université Côte d'Azur, CHU de Nice, BP 69, 30, avenue de la Voie-Romaine, 06001 Nice cedex 01, France; Biobanque hospitalière (BB-0033-00025), hôpital Pasteur, université Côte d'Azur, CHU de Nice, BP 69, 30, avenue de la Voie-Romaine, 06001 Nice cedex 01, France; FHU OncoAge, hôpital Pasteur, université Côte d'Azur, CHU de Nice, BP 69, 30, avenue de la Voie-Romaine, 06001 Nice cedex 01, France.
| | - Georges Dagher
- Biobanques, Inserm US013, hôpital de la Salpêtrière, 47, boulevard de l'Hôpital, 75651 Paris, France
| | - Pierre Laurent-Puig
- UMR-1138, Inserm, département de biologie, hôpital européen Georges-Pompidou, université Paris Descartes, Assistance publique-Hôpitaux de Paris, 20, rue Leblanc, 75015 Paris, France
| | - Charles-Hugo Marquette
- FHU OncoAge, hôpital Pasteur, université Côte d'Azur, CHU de Nice, BP 69, 30, avenue de la Voie-Romaine, 06001 Nice cedex 01, France; Service de pneumologie, hôpital Pasteur, université Côte d'Azur, CHU de Nice, BP 69, 30, avenue de la Voie-Romaine, 06001 Nice cedex 01, France
| | - Fabrice Barlesi
- Service d'oncologie multidisciplinaire et innovations thérapeutiques, Aix-Marseille université, Assistance publique-Hôpitaux de Marseille, 13920 Marseille cedex 15, France
| | - Frédéric Bibeau
- Laboratoire de pathologie, CHU de Caen, avenue de la Côte-de-Nacre, 14000 Caen, France
| | - Bruno Clément
- Inserm, Inra, nutrition métabolismes et cancer, CRB-Santé, université de Rennes, rue Henri-Le-Guilloux, 35033 Rennes, France
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